jgi.p|Nanoce1779_2|562503, mRNA_1783 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|562503
Unique Name	mRNA_1783
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1830
Alignment location	scaffold_1:1510648..1512477 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	562589
Track	FilteredModels2
ProteinId	562503

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:1510648..1512477 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|562503	gene_1783	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|562503	mRNA_1783-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1783	CDS_1783	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:1510648..1512477+
coding sequence from alignment at scaffold_1:1510648..1512477+

mRNA sequence

>mRNA_1783 ID=mRNA_1783|Name=jgi.p|Nanoce1779_2|562503|organism=Nannochloropsis oceanica|type=mRNA|length=1830bp
ATGCCGTTTTCCTCTCTTCTCCTGTACCTTAGCCTCCTCCTGCTCCCCGC
AGCCTCGACCTCCTGTACCTCCGGCCCTCCTTTTCGAGGTAAAGGTCTCC
AGTTGGATAAGACGTCACTATCCTTTGACTTTATTGTGGTGGGTGCAGGC
AATGCTGGGGCTGTCGTGGCGGCCCGCTTGTCGGAAGACCCGTGTGTCCG
CGTGCTCCTCCTTGAGGAAGGCAACTACTCGCAAGACAGTGGACGAGACA
GCACCAGCACACATCAGAACTGGATCGCGGAGCAAATTATCACTCCACGT
CGTGACTATCGGACATGGGCCTTGCCTGCGTTGACCCATCAGCTCAGCAC
TGAAGCCAATCCGGCTGTCAATAATCGCAGCGGCATTCTCCTAGGCCCGG
TGGTGACGGGCAAGGCATTGGGCGGGTCAACGGTTGTCAACATTGGTGCT
TACACAAGACCTGAGCCGGCATACTTCAATCGATGGGGTATTAAAAATTG
GAGCGGCGACGAAACCGAAGCCTATTTTCATAAGCAGGAGGATCACGAGG
ATCCTCATCCGGAGTACGGCAAGGGAGGACCTGTGCATGTGGAGCATGGC
GACGCGCAGACCGTGTACCCGTACCTGCACCAAGCCTCTCTCAACATGGA
CCCCCCTTTGCGCAGTAATTCTGCGGGCCGTTTGTCATACGGTGTACCGC
AGGTGTACCGTGTCATTGAGAACGGGAGGCGCGTGGACGCCTACACCGCC
TACCTGCGGCCTGTAGTTGCAGAGCGCAACGATAATCTGGTGATGCGCAC
CGGGGCCCGCGTCACGCGAGTTCTATTCGACAAAAATAAACGTGCTACAG
GTGTCCTGTACACCGTGGCAGAATCGGGCGATGTTGACTCCTCAACTGGC
ATAAATCGTAACGACCCGCGCCTCGGCAGCCGGGGCCGGGAAGCCGCTGC
CCGTGTAACACTTCATGCCCATGCCACGCGAGAGGTTGTTTTATGTGCGG
GCGTTTTTTTCACGCCCCATATACTCCTTAAATCAGGTGTCGGACCTGCT
GCGGAGCTCGAGGCCCTGGGCGTACCCGTGGTAGCAAACGTGTCGGGGGT
AGGGAAGCACTTACTGGCCCGAACAAACGTGCTCTTCTTCTACGGGAATG
GCTCGGTGGTGCCGGAAATGAATCCTTTCGTTCTGCGAGATCCGGCAACC
ACGGAGATGTATGATTTAGAGCACCGAGGTCCCTATAGCTTGGGGGCTCT
GGGCATCTACAGCGTTGTCAAGGGCCGTTACCCTGGAGACGACGATTACA
TCCTGTTCATGACGGACGTGATCCCCGAAGTGGCCCCACGCATGGTCGCC
TTGGGCTGCGCCAATTTGCGGGTTCATGGACCTGGTGGACAGGTACTGCT
GGACCCCACTGATCCCTTAGGGGCAAAACACCCGCGCATCCAACTCAACA
TGGCAGCTGCGGAGGAAGACCGGCGGGCTTTGCGGCACTGCTTGCGGGAT
GTGCGGGATATGATGGCCGAACCCATCATGACCACCAATGGATTTTACGA
AATTTTCCCGACGCATCGACTGGTGGAGGATACAGATAAGGCCCTGGATC
GCTGGATCAGTAGGGGCTACACGTTCTATAGCTGGCACGCGACGAGCACG
GCCCGAATGGGAGACGTGCTGGATGATCGTATGCGTGTGCAAGGGGGCGT
TCAAGGCTTGCGGGTGGTAGATGCAAGTGCAGTGCCAGACATGATCGAGG
CTGGGCCAATGGCCACGTTGTTTATGCTGGGGGAGCGGGCCGCGGATCTG
ATCAAGGAAGACTATCGGGAAAATACATAG

