jgi.p|Nanoce1779_2|573466, mRNA_1784 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|573466
Unique NamemRNA_1784
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2165
Alignment locationscaffold_1:1513430..1515810 +

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Properties
Property NameValue
TranscriptId573552
TrackFilteredModels2
ProteinId573466
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:1513430..1515810 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573466gene_1784Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573466mRNA_1784-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1784CDS_1784Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1784 ID=mRNA_1784|Name=jgi.p|Nanoce1779_2|573466|organism=Nannochloropsis oceanica|type=mRNA|length=2165bp
CCGACAGGGGAAACAAATTGGAGGGCCACTGTCCTTTTTTTATCAATCAA
CTAGTCTTTAGTTAAAATGTTTGATGTACATCCCCAACCCTTACGCACTC
TATGTCGACTGCAAGCCCTATTTTGTAGTGTAACTCACACTTTGAAGGTG
TCAACGTGGCTATGGACGATCACAGCTGATGGAACTGTTTGACGTCTGCT
GCCTTCCTCCTGCTTCCGAGTCTCGCTCTCTTCAGCACCACACAAAGTTG
GGGTCACGCCTGGCAGCCTTCATAGCCATTCATTCTAAGCCCATTCTTCC
CACATCACCTACTTTATGTTTTGGCTTGTGCGTACTGACTCATGTGTTTG
TCACATGCAAAAGTGTACATTTCCAGAAAGCACAGCACCACGAACAGCTA
TCTTTCCAGCAACAGAACAAACATCAAACACAGCACTCTCAATCTTGCTG
GCTAGCCTCAGCAGCCTTCAAATTTTACTCAACTAGCTACCTACTCACGC
TTACAGACACCCAAGCCATAACCTTTGATGTTCTCCACCGGGAGTCGCCG
CTTAATCAGCCGCCTTGTCCTCACGGGTCCTACCCCCGCTCCTCCTTCCA
CCACTGTCAAGGCTCTTTCTGTCGTCTCCTCCCGTCTTCATTCGACCGCC
GCCGAAGTTCCCCATCCTCTTTCCGTAATCCCAACTCTTGCTTCGCGATC
GGCCGATGCTGCGAGCAAGCAAGAGGCTTTGACGGCATGGCGCACGCGCG
GCCTGATTGTCGACGCTGGGAATAACCCGCACAAGCTCTTGGGGCTTCTT
GAAAAGGGCCCTCTGGACGCCAACAACATGGTAATTCTCGTCACGCGCTT
GGCCCAGGCCTGCGAGGGGAAGGAGGAGGTCAAGGCCGCTGTTCAGGCGG
ACGCACGCTTTGCCCAGCTGGTGGCGCGGGTGGTTGGGGGGGTGGAGGGA
GCCTTGGAAGAGAAATTAAGCGAGCTACAGGTGTTGAGTCTTCGGGAGGG
ACTTCGTGTCTTGGGCGTCGGGGGCGTTTGAGGGGACACAGGAAGGAGGG
AGAAGATCGAGGGAGGAGGGAAAGAGGCTAGAAGAGCAGGGATTTGGAGG
AACAAGAGGTTGGGAGGAAGCGAAAACCGCATGTATGTATCTACTCATGC
ATATTTGTGCACAAATACATACACACCTCTGTCCATGTATTTTACATTCC
TCCTGACAACAAAAACTAACTAATTTAAAGAGAGACCAGAGGGCCTCTTT
TGTAACTACTTCGAGCAACGACGGCAGTAGCAACAGGAGCCATATTGACG
ACAACATATAAATCCAGCAATAGGCAATATCAGAGGTAGTAACAGGAAGT
GCGCGGCAGCTCTAGGTCAAAGTGTGTCCCGCCCGCGTGCATGCGAAGAC
AGAGACTTCCTTGTCCTTCTCCCTGTCCTTTTTCTACATAAATAGCTATA
CAGTCATATCAGCGTGTGGCCGCACCTGTTTGTGAACCTATTTCTCATCG
ATACACTTATTTGTGTACTCGTTGCCCCCCTCTTCGTGCGATTACCCTTG
CGCAATTCATAAGAAAAAGGTGGGAAAAGAGAGCTAGCGAAGTAGGGAAG
GAGCTTTCTCGTTATTTCTTTCGTCCCTTTATGGATTATTTCATTCCGAC
CAGCAGCCGCATAGGACTACAAAAATAGCTCCACCAGCAGCAGCAACATT
GAGTATTGTCGACAGGAGGAAATGAGATGAGAACGAGACACGAAGGAGAT
ACCAGCACGCACGCACAGACACCCACTCAGAGAGACGCTCTCACAACGAC
