jgi.p|Nanoce1779_2|624542, mRNA_1782 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|624542
Unique Name	mRNA_1782
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	933
Alignment location	scaffold_1:1508066..1510312 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	624628
Track	FilteredModels2
ProteinId	624542

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:1508066..1510312 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|624542	gene_1782	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|624542	mRNA_1782-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1782	CDS_1782	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:1508066..1510312+
coding sequence from alignment at scaffold_1:1508066..1510312+

mRNA sequence

>mRNA_1782 ID=mRNA_1782|Name=jgi.p|Nanoce1779_2|624542|organism=Nannochloropsis oceanica|type=mRNA|length=933bp
ATGCCACTGCTGCCAGAGGATGAGGCAAGCTCGGCCACGTTGATCCTCGC
CTCCAAAAGCCCTCGGCGGCAAGAGATTATGCAGCTGATGGGCTTTAGTC
CCGACGAATTTTCGGTAATGCCGAGCGACTTTCCCGAGGACTTGGACAAA
AAAGCCTTTGCCAATCCCGCGGACTACGCCCAGAAAAACGCTGAACTCAA
GGCTCTAGATATAGCGACCAAGCTCTTTAGAGAGGTAGACGGAGAGGTAA
ATACGATTCTTGTCATTGGCTCCGATACCATCGTGGACCTTGATGGCACC
ATTTTGGAAAAGCCTGACGATGAGGCGCATGCGCATGCCATGCTTTCCTC
CCTCTCCGGACGACAACACCTGGTGCATTCAGGCGTGGCCGTGTTCAGCT
CCAAGGGCCCCCGAAGCAAAACAAATGGAACTCCGTTGCCTGTTGTGTCG
TTCTGCGAGTCGACACGGGTGACTTTCGCGACCTTGACCTCGGAGGAAAT
ATGGAGTTACGTCCGCTCCGGTGAGCCGATGGATAAGGCGGGTGCCTATG
GAATCCAGGGGCTTGGGGGGCAGATGGTGCGAGGGATCGACGGCTGCTAT
TTTACTGTCATGGGGTTGCCCATGCATAGGCTGAGCGCCGCGCTGGCCCA
AGTCATCATAAAAGGATTGCTGTAGAGTGTGAAATGTAGAACAAATGATT
ATCCAACAGAATAGAAAAGAATTACAAGTACTGAGTGCCAGACTCATAAC
GAGGTGGATATGTCTCATCCACCGGGCTTTGCTGGTATGATAACCCCTTC
AATAATGCCTCTGAGGCATTCCTACGTCTGAATTAGGTGTAGCAGGCGAT
AAGCACCTATAGATTTTGGCATACTGCACCAGTTAAGTATTCTAGCAAGA
CAAAGGCAGAATCACCACAACTCCGTCTCATTA

protein sequence of jgi.p|Nanoce1779_2|624542

>mRNA_1782-protein ID=mRNA_1782-protein|Name=jgi.p|Nanoce1779_2|624542|organism=Nannochloropsis oceanica|type=polypeptide|length=225bp
MPLLPEDEASSATLILASKSPRRQEIMQLMGFSPDEFSVMPSDFPEDLDK
KAFANPADYAQKNAELKALDIATKLFREVDGEVNTILVIGSDTIVDLDGT
ILEKPDDEAHAHAMLSSLSGRQHLVHSGVAVFSSKGPRSKTNGTPLPVVS
FCESTRVTFATLTSEEIWSYVRSGEPMDKAGAYGIQGLGGQMVRGIDGCY
FTVMGLPMHRLSAALAQVIIKGLL*

