jgi.p|Nanoce1779_2|573483, mRNA_1788 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|573483
Unique Name	mRNA_1788
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2008
Alignment location	scaffold_1:1521147..1523154 +

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Properties


Property Name	Value
TranscriptId	573569
Track	FilteredModels2
ProteinId	573483

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:1521147..1523154 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|573483	gene_1788	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|573483	mRNA_1788-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1788	CDS_1788	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:1521147..1523154+
coding sequence from alignment at scaffold_1:1521147..1523154+

mRNA sequence

>mRNA_1788 ID=mRNA_1788|Name=jgi.p|Nanoce1779_2|573483|organism=Nannochloropsis oceanica|type=mRNA|length=2008bp
ACAGAGTAATTTCGATGGAGAATGACGAATGCGAGACGCACCAGCCCTTC
CAGTACAGGTCTTCAGGTGGCTCCTTCCGTGGCGGCCGCAGCGAGGCGGA
TGGAGGCATGCTGGAGGACGATGAAGAATTGCAGCGCCTCGAGCGCCACT
TAGAAGGGAGCATGGAGGGCGTAGAAGAAGCGGGCAAAAGTTTCTTAGTA
AGGGCACGACAGGGGCTAGCCTCATTGAAGCGGTCCCTGAGCGGTAGTGG
GCAGGAGGAAGCAGACGAGCGGACGGGCGGCAGCAAGATGGAGTTGCCCA
TCGGGTGCAAAGGTTATGGCGCAGATCCGTGCTCGGAGCTGGAGCAGGAC
ATGCAAAGTGATATGCAGGAGGCGGCTAAGTTACTGATGGATGCGACGAG
GCGCATCGAGGGCGATATTCATCATTTGCATGCGCCTGAGCTTTACCACC
CCGAGGCGGTCACGAGCTACGAAGAGATGCGCCAATGGCCGGAAGGAAGC
ACACGGGCGTTGGACGCGCGCAAGATAAACAAGGACACAATCGAAGTGAC
GCAGGTTACTAAGGGGGGCGTGGGATCCTGTTCTGATGGGGAGGGCGAAA
TGAAACAAGGCCGGCAGCGCAACAATAACTCGACCGATGAGGATGCAGTG
GCAGCGAAAGAGCGCATGGGAGTGAAGAGAGAGGAGATTGACAAGAGGAC
AGAGGAAGAAAAGAGAGAAGATGAAGAAGAAATGCTTGAAATGTTGCAGA
TGTTCACGCCTGAGTAGAGAGAGAAAGAGAAATATGGAGTGAAGCGATTG
ACGTGACAGAGTGGGAAGCAGAAGAGCAGGTGCTGTGTGTATGTGTGATT
TGGGTGCGAGCTGCATGTGGGAGTGGAGGAGAGGCAGGACATTCTTGGCG
CGGGTAGTAGGGTGGTGAAACAAAAGGTGAGTAGAACTGAGGGAGTGCAA
GGCGCGCTATTGTGTATCGTGTTCATACATGCATGCCGGGGCTTGCAGGG
ATCGGGATACATGGCCAGCGAGTTCGGAGACATTTCACTTCACGTTGTCC
ACGAAAAGAAAAAGAGGCGACAGTATTGTTCAAAATCGGTTGTTTTTGGG
TGCTCCCTCCTTGCACCTGATTCTTCCCTCCTTCCTGTCAGCGGTCTACC
CTAATCCTCCACGCTCCCGCTTTCCTCCTCCTACTTGCCTGCCCTTACCA
GTCGCTCGATGAGCTGGTTGAGCCGAGGGAGCATCACACGCGAGTCGTCC
AGAAGGCCCGCAGCCACCATGGCATTGTCGAACACCTGCTCCGCCACAAC
CTGAGGAAAGAGGGAGGTACAGAGGGAGGGTTGAGCAGGTCGTGTGAAAA
TCTTCTGACGACGCATATTGTTCTGTCTATTAGTTTTGATTCGAAGCATG
AGCGACCGTCTCTAGTGGGCCTCCTCTCCGCCCCGCTGCCCCCCCATCCG
AACCTTTGCGAGCTCGGCGTCTTCGGTGCGCAGGGCGTGGAGACGGATGA
TGATGGGATGGCGCGGGTTGATCTCCAGGTGCTGCTTGGGCACGAACGAG
GCCTGGCCCATGGACTGCTGTTCCACCATGCGCATCATCCGCCGCAGTGC
CCCCGACTCGTGGTCCGTGACGATGGCCGGCGAGTCGTACAGCCGCGAGG
TGGTCTTAGCGTCCTGCAGCTTCTCGGGCAGGGTCGACACCAGCCACTTG
GCCAGGTCCTCCGCCTCCGCCTCCGTCAGGGGAGGCAGCGCACTACCGTC
GCTGTCGCCGTCCTTTTTGTCTGGGAGGAAAAGGAGAGGACGTTGAGACG
TTAATTGAGTGAGATGAGGAATGTGCCAACATTATGCAGCCAAAGGTCTT
GATGCCTCAACTTTCCCCTCCCTTACTGGTATACTATCCCTTTTCACAAT
GCCCCCTTTTATAACTCTCGCCTCCTCCCTGCTTCTCACCTTCCTCCTCC
TCCGTCTTCTTGTCTGGCCCCAGATCGAGCCCGGTGGCTTCGGCCGTCTT
GAAGTCGC

