jgi.p|Nanoce1779_2|573475, mRNA_1787 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|573475
Unique NamemRNA_1787
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1441
Alignment locationscaffold_1:1518669..1520109 +

Link to JBrowse

Properties
Property NameValue
TranscriptId573561
TrackFilteredModels2
ProteinId573475
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:1518669..1520109 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573475gene_1787Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573475mRNA_1787-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1787CDS_1787Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1787 ID=mRNA_1787|Name=jgi.p|Nanoce1779_2|573475|organism=Nannochloropsis oceanica|type=mRNA|length=1441bp
AGGGAGCCGCGCAACACCGAGCACTCTCCACGCACGACGACGGGCTCTGA
CTCGCCCTCCTCCTCCTCCTCCTCAACACCATCAAAGTCATGGCAGTGAG
GTGGACGGCAAGGTCGCCAAGACCGGCAGCTGCAGCACCATGCCTCGTGC
TGACCATCCTCCTAATCGTCGTGGGGGCTCCCACGATCCATGCCTTTATC
ATCCCCTCCCTTCCCCCTTCCGTCATCGCCCGGGCCTACCCCTTTCACCT
CCCTCGCCGCACTACGAGTCTACCCTCCTCCTCCTCAGCATTTGCCCATT
CCTCCTCGCCCCTCTATTCAAGCGCCTCGGCCGGTGCCATCCCTTTGGAA
GGCGGCCTTAACCTGCCCCCGTCCAAGCAAGGCGGGGTTCGTGACAAGCT
CGATGCCCTCTACCGCTTCACCCGACCTCACACCATCCGCGGTACCATCC
TTGCCTCCCTCATGGGCGTCCTCCGCTGTTATATCGAGCATCCCAAATCC
TTTGCTAATCCGCTCCAGCCTTTGCCAAGGGCTTTGCTTGGCCTCCTGGC
CTTGCTGTGCGGCAACATATTCATCGTGGGCATCAACCAAATTTACGACG
TCGACATCGACAAGGTCAATAAGCCCTTTCTTCCCCTGGCCGCCCAGCGC
ATGTCGGGCAAATCTGCATGGGCCGTGGTGTTGGCTGCTTGTGCGGGCGG
GTTGGCCATTACTAAGTCTGCTTTTAGCCCCCTCATCTTCAACATGTACG
CTGCGGGCATCCTGGCGGGAACCCTCTACTCCGTGCCGCCCTTCTACTTT
AAGCGCTTCCCGCTCGTGGCAGCAACTACTATCGCCTTTGTGCGTGGCTT
TAGTTTGAACTTCGGGGTGTACTACGCGGTGCGGGAGGCGCTGGGCATCC
CGTTCGCCTGGAACCCCATAGTGCTCTTCATCACCCGCTTTATGACTGTC
TTCGCCGCCGTTATCGCCGTCTCCAAAGACCTGCCCGACACGGAGGGCGA
CCGAAAGTATGATGTTCAAACGTTTGCCACACGGGTGGGCGTCGCAAACA
TTGCGCGAGGGGCGACGGCCGTCCTCTTTCTCAACTACGTGTCGGCCGTC
GTGCAGGGAGTAGTCAACCCAAGCGGCGCCTTCAGGCAGTGGGTGATGGT
GGGGGGACACACACTCTTGGCCGCGCTCTTGGCACGACGGTACTCAAGGC
TAGACCCCAAGAAACTGAGCTCCATCAAGGCCTTCTACAAGAGCATCTGG
GATTTGTTTTACCTGGAGTATGTACTTTACCCTTTCCTGTAGGCTTGCAG
CGTAAACGGGAAAGATTTCAATGCAAATAATGCCAACCGTTTCTTTTTAT