protein sequence of jgi.p|Nanoce1779_2|562503

>mRNA_1783-protein ID=mRNA_1783-protein|Name=jgi.p|Nanoce1779_2|562503|organism=Nannochloropsis oceanica|type=polypeptide|length=610bp
MPFSSLLLYLSLLLLPAASTSCTSGPPFRGKGLQLDKTSLSFDFIVVGAG
NAGAVVAARLSEDPCVRVLLLEEGNYSQDSGRDSTSTHQNWIAEQIITPR
RDYRTWALPALTHQLSTEANPAVNNRSGILLGPVVTGKALGGSTVVNIGA
YTRPEPAYFNRWGIKNWSGDETEAYFHKQEDHEDPHPEYGKGGPVHVEHG
DAQTVYPYLHQASLNMDPPLRSNSAGRLSYGVPQVYRVIENGRRVDAYTA
YLRPVVAERNDNLVMRTGARVTRVLFDKNKRATGVLYTVAESGDVDSSTG
INRNDPRLGSRGREAAARVTLHAHATREVVLCAGVFFTPHILLKSGVGPA
AELEALGVPVVANVSGVGKHLLARTNVLFFYGNGSVVPEMNPFVLRDPAT
TEMYDLEHRGPYSLGALGIYSVVKGRYPGDDDYILFMTDVIPEVAPRMVA
LGCANLRVHGPGGQVLLDPTDPLGAKHPRIQLNMAAAEEDRRALRHCLRD
VRDMMAEPIMTTNGFYEIFPTHRLVEDTDKALDRWISRGYTFYSWHATST
ARMGDVLDDRMRVQGGVQGLRVVDASAVPDMIEAGPMATLFMLGERAADL
IKEDYRENT*