protein sequence of jgi.p|Nanoce1779_2|573483

>mRNA_1788-protein ID=mRNA_1788-protein|Name=jgi.p|Nanoce1779_2|573483|organism=Nannochloropsis oceanica|type=polypeptide|length=251bp
MENDECETHQPFQYRSSGGSFRGGRSEADGGMLEDDEELQRLERHLEGSM
EGVEEAGKSFLVRARQGLASLKRSLSGSGQEEADERTGGSKMELPIGCKG
YGADPCSELEQDMQSDMQEAAKLLMDATRRIEGDIHHLHAPELYHPEAVT
SYEEMRQWPEGSTRALDARKINKDTIEVTQVTKGGVGSCSDGEGEMKQGR
QRNNNSTDEDAVAAKERMGVKREEIDKRTEEEKREDEEEMLEMLQMFTPE
*

mRNA from alignment at scaffold_1:1521147..1523154+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1788 ID=mRNA_1788|Name=jgi.p|Nanoce1779_2|573483|organism=Nannochloropsis oceanica|type=mRNA|length=2008bp|location=Sequence derived from alignment at scaffold_1:1521147..1523154+ (Nannochloropsis oceanica)
ACAGAGTAATTTCGATGGAGAATGACGAATGCGAGACGCACCAGCCCTTC
CAGTACAGGTCTTCAGGTGGCTCCTTCCGTGGCGGCCGCAGCGAGGCGGA
TGGAGGCATGCTGGAGGACGATGAAGAATTGCAGCGCCTCGAGCGCCACT
TAGAAGGGAGCATGGAGGGCGTAGAAGAAGCGGGCAAAAGTTTCTTAGTA
AGGGCACGACAGGGGCTAGCCTCATTGAAGCGGTCCCTGAGCGGTAGTGG
GCAGGAGGAAGCAGACGAGCGGACGGGCGGCAGCAAGATGGAGTTGCCCA
TCGGGTGCAAAGGTTATGGCGCAGATCCGTGCTCGGAGCTGGAGCAGGAC
ATGCAAAGTGATATGCAGGAGGCGGCTAAGTTACTGATGGATGCGACGAG
GCGCATCGAGGGCGATATTCATCATTTGCATGCGCCTGAGCTTTACCACC
CCGAGGCGGTCACGAGCTACGAAGAGATGCGCCAATGGCCGGAAGGAAGC
ACACGGGCGTTGGACGCGCGCAAGATAAACAAGGACACAATCGAAGTGAC
GCAGGTTACTAAGGGGGGCGTGGGATCCTGTTCTGATGGGGAGGGCGAAA
TGAAACAAGGCCGGCAGCGCAACAATAACTCGACCGATGAGGATGCAGTG
GCAGCGAAAGAGCGCATGGGAGTGAAGAGAGAGGAGATTGACAAGAGGAC
AGAGGAAGAAAAGAGAGAAGATGAAGAAGAAATGCTTGAAATGTTGCAGA
TGTTCACGCCTGAGTAGAGAGAGAAAGAGAAATATGGAGTGAAGCGATTG
ACGTGACAGAGTGGGAAGCAGAAGAGCAGGTGCTGTGTGTATGTGTGATT
TGGGTGCGAGCTGCATGTGGGAGTGGAGGAGAGGCAGGACATTCTTGGCG
CGGGTAGTAGGGTGGTGAAACAAAAGGTGAGTAGAACTGAGGGAGTGCAA
GGCGCGCTATTGTGTATCGTGTTCATACATGCATGCCGGGGCTTGCAGGG
ATCGGGATACATGGCCAGCGAGTTCGGAGACATTTCACTTCACGTTGTCC
ACGAAAAGAAAAAGAGGCGACAGTATTGTTCAAAATCGGTTGTTTTTGGG
TGCTCCCTCCTTGCACCTGATTCTTCCCTCCTTCCTGTCAGCGGTCTACC
CTAATCCTCCACGCTCCCGCTTTCCTCCTCCTACTTGCCTGCCCTTACCA
GTCGCTCGATGAGCTGGTTGAGCCGAGGGAGCATCACACGCGAGTCGTCC
AGAAGGCCCGCAGCCACCATGGCATTGTCGAACACCTGCTCCGCCACAAC
CTGAGGAAAGAGGGAGGTACAGAGGGAGGGTTGAGCAGGTCGTGTGAAAA
TCTTCTGACGACGCATATTGTTCTGTCTATTAGTTTTGATTCGAAGCATG
AGCGACCGTCTCTAGTGGGCCTCCTCTCCGCCCCGCTGCCCCCCCATCCG
AACCTTTGCGAGCTCGGCGTCTTCGGTGCGCAGGGCGTGGAGACGGATGA
TGATGGGATGGCGCGGGTTGATCTCCAGGTGCTGCTTGGGCACGAACGAG
GCCTGGCCCATGGACTGCTGTTCCACCATGCGCATCATCCGCCGCAGTGC
CCCCGACTCGTGGTCCGTGACGATGGCCGGCGAGTCGTACAGCCGCGAGG
TGGTCTTAGCGTCCTGCAGCTTCTCGGGCAGGGTCGACACCAGCCACTTG
GCCAGGTCCTCCGCCTCCGCCTCCGTCAGGGGAGGCAGCGCACTACCGTC
GCTGTCGCCGTCCTTTTTGTCTGGGAGGAAAAGGAGAGGACGTTGAGACG
TTAATTGAGTGAGATGAGGAATGTGCCAACATTATGCAGCCAAAGGTCTT
GATGCCTCAACTTTCCCCTCCCTTACTGGTATACTATCCCTTTTCACAAT
GCCCCCTTTTATAACTCTCGCCTCCTCCCTGCTTCTCACCTTCCTCCTCC
TCCGTCTTCTTGTCTGGCCCCAGATCGAGCCCGGTGGCTTCGGCCGTCTT
GAAGTCGC