ATTTGGAGCCGTACGTTTTAAATCTTTGAGCACACGACAGCATGGTACTG
GACCCAAAAGCCCACTGCAAACAAAAAAAAACGTGTGACGA
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protein sequence of jgi.p|Nanoce1779_2|573475

>mRNA_1787-protein ID=mRNA_1787-protein|Name=jgi.p|Nanoce1779_2|573475|organism=Nannochloropsis oceanica|type=polypeptide|length=401bp
MAVRWTARSPRPAAAAPCLVLTILLIVVGAPTIHAFIIPSLPPSVIARAY
PFHLPRRTTSLPSSSSAFAHSSSPLYSSASAGAIPLEGGLNLPPSKQGGV
RDKLDALYRFTRPHTIRGTILASLMGVLRCYIEHPKSFANPLQPLPRALL
GLLALLCGNIFIVGINQIYDVDIDKVNKPFLPLAAQRMSGKSAWAVVLAA
CAGGLAITKSAFSPLIFNMYAAGILAGTLYSVPPFYFKRFPLVAATTIAF
VRGFSLNFGVYYAVREALGIPFAWNPIVLFITRFMTVFAAVIAVSKDLPD
TEGDRKYDVQTFATRVGVANIARGATAVLFLNYVSAVVQGVVNPSGAFRQ
WVMVGGHTLLAALLARRYSRLDPKKLSSIKAFYKSIWDLFYLEYVLYPFL
*
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mRNA from alignment at scaffold_1:1518669..1520109+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1787 ID=mRNA_1787|Name=jgi.p|Nanoce1779_2|573475|organism=Nannochloropsis oceanica|type=mRNA|length=1441bp|location=Sequence derived from alignment at scaffold_1:1518669..1520109+ (Nannochloropsis oceanica)
AGGGAGCCGCGCAACACCGAGCACTCTCCACGCACGACGACGGGCTCTGA
CTCGCCCTCCTCCTCCTCCTCCTCAACACCATCAAAGTCATGGCAGTGAG
GTGGACGGCAAGGTCGCCAAGACCGGCAGCTGCAGCACCATGCCTCGTGC
TGACCATCCTCCTAATCGTCGTGGGGGCTCCCACGATCCATGCCTTTATC
ATCCCCTCCCTTCCCCCTTCCGTCATCGCCCGGGCCTACCCCTTTCACCT
CCCTCGCCGCACTACGAGTCTACCCTCCTCCTCCTCAGCATTTGCCCATT
CCTCCTCGCCCCTCTATTCAAGCGCCTCGGCCGGTGCCATCCCTTTGGAA
GGCGGCCTTAACCTGCCCCCGTCCAAGCAAGGCGGGGTTCGTGACAAGCT
CGATGCCCTCTACCGCTTCACCCGACCTCACACCATCCGCGGTACCATCC
TTGCCTCCCTCATGGGCGTCCTCCGCTGTTATATCGAGCATCCCAAATCC
TTTGCTAATCCGCTCCAGCCTTTGCCAAGGGCTTTGCTTGGCCTCCTGGC
CTTGCTGTGCGGCAACATATTCATCGTGGGCATCAACCAAATTTACGACG
TCGACATCGACAAGGTCAATAAGCCCTTTCTTCCCCTGGCCGCCCAGCGC
ATGTCGGGCAAATCTGCATGGGCCGTGGTGTTGGCTGCTTGTGCGGGCGG
GTTGGCCATTACTAAGTCTGCTTTTAGCCCCCTCATCTTCAACATGTACG
CTGCGGGCATCCTGGCGGGAACCCTCTACTCCGTGCCGCCCTTCTACTTT
AAGCGCTTCCCGCTCGTGGCAGCAACTACTATCGCCTTTGTGCGTGGCTT
TAGTTTGAACTTCGGGGTGTACTACGCGGTGCGGGAGGCGCTGGGCATCC
CGTTCGCCTGGAACCCCATAGTGCTCTTCATCACCCGCTTTATGACTGTC