AGACTTTTCGTGATTTCGCGCGCATCGAAATACGAGAATTACACGCTAAC
AAGAGATAAGAGGATATAACATTTCCAAGGGAAAGGGCGGTGAGCTTTTC
TTGCGTGTTCGTGTGTGGGTGGATGGGTGGGTATATGCAGCAGCAGCAGC
AACAGGTACAGCAACATCAGTTTTATGGTGCATTTCAATCGATTCATTAT
TTATCTAACTTCATCGCAAGAAGTTAGGGCGATTAAACATGTCGGAACGA
GAGAAAGAAGTAGCAGTAGAAAAGGAAGTTCAAAAGCAGAAAAGGCAGTT
GCCGGTTATACAAAATTTAAAATCTTGAAAAAATGAAAAAAGGAAAATCA
ACCACAGTAAGGTAA
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protein sequence of jgi.p|Nanoce1779_2|573466

>mRNA_1784-protein ID=mRNA_1784-protein|Name=jgi.p|Nanoce1779_2|573466|organism=Nannochloropsis oceanica|type=polypeptide|length=199bp
MELFDVCCLPPASESRSLQHHTKLGSRLAAFIAIHSKPILPTSPTLCFGL
CVLTHVFVTCKSVHFQKAQHHEQLSFQQQNKHQTQHSQSCWLASAAFKFY
STSYLLTLTDTQAITFDVLHRESPLNQPPCPHGSYPRSSFHHCQGSFCRL
LPSSFDRRRSSPSSFRNPNSCFAIGRCCEQARGFDGMAHARPDCRRWE*
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mRNA from alignment at scaffold_1:1513430..1515810+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1784 ID=mRNA_1784|Name=jgi.p|Nanoce1779_2|573466|organism=Nannochloropsis oceanica|type=mRNA|length=2381bp|location=Sequence derived from alignment at scaffold_1:1513430..1515810+ (Nannochloropsis oceanica)
CCGACAGGGGAAACAAATTGGAGGGCCACTGTCCTTTTTTTATCAATCAA
CTAGTCTTTAGTTAAAATGTTTGATGTACATCCCCAACCCTTACGCACTC
TATGTCGACTGCAAGCCCTATTTTGTAGTGTAACTCACACTTTGAAGGTG
TCAACGTGGCTATGGACGATCACAGCTGATGGAACTGTTTGACGTCTGCT
GCCTTCCTCCTGCTTCCGAGTCTCGCTCTCTTCAGCACCACACAAAGTTG
GGGTCACGCCTGGCAGCCTTCATAGCCATTCATTCTAAGCCCATTCTTCC
CACATCACCTACTTTATGTTTTGGCTTGTGCGTACTGACTCATGTGTTTG
TCACATGCAAAAGTGTACATTTCCAGAAAGCACAGCACCACGAACAGCTA
TCTTTCCAGCAACAGAACAAACATCAAACACAGCACTCTCAATCTTGCTG
GCTAGCCTCAGCAGCCTTCAAATTTTACTCAACTAGCTACCTACTCACGC
TTACAGACACCCAAGCCATAACCTTTGATGTTCTCCACCGGGAGTCGCCG
CTTAATCAGCCGCCTTGTCCTCACGGGTCCTACCCCCGCTCCTCCTTCCA
CCACTGTCAAGGGTAAGTACCAGTTTGACGAGGCAGGAGTGAAATAGTGA
GGCTTGATGTGTGTATTCGGCGCGCGCGATAGGCGTAAGGGAGAGACTCT
TCGATGGTGAGGAGGAGGAGGAGGAGGAGGAGGTGAGAGACGGGGAGGGG
AGATTCTAAGGAGATTCGGGAATACAAGCCGCATACACTCATGCGTCTCC
CACGCTACCCGTCCTCTTCAACCCACAGCTCTTTCTGTCGTCTCCTCCCG
TCTTCATTCGACCGCCGCCGAAGTTCCCCATCCTCTTTCCGTAATCCCAA
CTCTTGCTTCGCGATCGGCCGATGCTGCGAGCAAGCAAGAGGCTTTGACG
GCATGGCGCACGCGCGGCCTGATTGTCGACGCTGGGAATAACCCGCACAA
GCTCTTGGGGCTTCTTGAAAAGGGCCCTCTGGACGCCAACAACATGGTAA
TTCTCGTCACGCGCTTGGCCCAGGCCTGCGAGGGGAAGGAGGAGGTCAAG
GCCGCTGTTCAGGCGGACGCACGCTTTGCCCAGCTGGTGGCGCGGGTGGT
TGGGGGGGTGGAGGGAGCCTTGGAAGAGAAATTAAGCGAGCTACAGGTGT
TGAGTCTTCGGGAGGGACTTCGTGTCTTGGGCGTCGGGGGCGTTTGAGGG
GACACAGGAAGGAGGGAGAAGATCGAGGGAGGAGGGAAAGAGGCTAGAAG
AGCAGGGATTTGGAGGAACAAGAGGTTGGGAGGAAGCGAAAACCGCATGT
ATGTATCTACTCATGCATATTTGTGCACAAATACATACACACCTCTGTCC
