jgi.p|Nanoce1779_2|627063, mRNA_1786 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|627063
Unique NamemRNA_1786
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length920
Alignment locationscaffold_1:1516630..1518102 -

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Properties
Property NameValue
TranscriptId627149
TrackFilteredModels2
ProteinId627063
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:1516630..1518102 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|627063gene_1786Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|627063mRNA_1786-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1786CDS_1786Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1786 ID=mRNA_1786|Name=jgi.p|Nanoce1779_2|627063|organism=Nannochloropsis oceanica|type=mRNA|length=920bp
CTCCGCATGATGGCTGCCGCTCCCAAGGTACGGTCAACTCCTTTCATTCT
TCTACATGTGTGTGCCTTTATCATTCTAAGATATGTACTTGTCGCATCGG
TGACCTTGAGATGGATTTATTTCCATGCCTGTGGTTCTCCTCCCGTGCTC
ATCCCGGCCTCTCTCTATCTCCCGTCCTCTCTATCTCCCCCCCTCCCTCG
GCCATGTGCCCTCTAGGTCGCGGTGATGGTTAATGGTTTGCCGGGTGCTA
TGGGCAAGGAAGTGGCTGCGGCCTGCCTGCGAAGAGGACTGGCAGTGTGC
TCGGTGGGCTTGACGGGTCCGCAAATTGAGGAGGAGAGCGTGGAGGTGGA
TGATGGGGAGGGCGGCCAGAAGCAGACAGTGCGCTTGGTGAAGGGGCCCC
TCACGGGGAACGGCGACGAGGAGTGCGACGCCCGGTTGCAAGGCCTGCTG
GCCGGCTACCGTGACAGCAAAACGCGGCTGATTGCCGTGGACTACACTCA
TCCCACTGCTGTGAACCCAAATGGCAAGCTCTACGCCCGCCACAAGCTCG
ACTTCGTCATGGGCACGACGGGCGGGGATCGGGAAAAGCTGATGGACGAC
GTGGCTGCGGGCGGGATCTACGCCGTCATTGCCCCCAATATGGCGAAGCA
GATCGTGGCCTTGCAGGCGGGCTTGGAGACGATGGCGGCCACGTTTCCGG
GGGCCTTCGAAGGCTACACCCTCAATGTACGTCGTCTTGTCTGCCCTCCC
TCCGTCCACGACTCGTTGCCGTCCACCCTTCTTCCCCTCCTTCGAGTGTT
TCTTATCCCCCTTTCCAGGAACATTTGTATCGTCCTTGCCTCTCAAGTCA
CTCGGCTTCCCTCCCACCCTCCCTCCCGTCCTCCCCCTCGGCCCCAGGTG
GTGGAGTCCCACCAGAGCAG
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protein sequence of jgi.p|Nanoce1779_2|627063

>mRNA_1786-protein ID=mRNA_1786-protein|Name=jgi.p|Nanoce1779_2|627063|organism=Nannochloropsis oceanica|type=polypeptide|length=231bp
MVNGLPGAMGKEVAAACLRRGLAVCSVGLTGPQIEEESVEVDDGEGGQKQ