TTCGCCGCCGTTATCGCCGTCTCCAAAGACCTGCCCGACACGGAGGGCGA
CCGAAAGTATGATGTTCAAACGTTTGCCACACGGGTGGGCGTCGCAAACA
TTGCGCGAGGGGCGACGGCCGTCCTCTTTCTCAACTACGTGTCGGCCGTC
GTGCAGGGAGTAGTCAACCCAAGCGGCGCCTTCAGGCAGTGGGTGATGGT
GGGGGGACACACACTCTTGGCCGCGCTCTTGGCACGACGGTACTCAAGGC
TAGACCCCAAGAAACTGAGCTCCATCAAGGCCTTCTACAAGAGCATCTGG
GATTTGTTTTACCTGGAGTATGTACTTTACCCTTTCCTGTAGGCTTGCAG
CGTAAACGGGAAAGATTTCAATGCAAATAATGCCAACCGTTTCTTTTTAT
ATTTGGAGCCGTACGTTTTAAATCTTTGAGCACACGACAGCATGGTACTG
GACCCAAAAGCCCACTGCAAACAAAAAAAAACGTGTGACGA
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Coding sequence (CDS) from alignment at scaffold_1:1518669..1520109+

>mRNA_1787 ID=mRNA_1787|Name=jgi.p|Nanoce1779_2|573475|organism=Nannochloropsis oceanica|type=CDS|length=1203bp|location=Sequence derived from alignment at scaffold_1:1518669..1520109+ (Nannochloropsis oceanica)
ATGGCAGTGAGGTGGACGGCAAGGTCGCCAAGACCGGCAGCTGCAGCACC
ATGCCTCGTGCTGACCATCCTCCTAATCGTCGTGGGGGCTCCCACGATCC
ATGCCTTTATCATCCCCTCCCTTCCCCCTTCCGTCATCGCCCGGGCCTAC
CCCTTTCACCTCCCTCGCCGCACTACGAGTCTACCCTCCTCCTCCTCAGC
ATTTGCCCATTCCTCCTCGCCCCTCTATTCAAGCGCCTCGGCCGGTGCCA
TCCCTTTGGAAGGCGGCCTTAACCTGCCCCCGTCCAAGCAAGGCGGGGTT
CGTGACAAGCTCGATGCCCTCTACCGCTTCACCCGACCTCACACCATCCG
CGGTACCATCCTTGCCTCCCTCATGGGCGTCCTCCGCTGTTATATCGAGC
ATCCCAAATCCTTTGCTAATCCGCTCCAGCCTTTGCCAAGGGCTTTGCTT
GGCCTCCTGGCCTTGCTGTGCGGCAACATATTCATCGTGGGCATCAACCA
AATTTACGACGTCGACATCGACAAGGTCAATAAGCCCTTTCTTCCCCTGG
CCGCCCAGCGCATGTCGGGCAAATCTGCATGGGCCGTGGTGTTGGCTGCT
TGTGCGGGCGGGTTGGCCATTACTAAGTCTGCTTTTAGCCCCCTCATCTT
CAACATGTACGCTGCGGGCATCCTGGCGGGAACCCTCTACTCCGTGCCGC
CCTTCTACTTTAAGCGCTTCCCGCTCGTGGCAGCAACTACTATCGCCTTT
GTGCGTGGCTTTAGTTTGAACTTCGGGGTGTACTACGCGGTGCGGGAGGC
GCTGGGCATCCCGTTCGCCTGGAACCCCATAGTGCTCTTCATCACCCGCT
TTATGACTGTCTTCGCCGCCGTTATCGCCGTCTCCAAAGACCTGCCCGAC
ACGGAGGGCGACCGAAAGTATGATGTTCAAACGTTTGCCACACGGGTGGG
CGTCGCAAACATTGCGCGAGGGGCGACGGCCGTCCTCTTTCTCAACTACG
TGTCGGCCGTCGTGCAGGGAGTAGTCAACCCAAGCGGCGCCTTCAGGCAG
TGGGTGATGGTGGGGGGACACACACTCTTGGCCGCGCTCTTGGCACGACG
GTACTCAAGGCTAGACCCCAAGAAACTGAGCTCCATCAAGGCCTTCTACA
AGAGCATCTGGGATTTGTTTTACCTGGAGTATGTACTTTACCCTTTCCTG
TAG
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Synonyms
Publications