Coding sequence (CDS) from alignment at scaffold_1:1521147..1523154+

>mRNA_1788 ID=mRNA_1788|Name=jgi.p|Nanoce1779_2|573483|organism=Nannochloropsis oceanica|type=CDS|length=753bp|location=Sequence derived from alignment at scaffold_1:1521147..1523154+ (Nannochloropsis oceanica)
ATGGAGAATGACGAATGCGAGACGCACCAGCCCTTCCAGTACAGGTCTTC
AGGTGGCTCCTTCCGTGGCGGCCGCAGCGAGGCGGATGGAGGCATGCTGG
AGGACGATGAAGAATTGCAGCGCCTCGAGCGCCACTTAGAAGGGAGCATG
GAGGGCGTAGAAGAAGCGGGCAAAAGTTTCTTAGTAAGGGCACGACAGGG
GCTAGCCTCATTGAAGCGGTCCCTGAGCGGTAGTGGGCAGGAGGAAGCAG
ACGAGCGGACGGGCGGCAGCAAGATGGAGTTGCCCATCGGGTGCAAAGGT
TATGGCGCAGATCCGTGCTCGGAGCTGGAGCAGGACATGCAAAGTGATAT
GCAGGAGGCGGCTAAGTTACTGATGGATGCGACGAGGCGCATCGAGGGCG
ATATTCATCATTTGCATGCGCCTGAGCTTTACCACCCCGAGGCGGTCACG
AGCTACGAAGAGATGCGCCAATGGCCGGAAGGAAGCACACGGGCGTTGGA
CGCGCGCAAGATAAACAAGGACACAATCGAAGTGACGCAGGTTACTAAGG
GGGGCGTGGGATCCTGTTCTGATGGGGAGGGCGAAATGAAACAAGGCCGG
CAGCGCAACAATAACTCGACCGATGAGGATGCAGTGGCAGCGAAAGAGCG
CATGGGAGTGAAGAGAGAGGAGATTGACAAGAGGACAGAGGAAGAAAAGA
GAGAAGATGAAGAAGAAATGCTTGAAATGTTGCAGATGTTCACGCCTGAG
TAG

Synonyms

Publications