TVRLVKGPLTGNGDEECDARLQGLLAGYRDSKTRLIAVDYTHPTAVNPNG
KLYARHKLDFVMGTTGGDREKLMDDVAAGGIYAVIAPNMAKQIVALQAGL
ETMAATFPGAFEGYTLNVRRLVCPPSVHDSLPSTLLPLLRVFLIPLSRNI
CIVLASQVTRLPSHPPSRPPPRPQVVESHQS
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mRNA from alignment at scaffold_1:1516630..1518102-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1786 ID=mRNA_1786|Name=jgi.p|Nanoce1779_2|627063|organism=Nannochloropsis oceanica|type=mRNA|length=1473bp|location=Sequence derived from alignment at scaffold_1:1516630..1518102- (Nannochloropsis oceanica)
CTCCGCATGATGGCTGCCGCTCCCAAGGTACGGTCAACTCCTTTCATTCT
TCTACATGTGTGTGCCTTTATCATTCTAAGATATGTACTTGTCGCATCGG
TGACCTTGAGATGGATTTATTTCCATGCCTGTGGTTCTCCTCCCGTGCTC
ATCCCGGCCTCTCTCTATCTCCCGTCCTCTCTATCTCCCCCCCTCCCTCG
GCCATGTGCCCTCTAGGTCGCGGTGATGGTTAATGGTTTGCCGGGTGCTA
TGGGCAAGGAAGTGGCTGCGGCCTGCCTGCGAAGAGGACTGGCAGTGTGC
TCGGTGGGCTTGACGGGTCCGCAAATTGGTAGGTGCGGGGAGGGAAGAGG
AGAGAAGGAAGCGAAGGAGAAATGCAGGAGGCTATCCTCATCGCTTCTTA
TATTTTTTCTTTTCTTCTCCTCCACTACCGCCATCCCAAAGAGGAGGAGA
GCGTGGAGGTGGATGATGGGGAGGGCGGCCAGAAGCAGACAGTGCGCTTG
GTGAAGGGGCCCCTCACGGGGAACGGCGACGAGGAGTGCGACGCCCGGTT
GCAAGGTGAGGCGAGGGGGTAGGATGTGGGGGAAGTATGAAGGGAAAGGG
CAGCGTGGGTGTATCGCCGGGTGAAATCACTCGAATCTGGCTCCTGACTT
CCTCTCTCTGTCCTCCCTCCCTCTCTCCAATCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTACCGC
ACCAGGCCTGCTGGCCGGCTACCGTGACAGCAAAACGCGGCTGATTGCCG
TGGACTACACTCATCCCACTGCTGTGAACCCAAATGGCAAGCTCTACGCC
CGCCACAAGCTCGACTTCGTCATGGTACACGGGCATCTCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTGCGCTTCCTGCCTGCC
CACTCTACCCTCCCCCTGTCCCCCTTTCTCTAACCTTAAACCAGGGCACG
ACGGGCGGGGATCGGGAAAAGCTGATGGACGACGTGGCTGCGGGCGGGAT
CTACGCCGTCATTGCCCCCAATATGGCGAAGCAGATCGTGGCCTTGCAGG
TGGAGAGGAGGGCAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGTTGGAA
CGAAGGAAAGGTGGCATGTTGGAGGGAGGCCAGAACTGATGCTCACACAA
TCACATACACACCCGTTAGGCGGGCTTGGAGACGATGGCGGCCACGTTTC
CGGGGGCCTTCGAAGGCTACACCCTCAATGTACGTCGTCTTGTCTGCCCT
CCCTCCGTCCACGACTCGTTGCCGTCCACCCTTCTTCCCCTCCTTCGAGT
GTTTCTTATCCCCCTTTCCAGGAACATTTGTATCGTCCTTGCCTCTCAAG