ATGTATTTTACATTCCTCCTGACAACAAAAACTAACTAATTTAAAGAGAG
ACCAGAGGGCCTCTTTTGTAACTACTTCGAGCAACGACGGCAGTAGCAAC
AGGAGCCATATTGACGACAACATATAAATCCAGCAATAGGCAATATCAGA
GGTAGTAACAGGAAGTGCGCGGCAGCTCTAGGTCAAAGTGTGTCCCGCCC
GCGTGCATGCGAAGACAGAGACTTCCTTGTCCTTCTCCCTGTCCTTTTTC
TACATAAATAGCTATACAGTCATATCAGCGTGTGGCCGCACCTGTTTGTG
AACCTATTTCTCATCGATACACTTATTTGTGTACTCGTTGCCCCCCTCTT
CGTGCGATTACCCTTGCGCAATTCATAAGAAAAAGGTGGGAAAAGAGAGC
TAGCGAAGTAGGGAAGGAGCTTTCTCGTTATTTCTTTCGTCCCTTTATGG
ATTATTTCATTCCGACCAGCAGCCGCATAGGACTACAAAAATAGCTCCAC
CAGCAGCAGCAACATTGAGTATTGTCGACAGGAGGAAATGAGATGAGAAC
GAGACACGAAGGAGATACCAGCACGCACGCACAGACACCCACTCAGAGAG
ACGCTCTCACAACGACAGACTTTTCGTGATTTCGCGCGCATCGAAATACG
AGAATTACACGCTAACAAGAGATAAGAGGATATAACATTTCCAAGGGAAA
GGGCGGTGAGCTTTTCTTGCGTGTTCGTGTGTGGGTGGATGGGTGGGTAT
ATGCAGCAGCAGCAGCAACAGGTACAGCAACATCAGTTTTATGGTGCATT
TCAATCGATTCATTATTTATCTAACTTCATCGCAAGAAGTTAGGGCGATT
AAACATGTCGGAACGAGAGAAAGAAGTAGCAGTAGAAAAGGAAGTTCAAA
AGCAGAAAAGGCAGTTGCCGGTTATACAAAATTTAAAATCTTGAAAAAAT
GAAAAAAGGAAAATCAACCACAGTAAGGTAA
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Coding sequence (CDS) from alignment at scaffold_1:1513430..1515810+

>mRNA_1784 ID=mRNA_1784|Name=jgi.p|Nanoce1779_2|573466|organism=Nannochloropsis oceanica|type=CDS|length=1194bp|location=Sequence derived from alignment at scaffold_1:1513430..1515810+ (Nannochloropsis oceanica)
ATGGAACTGTTTGACGTCTGCTGCCTTCCTCCTGCTTCCGAGTCTCGCTC
TCTTCAGCACCACACAAAGTTGGGGTCACGCCTGGCAGCCTTCATAGCCA
TTCATTCTAAGCCCATTCTTCCCACATCACCTACTTTATGTTTTGGCTTG
TGCGTACTGACTCATGTGTTTGTCACATGCAAAAGTGTACATTTCCAGAA
AGCACAGCACCACGAACAGCTATCTTTCCAGCAACAGAACAAACATCAAA
CACAGCACTCTCAATCTTGCTGGCTAGCCTCAGCAGCCTTCAAATTTTAC
TCAACTAGCTACCTACTCACGCTTACAGACACCCAAGCCATAACCTTTGA
TGTTCTCCACCGGGAGTCGCCGCTTAATCAGCCGCCTTGTCCTCACGGGT
CCTACCCCCGCTCCTCCTTCCACCACTGTCAAGGCTCTTTCTGTCGTCTC
CTCCCGTCTTCATTCGACCGCCGCCGAAGTTCCCCATCCTCTTTCCGTAA
TCCCAACTCTTGCTTCGCGATCGGCCGATGCTGCGAGCAAGCAAGAGGCT
TTGACGGCATGGCGCACGCGCGGCCTGATTGTCGACGCTGGGAATAAATG
GAACTGTTTGACGTCTGCTGCCTTCCTCCTGCTTCCGAGTCTCGCTCTCT
TCAGCACCACACAAAGTTGGGGTCACGCCTGGCAGCCTTCATAGCCATTC
ATTCTAAGCCCATTCTTCCCACATCACCTACTTTATGTTTTGGCTTGTGC
GTACTGACTCATGTGTTTGTCACATGCAAAAGTGTACATTTCCAGAAAGC
ACAGCACCACGAACAGCTATCTTTCCAGCAACAGAACAAACATCAAACAC
AGCACTCTCAATCTTGCTGGCTAGCCTCAGCAGCCTTCAAATTTTACTCA
ACTAGCTACCTACTCACGCTTACAGACACCCAAGCCATAACCTTTGATGT
TCTCCACCGGGAGTCGCCGCTTAATCAGCCGCCTTGTCCTCACGGGTCCT
ACCCCCGCTCCTCCTTCCACCACTGTCAAGGCTCTTTCTGTCGTCTCCTC
CCGTCTTCATTCGACCGCCGCCGAAGTTCCCCATCCTCTTTCCGTAATCC
CAACTCTTGCTTCGCGATCGGCCGATGCTGCGAGCAAGCAAGAGGCTTTG
ACGGCATGGCGCACGCGCGGCCTGATTGTCGACGCTGGGAATAA
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Synonyms
Publications