mRNA from alignment at scaffold_1:1510648..1512477+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1783 ID=mRNA_1783|Name=jgi.p|Nanoce1779_2|562503|organism=Nannochloropsis oceanica|type=mRNA|length=1830bp|location=Sequence derived from alignment at scaffold_1:1510648..1512477+ (Nannochloropsis oceanica)
ATGCCGTTTTCCTCTCTTCTCCTGTACCTTAGCCTCCTCCTGCTCCCCGC
AGCCTCGACCTCCTGTACCTCCGGCCCTCCTTTTCGAGGTAAAGGTCTCC
AGTTGGATAAGACGTCACTATCCTTTGACTTTATTGTGGTGGGTGCAGGC
AATGCTGGGGCTGTCGTGGCGGCCCGCTTGTCGGAAGACCCGTGTGTCCG
CGTGCTCCTCCTTGAGGAAGGCAACTACTCGCAAGACAGTGGACGAGACA
GCACCAGCACACATCAGAACTGGATCGCGGAGCAAATTATCACTCCACGT
CGTGACTATCGGACATGGGCCTTGCCTGCGTTGACCCATCAGCTCAGCAC
TGAAGCCAATCCGGCTGTCAATAATCGCAGCGGCATTCTCCTAGGCCCGG
TGGTGACGGGCAAGGCATTGGGCGGGTCAACGGTTGTCAACATTGGTGCT
TACACAAGACCTGAGCCGGCATACTTCAATCGATGGGGTATTAAAAATTG
GAGCGGCGACGAAACCGAAGCCTATTTTCATAAGCAGGAGGATCACGAGG
ATCCTCATCCGGAGTACGGCAAGGGAGGACCTGTGCATGTGGAGCATGGC
GACGCGCAGACCGTGTACCCGTACCTGCACCAAGCCTCTCTCAACATGGA
CCCCCCTTTGCGCAGTAATTCTGCGGGCCGTTTGTCATACGGTGTACCGC
AGGTGTACCGTGTCATTGAGAACGGGAGGCGCGTGGACGCCTACACCGCC
TACCTGCGGCCTGTAGTTGCAGAGCGCAACGATAATCTGGTGATGCGCAC
CGGGGCCCGCGTCACGCGAGTTCTATTCGACAAAAATAAACGTGCTACAG
GTGTCCTGTACACCGTGGCAGAATCGGGCGATGTTGACTCCTCAACTGGC
ATAAATCGTAACGACCCGCGCCTCGGCAGCCGGGGCCGGGAAGCCGCTGC
CCGTGTAACACTTCATGCCCATGCCACGCGAGAGGTTGTTTTATGTGCGG
GCGTTTTTTTCACGCCCCATATACTCCTTAAATCAGGTGTCGGACCTGCT
GCGGAGCTCGAGGCCCTGGGCGTACCCGTGGTAGCAAACGTGTCGGGGGT
AGGGAAGCACTTACTGGCCCGAACAAACGTGCTCTTCTTCTACGGGAATG
GCTCGGTGGTGCCGGAAATGAATCCTTTCGTTCTGCGAGATCCGGCAACC
ACGGAGATGTATGATTTAGAGCACCGAGGTCCCTATAGCTTGGGGGCTCT
GGGCATCTACAGCGTTGTCAAGGGCCGTTACCCTGGAGACGACGATTACA
TCCTGTTCATGACGGACGTGATCCCCGAAGTGGCCCCACGCATGGTCGCC
TTGGGCTGCGCCAATTTGCGGGTTCATGGACCTGGTGGACAGGTACTGCT
GGACCCCACTGATCCCTTAGGGGCAAAACACCCGCGCATCCAACTCAACA
TGGCAGCTGCGGAGGAAGACCGGCGGGCTTTGCGGCACTGCTTGCGGGAT
GTGCGGGATATGATGGCCGAACCCATCATGACCACCAATGGATTTTACGA
AATTTTCCCGACGCATCGACTGGTGGAGGATACAGATAAGGCCCTGGATC
GCTGGATCAGTAGGGGCTACACGTTCTATAGCTGGCACGCGACGAGCACG
GCCCGAATGGGAGACGTGCTGGATGATCGTATGCGTGTGCAAGGGGGCGT
TCAAGGCTTGCGGGTGGTAGATGCAAGTGCAGTGCCAGACATGATCGAGG
CTGGGCCAATGGCCACGTTGTTTATGCTGGGGGAGCGGGCCGCGGATCTG
ATCAAGGAAGACTATCGGGAAAATACATAG