TCACTCGGCTTCCCTCCCACCCTCCCTCCCGTCCTCCCCCTCGGCCCCAG
GTGGTGGAGTCCCACCAGAGCAG
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Coding sequence (CDS) from alignment at scaffold_1:1516630..1518102-

>mRNA_1786 ID=mRNA_1786|Name=jgi.p|Nanoce1779_2|627063|organism=Nannochloropsis oceanica|type=CDS|length=3465bp|location=Sequence derived from alignment at scaffold_1:1516630..1518102- (Nannochloropsis oceanica)
GCGGGCTTGGAGACGATGGCGGCCACGTTTCCGGGGGCCTTCGAAGGCTA
CACCCTCAATGTACGTCGTCTTGTCTGCCCTCCCTCCGTCCACGACTCGT
TGCCGTCCACCCTTCTTCCCCTCCTTCGAGTGTTTCTTATCCCCCTTTCC
AGGAACATTTGTATCGTCCTTGCCTCTCAAGTCACTCGGCTTCCCTCCCA
CCCTCCCTCCCGTCCTCCCCCTCGGCCCCAGGTGGTGGAGTCCCACCAGA
GCGGCACGACGGGCGGGGATCGGGAAAAGCTGATGGACGACGTGGCTGCG
GGCGGGATCTACGCCGTCATTGCCCCCAATATGGCGAAGCAGATCGTGGC
CTTGCAGGCCTGCTGGCCGGCTACCGTGACAGCAAAACGCGGCTGATTGC
CGTGGACTACACTCATCCCACTGCTGTGAACCCAAATGGCAAGCTCTACG
CCCGCCACAAGCTCGACTTCGTCATGAGGAGGAGAGCGTGGAGGTGGATG
ATGGGGAGGGCGGCCAGAAGCAGACAGTGCGCTTGGTGAAGGGGCCCCTC
ACGGGGAACGGCGACGAGGAGTGCGACGCCCGGTTGCAAGATGGTTAATG
GTTTGCCGGGTGCTATGGGCAAGGAAGTGGCTGCGGCCTGCCTGCGAAGA
GGACTGGCAGTGTGCTCGGTGGGCTTGACGGGTCCGCAAATTGGCGGGCT
TGGAGACGATGGCGGCCACGTTTCCGGGGGCCTTCGAAGGCTACACCCTC
AATGTACGTCGTCTTGTCTGCCCTCCCTCCGTCCACGACTCGTTGCCGTC
CACCCTTCTTCCCCTCCTTCGAGTGTTTCTTATCCCCCTTTCCAGGAACA
TTTGTATCGTCCTTGCCTCTCAAGTCACTCGGCTTCCCTCCCACCCTCCC
TCCCGTCCTCCCCCTCGGCCCCAGGTGGTGGAGTCCCACCAGAGCGGCAC
GACGGGCGGGGATCGGGAAAAGCTGATGGACGACGTGGCTGCGGGCGGGA
TCTACGCCGTCATTGCCCCCAATATGGCGAAGCAGATCGTGGCCTTGCAG
GCCTGCTGGCCGGCTACCGTGACAGCAAAACGCGGCTGATTGCCGTGGAC
TACACTCATCCCACTGCTGTGAACCCAAATGGCAAGCTCTACGCCCGCCA
CAAGCTCGACTTCGTCATGAGGAGGAGAGCGTGGAGGTGGATGATGGGGA
GGGCGGCCAGAAGCAGACAGTGCGCTTGGTGAAGGGGCCCCTCACGGGGA
ACGGCGACGAGGAGTGCGACGCCCGGTTGCAAGATGGTTAATGGTTTGCC
GGGTGCTATGGGCAAGGAAGTGGCTGCGGCCTGCCTGCGAAGAGGACTGG
CAGTGTGCTCGGTGGGCTTGACGGGTCCGCAAATTGGCGGGCTTGGAGAC
GATGGCGGCCACGTTTCCGGGGGCCTTCGAAGGCTACACCCTCAATGTAC
GTCGTCTTGTCTGCCCTCCCTCCGTCCACGACTCGTTGCCGTCCACCCTT
CTTCCCCTCCTTCGAGTGTTTCTTATCCCCCTTTCCAGGAACATTTGTAT
