jgi.p|Nanoce1779_2|573467, mRNA_1785 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|573467
Unique NamemRNA_1785
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1879
Alignment locationscaffold_1:1513932..1515810 -

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Properties
Property NameValue
TranscriptId573553
TrackFilteredModels2
ProteinId573467
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:1513932..1515810 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573467gene_1785Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573467mRNA_1785-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1785CDS_1785Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1785 ID=mRNA_1785|Name=jgi.p|Nanoce1779_2|573467|organism=Nannochloropsis oceanica|type=mRNA|length=1879bp
TTACCTTACTGTGGTTGATTTTCCTTTTTTCATTTTTTCAAGATTTTAAA
TTTTGTATAACCGGCAACTGCCTTTTCTGCTTTTGAACTTCCTTTTCTAC
TGCTACTTCTTTCTCTCGTTCCGACATGTTTAATCGCCCTAACTTCTTGC
GATGAAGTTAGATAAATAATGAATCGATTGAAATGCACCATAAAACTGAT
GTTGCTGTACCTGTTGCTGCTGCTGCTGCATATACCCACCCATCCACCCA
CACACGAACACGCAAGAAAAGCTCACCGCCCTTTCCCTTGGAAATGTTAT
ATCCTCTTATCTCTTGTTAGCGTGTAATTCTCGTATTTCGATGCGCGCGA
AATCACGAAAAGTCTGTCGTTGTGAGAGCGTCTCTCTGAGTGGGTGTCTG
TGCGTGCGTGCTGGTATCTCCTTCGTGTCTCGTTCTCATCTCATTTCCTC
CTGTCGACAATACTCAATGTTGCTGCTGCTGGTGGAGCTATTTTTGTAGT
CCTATGCGGCTGCTGGTCGGAATGAAATAATCCATAAAGGGACGAAAGAA
ATAACGAGAAAGCTCCTTCCCTACTTCGCTAGCTCTCTTTTCCCACCTTT
TTCTTATGAATTGCGCAAGGGTAATCGCACGAAGAGGGGGGCAACGAGTA
CACAAATAAGTGTATCGATGAGAAATAGGTTCACAAACAGGTGCGGCCAC
ACGCTGATATGACTGTATAGCTATTTATGTAGAAAAAGGACAGGGAGAAG
GACAAGGAAGTCTCTGTCTTCGCATGCACGCGGGCGGGACACACTTTGAC
CTAGAGCTGCCGCGCACTTCCTGTTACTACCTCTGATATTGCCTATTGCT
GGATTTATATGTTGTCGTCAATATGGCTCCTGTTGCTACTGCCGTCGTTG
CTCGAAGTAGTTACAAAAGAGGCCCTCTGGTCTCTCTTTAAATTAGTTAG
TTTTTGTTGTCAGGAGGAATGTAAAATACATGGACAGAGGTGTGTATGTA
TTTGTGCACAAATATGCATGAGTAGATACATACATGCGGTTTTCGCTTCC
TCCCAACCTCTTGTTCCTCCAAATCCCTGCTCTTCTAGCCTCTTTCCCTC
CTCCCTCGATCTTCTCCCTCCTTCCTGTGTCCCCTCAAACGCCCCCGACG
CCCAAGACACGAAGTCCCTCCCGAAGACTCAACACCTGTAGCTCGCTTAA
TTTCTCTTCCAAGGCTCCCTCCACCCCCCCAACCACCCGCGCCACCAGCT
GGGCAAAGCGTGCGTCCGCCTGAACAGCGGCCTTGACCTCCTCCTTCCCC
TCGCAGGCCTGGGCCAAGCGCGTGACGAGAATTACCATGTTGTTGGCGTC
CAGAGGGCCCTTTTCAAGAAGCCCCAAGAGCTTGTGCGGGTTATTCCCAG
CGTCGACAATCAGGCCGCGCGTGCGCCATGCCGTCAAAGCCTCTTGCTTG
CTCGCAGCATCGGCCGATCGCGAAGCAAGAGTTGGGATTACGGAAAGAGG
ATGGGGAACTTCGGCGGCGGTCGAATGAAGACGGGAGGAGACGACAGAAA
GAGCTGTGGGTTGAAGAGGACGGGTAGCGTGGGAGACGCATGAGTGTATG
CGGCTTGTATTCCCGAATCTCCTTAGAATCTCCCCTCCCCGTCTCTCACC
TCCTCCTCCTCCTCCTCCTCCTCACCATCGAAGAGTCTCTCCCTTACGCC
TATCGCGCGCGCCGAATACACACATCAAGCCTCACTATTTCACTCCTGCC
TCGTCAAACTGGTACTTACCCTTGACAGTGGTGGAAGGAGGAGCGGGGGT
AGGACCCGTGAGGACAAGGCGGCTGATTAAGCGGCGACTCCCGGTGGAGA
ACATCAAAGGTTATGGCTTGGGTGTCTGT
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protein sequence of jgi.p|Nanoce1779_2|573467