Coding sequence (CDS) from alignment at scaffold_1:1510648..1512477+

>mRNA_1783 ID=mRNA_1783|Name=jgi.p|Nanoce1779_2|562503|organism=Nannochloropsis oceanica|type=CDS|length=1830bp|location=Sequence derived from alignment at scaffold_1:1510648..1512477+ (Nannochloropsis oceanica)
ATGCCGTTTTCCTCTCTTCTCCTGTACCTTAGCCTCCTCCTGCTCCCCGC
AGCCTCGACCTCCTGTACCTCCGGCCCTCCTTTTCGAGGTAAAGGTCTCC
AGTTGGATAAGACGTCACTATCCTTTGACTTTATTGTGGTGGGTGCAGGC
AATGCTGGGGCTGTCGTGGCGGCCCGCTTGTCGGAAGACCCGTGTGTCCG
CGTGCTCCTCCTTGAGGAAGGCAACTACTCGCAAGACAGTGGACGAGACA
GCACCAGCACACATCAGAACTGGATCGCGGAGCAAATTATCACTCCACGT
CGTGACTATCGGACATGGGCCTTGCCTGCGTTGACCCATCAGCTCAGCAC
TGAAGCCAATCCGGCTGTCAATAATCGCAGCGGCATTCTCCTAGGCCCGG
TGGTGACGGGCAAGGCATTGGGCGGGTCAACGGTTGTCAACATTGGTGCT
TACACAAGACCTGAGCCGGCATACTTCAATCGATGGGGTATTAAAAATTG
GAGCGGCGACGAAACCGAAGCCTATTTTCATAAGCAGGAGGATCACGAGG
ATCCTCATCCGGAGTACGGCAAGGGAGGACCTGTGCATGTGGAGCATGGC
GACGCGCAGACCGTGTACCCGTACCTGCACCAAGCCTCTCTCAACATGGA
CCCCCCTTTGCGCAGTAATTCTGCGGGCCGTTTGTCATACGGTGTACCGC
AGGTGTACCGTGTCATTGAGAACGGGAGGCGCGTGGACGCCTACACCGCC
TACCTGCGGCCTGTAGTTGCAGAGCGCAACGATAATCTGGTGATGCGCAC
CGGGGCCCGCGTCACGCGAGTTCTATTCGACAAAAATAAACGTGCTACAG
GTGTCCTGTACACCGTGGCAGAATCGGGCGATGTTGACTCCTCAACTGGC
ATAAATCGTAACGACCCGCGCCTCGGCAGCCGGGGCCGGGAAGCCGCTGC
CCGTGTAACACTTCATGCCCATGCCACGCGAGAGGTTGTTTTATGTGCGG
GCGTTTTTTTCACGCCCCATATACTCCTTAAATCAGGTGTCGGACCTGCT
GCGGAGCTCGAGGCCCTGGGCGTACCCGTGGTAGCAAACGTGTCGGGGGT
AGGGAAGCACTTACTGGCCCGAACAAACGTGCTCTTCTTCTACGGGAATG
GCTCGGTGGTGCCGGAAATGAATCCTTTCGTTCTGCGAGATCCGGCAACC
ACGGAGATGTATGATTTAGAGCACCGAGGTCCCTATAGCTTGGGGGCTCT
GGGCATCTACAGCGTTGTCAAGGGCCGTTACCCTGGAGACGACGATTACA
TCCTGTTCATGACGGACGTGATCCCCGAAGTGGCCCCACGCATGGTCGCC
TTGGGCTGCGCCAATTTGCGGGTTCATGGACCTGGTGGACAGGTACTGCT
GGACCCCACTGATCCCTTAGGGGCAAAACACCCGCGCATCCAACTCAACA
TGGCAGCTGCGGAGGAAGACCGGCGGGCTTTGCGGCACTGCTTGCGGGAT
GTGCGGGATATGATGGCCGAACCCATCATGACCACCAATGGATTTTACGA
AATTTTCCCGACGCATCGACTGGTGGAGGATACAGATAAGGCCCTGGATC
GCTGGATCAGTAGGGGCTACACGTTCTATAGCTGGCACGCGACGAGCACG
GCCCGAATGGGAGACGTGCTGGATGATCGTATGCGTGTGCAAGGGGGCGT
TCAAGGCTTGCGGGTGGTAGATGCAAGTGCAGTGCCAGACATGATCGAGG
CTGGGCCAATGGCCACGTTGTTTATGCTGGGGGAGCGGGCCGCGGATCTG
ATCAAGGAAGACTATCGGGAAAATACATAG

Synonyms

Publications