CGTCCTTGCCTCTCAAGTCACTCGGCTTCCCTCCCACCCTCCCTCCCGTC
CTCCCCCTCGGCCCCAGGTGGTGGAGTCCCACCAGAGCGGCACGACGGGC
GGGGATCGGGAAAAGCTGATGGACGACGTGGCTGCGGGCGGGATCTACGC
CGTCATTGCCCCCAATATGGCGAAGCAGATCGTGGCCTTGCAGGCCTGCT
GGCCGGCTACCGTGACAGCAAAACGCGGCTGATTGCCGTGGACTACACTC
ATCCCACTGCTGTGAACCCAAATGGCAAGCTCTACGCCCGCCACAAGCTC
GACTTCGTCATGAGGAGGAGAGCGTGGAGGTGGATGATGGGGAGGGCGGC
CAGAAGCAGACAGTGCGCTTGGTGAAGGGGCCCCTCACGGGGAACGGCGA
CGAGGAGTGCGACGCCCGGTTGCAAGATGGTTAATGGTTTGCCGGGTGCT
ATGGGCAAGGAAGTGGCTGCGGCCTGCCTGCGAAGAGGACTGGCAGTGTG
CTCGGTGGGCTTGACGGGTCCGCAAATTGGCGGGCTTGGAGACGATGGCG
GCCACGTTTCCGGGGGCCTTCGAAGGCTACACCCTCAATGTACGTCGTCT
TGTCTGCCCTCCCTCCGTCCACGACTCGTTGCCGTCCACCCTTCTTCCCC
TCCTTCGAGTGTTTCTTATCCCCCTTTCCAGGAACATTTGTATCGTCCTT
GCCTCTCAAGTCACTCGGCTTCCCTCCCACCCTCCCTCCCGTCCTCCCCC
TCGGCCCCAGGTGGTGGAGTCCCACCAGAGCGGCACGACGGGCGGGGATC
GGGAAAAGCTGATGGACGACGTGGCTGCGGGCGGGATCTACGCCGTCATT
GCCCCCAATATGGCGAAGCAGATCGTGGCCTTGCAGGCCTGCTGGCCGGC
TACCGTGACAGCAAAACGCGGCTGATTGCCGTGGACTACACTCATCCCAC
TGCTGTGAACCCAAATGGCAAGCTCTACGCCCGCCACAAGCTCGACTTCG
TCATGAGGAGGAGAGCGTGGAGGTGGATGATGGGGAGGGCGGCCAGAAGC
AGACAGTGCGCTTGGTGAAGGGGCCCCTCACGGGGAACGGCGACGAGGAG
TGCGACGCCCGGTTGCAAGATGGTTAATGGTTTGCCGGGTGCTATGGGCA
AGGAAGTGGCTGCGGCCTGCCTGCGAAGAGGACTGGCAGTGTGCTCGGTG
GGCTTGACGGGTCCGCAAATTGGCGGGCTTGGAGACGATGGCGGCCACGT
TTCCGGGGGCCTTCGAAGGCTACACCCTCAATGTACGTCGTCTTGTCTGC
CCTCCCTCCGTCCACGACTCGTTGCCGTCCACCCTTCTTCCCCTCCTTCG
AGTGTTTCTTATCCCCCTTTCCAGGAACATTTGTATCGTCCTTGCCTCTC
AAGTCACTCGGCTTCCCTCCCACCCTCCCTCCCGTCCTCCCCCTCGGCCC
CAGGTGGTGGAGTCCCACCAGAGCGGCACGACGGGCGGGGATCGGGAAAA
GCTGATGGACGACGTGGCTGCGGGCGGGATCTACGCCGTCATTGCCCCCA
ATATGGCGAAGCAGATCGTGGCCTTGCAGGCCTGCTGGCCGGCTACCGTG
ACAGCAAAACGCGGCTGATTGCCGTGGACTACACTCATCCCACTGCTGTG
AACCCAAATGGCAAGCTCTACGCCCGCCACAAGCTCGACTTCGTCATGAG
GAGGAGAGCGTGGAGGTGGATGATGGGGAGGGCGGCCAGAAGCAGACAGT
GCGCTTGGTGAAGGGGCCCCTCACGGGGAACGGCGACGAGGAGTGCGACG
CCCGGTTGCAAGATGGTTAATGGTTTGCCGGGTGCTATGGGCAAGGAAGT
GGCTGCGGCCTGCCTGCGAAGAGGACTGGCAGTGTGCTCGGTGGGCTTGA
CGGGTCCGCAAATTG
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Synonyms
Publications