>mRNA_1785-protein ID=mRNA_1785-protein|Name=jgi.p|Nanoce1779_2|573467|organism=Nannochloropsis oceanica|type=polypeptide|length=111bp
MLSSIWLLLLLPSLLEVVTKEALWSLFKLVSFCCQEECKIHGQRCVCICA
QICMSRYIHAVFASSQPLVPPNPCSSSLFPSSLDLLPPSCVPSNAPDAQD
TKSLPKTQHL*
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mRNA from alignment at scaffold_1:1513932..1515810-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1785 ID=mRNA_1785|Name=jgi.p|Nanoce1779_2|573467|organism=Nannochloropsis oceanica|type=mRNA|length=1879bp|location=Sequence derived from alignment at scaffold_1:1513932..1515810- (Nannochloropsis oceanica)
TTACCTTACTGTGGTTGATTTTCCTTTTTTCATTTTTTCAAGATTTTAAA
TTTTGTATAACCGGCAACTGCCTTTTCTGCTTTTGAACTTCCTTTTCTAC
TGCTACTTCTTTCTCTCGTTCCGACATGTTTAATCGCCCTAACTTCTTGC
GATGAAGTTAGATAAATAATGAATCGATTGAAATGCACCATAAAACTGAT
GTTGCTGTACCTGTTGCTGCTGCTGCTGCATATACCCACCCATCCACCCA
CACACGAACACGCAAGAAAAGCTCACCGCCCTTTCCCTTGGAAATGTTAT
ATCCTCTTATCTCTTGTTAGCGTGTAATTCTCGTATTTCGATGCGCGCGA
AATCACGAAAAGTCTGTCGTTGTGAGAGCGTCTCTCTGAGTGGGTGTCTG
TGCGTGCGTGCTGGTATCTCCTTCGTGTCTCGTTCTCATCTCATTTCCTC
CTGTCGACAATACTCAATGTTGCTGCTGCTGGTGGAGCTATTTTTGTAGT
CCTATGCGGCTGCTGGTCGGAATGAAATAATCCATAAAGGGACGAAAGAA
ATAACGAGAAAGCTCCTTCCCTACTTCGCTAGCTCTCTTTTCCCACCTTT
TTCTTATGAATTGCGCAAGGGTAATCGCACGAAGAGGGGGGCAACGAGTA
CACAAATAAGTGTATCGATGAGAAATAGGTTCACAAACAGGTGCGGCCAC
ACGCTGATATGACTGTATAGCTATTTATGTAGAAAAAGGACAGGGAGAAG
GACAAGGAAGTCTCTGTCTTCGCATGCACGCGGGCGGGACACACTTTGAC
CTAGAGCTGCCGCGCACTTCCTGTTACTACCTCTGATATTGCCTATTGCT
GGATTTATATGTTGTCGTCAATATGGCTCCTGTTGCTACTGCCGTCGTTG
CTCGAAGTAGTTACAAAAGAGGCCCTCTGGTCTCTCTTTAAATTAGTTAG
TTTTTGTTGTCAGGAGGAATGTAAAATACATGGACAGAGGTGTGTATGTA
TTTGTGCACAAATATGCATGAGTAGATACATACATGCGGTTTTCGCTTCC
TCCCAACCTCTTGTTCCTCCAAATCCCTGCTCTTCTAGCCTCTTTCCCTC
CTCCCTCGATCTTCTCCCTCCTTCCTGTGTCCCCTCAAACGCCCCCGACG
CCCAAGACACGAAGTCCCTCCCGAAGACTCAACACCTGTAGCTCGCTTAA
TTTCTCTTCCAAGGCTCCCTCCACCCCCCCAACCACCCGCGCCACCAGCT
GGGCAAAGCGTGCGTCCGCCTGAACAGCGGCCTTGACCTCCTCCTTCCCC
TCGCAGGCCTGGGCCAAGCGCGTGACGAGAATTACCATGTTGTTGGCGTC
CAGAGGGCCCTTTTCAAGAAGCCCCAAGAGCTTGTGCGGGTTATTCCCAG
CGTCGACAATCAGGCCGCGCGTGCGCCATGCCGTCAAAGCCTCTTGCTTG
CTCGCAGCATCGGCCGATCGCGAAGCAAGAGTTGGGATTACGGAAAGAGG
ATGGGGAACTTCGGCGGCGGTCGAATGAAGACGGGAGGAGACGACAGAAA
GAGCTGTGGGTTGAAGAGGACGGGTAGCGTGGGAGACGCATGAGTGTATG
CGGCTTGTATTCCCGAATCTCCTTAGAATCTCCCCTCCCCGTCTCTCACC
TCCTCCTCCTCCTCCTCCTCCTCACCATCGAAGAGTCTCTCCCTTACGCC
TATCGCGCGCGCCGAATACACACATCAAGCCTCACTATTTCACTCCTGCC
TCGTCAAACTGGTACTTACCCTTGACAGTGGTGGAAGGAGGAGCGGGGGT
AGGACCCGTGAGGACAAGGCGGCTGATTAAGCGGCGACTCCCGGTGGAGA
ACATCAAAGGTTATGGCTTGGGTGTCTGT
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Coding sequence (CDS) from alignment at scaffold_1:1513932..1515810-

>mRNA_1785 ID=mRNA_1785|Name=jgi.p|Nanoce1779_2|573467|organism=Nannochloropsis oceanica|type=CDS|length=333bp|location=Sequence derived from alignment at scaffold_1:1513932..1515810- (Nannochloropsis oceanica)
ATGTTGTCGTCAATATGGCTCCTGTTGCTACTGCCGTCGTTGCTCGAAGT
AGTTACAAAAGAGGCCCTCTGGTCTCTCTTTAAATTAGTTAGTTTTTGTT
GTCAGGAGGAATGTAAAATACATGGACAGAGGTGTGTATGTATTTGTGCA
CAAATATGCATGAGTAGATACATACATGCGGTTTTCGCTTCCTCCCAACC
TCTTGTTCCTCCAAATCCCTGCTCTTCTAGCCTCTTTCCCTCCTCCCTCG
ATCTTCTCCCTCCTTCCTGTGTCCCCTCAAACGCCCCCGACGCCCAAGAC
ACGAAGTCCCTCCCGAAGACTCAACACCTGTAG
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Synonyms
Publications