mRNA from alignment at scaffold_1:1508066..1510312+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1782 ID=mRNA_1782|Name=jgi.p|Nanoce1779_2|624542|organism=Nannochloropsis oceanica|type=mRNA|length=2247bp|location=Sequence derived from alignment at scaffold_1:1508066..1510312+ (Nannochloropsis oceanica)
ATGCCACTGCTGCCAGAGGATGAGGCAGTGTGACTGCTCCTGTTGCTGCT
GCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTAC
TACTACTGCTACAGCAGCCCGTCCAGATGTGGCGAGGACGAAGGCGTGGA
CGCAAGCTTCGCATGATGCTACCTCCACGTCCAACAAAGCTGGTAATAGT
GCGCAATGTGGGGTGCCGTGTTCGATGAGGAAGGGCTGCCAGAACAATCC
AAGTGCCGGGGGGGATAGAGGACGGAGGAAGGCTGCTGGGAATGAGGATG
GCACGGTGTCGGTGGCGGCCTGGGCAGAGATGTCAAATTGTGCCGAAGAC
TGTGCGCCTGTGCGTGTGCGCGCGGGGCTGTGCTGTGATCTGAAAGGGGT
TGCGTGTCGTGCAGGGGCGGAGTTGGATCGAATCAATAAAGCTGCCAGCT
GGCAAGCTTCTCTAAAATCAAACTATCCGTGACCGCGGTGCCGTCATACA
GAAATTCTTCCAATTCAACACCTAGGGCATGCTGCATTCCAATATGCTAC
ATCCCACCCCACTCAGCATCCACTCCCACAGCTTCCCAACCCTCCGCGCC
CTGCGAGTTTGGCTTTTTGCAATTCATTGAATGCATACTCTCCATCTCCG
GTCTTCCCAGAGCCCAAGCCGCCAGTTCCTTCTTATTGCCGCAGCCTCTG
TCTTGTCTTGGTACTCGCCGCCTACAGCGCTTGCGTTTGTGCTTCCTGCT
CATCGACTTCACCCTGCTTCCGCCTGCTTCAACACTATGTCCGCCTCATC
CCCATCCTCCACTCCCTCGGACACGTCCACCACACTCATCCCCCATTTGA
GCACCCTCAAGAGCTCGGCCACGTTGATCCTCGCCTCCAAAAGCCCTCGG
CGGCAAGAGATTATGCAGCTGATGGGCTTTAGTCCCGACGAATTTTCGGT
AATGCCGAGCGACTTTCCCGAGGACTTGGACAAAAAAGGTACCAACTTCA
TACGGAGGATGGACGAGGGAGAAAGGCAGGGAGGGAGGGATGGGGATATG
AAAGGGAATAGAGTAAGAGAGATGGGGATATGGAAGAGAATGGAGTAAGA
GATGCATGGTAGCGGGAGTTTCAGAGGGGAGGGGATGCATCAACTGTACT
CACTTAGTCATATGGTTGTCAACTCATCTCTTTCCCATTTCTTATTCCCT
TCCTCCTCCTTCCCCCACATGTCCTCCAGCCTTTGCCAATCCCGCGGACT
ACGCCCAGAAAAACGCTGAACTCAAGGCTCTAGATATAGCGACCAAGCTC
TTTAGAGAGGTAGACGGAGAGGTAAATACGATTCTTGTCATTGGCTCCGA
TACCATGTACGTGCCTCCAACAGAGGAAGAGAGGGAGAAAGAGACGGAAA
TAGGGTCATGCAGACTGAAGGAATTAATGAAAAGGTCCTTAATCTGCCGA
GCTTTGGCTAAATTATATCTCGGAGGGTACACCAAATAGACGATATGCGT
ACCATTCTGATTTTGATGCCATGTCTTTGCTTATCCCCCCTCTCCACCTC
TTTTCCCTCCCTCCCTCCCTCTTTACCATCGATCCCCTTTTCCAGCGTGG
ACCTTGATGGCACCATTTTGGAAAAGCCTGACGATGAGGCGCATGCGCAT
GCCATGCTTTCCTCCCTCTCCGGACGACAACACCTGGTGCATTCAGGCGT
GGCCGTGTTCAGCTCCAAGGGCCCCCGAAGCAAAACAAATGGAACTCCGT
TGCCTGTTGTGTCGTTCTGCGAGTCGACACGGGTGACTTTCGCGACCTTG
ACCTCGGAGGAAATATGGAGTTACGTCCGCTCCGGTGAGCCGATGGATAA
GGCGGGTGCCTATGGAATCCAGGGGCTTGGGGGGCAGATGGTGCGAGGGA
TCGACGGCTGCTATTTTACTGTCATGGGGTTGCCCATGCATAGGCTGAGC
GCCGCGCTGGCCCAAGTCATCATAAAAGGATTGCTGTAGAGTGTGAAATG
TAGAACAAATGATTATCCAACAGAATAGAAAAGAATTACAAGTACTGAGT
GCCAGACTCATAACGAGGTGGATATGTCTCATCCACCGGGCTTTGCTGGT
ATGATAACCCCTTCAATAATGCCTCTGAGGCATTCCTACGTCTGAATTAG
GTGTAGCAGGCGATAAGCACCTATAGATTTTGGCATACTGCACCAGTTAA
GTATTCTAGCAAGACAAAGGCAGAATCACCACAACTCCGTCTCATTA

Coding sequence (CDS) from alignment at scaffold_1:1508066..1510312+

>mRNA_1782 ID=mRNA_1782|Name=jgi.p|Nanoce1779_2|624542|organism=Nannochloropsis oceanica|type=CDS|length=2700bp|location=Sequence derived from alignment at scaffold_1:1508066..1510312+ (Nannochloropsis oceanica)
ATGCCACTGCTGCCAGAGGATGAGGCAAGCTCGGCCACGTTGATCCTCGC
CTCCAAAAGCCCTCGGCGGCAAGAGATTATGCAGCTGATGGGCTTTAGTC
CCGACGAATTTTCGGTAATGCCGAGCGACTTTCCCGAGGACTTGGACAAA
AAAGCCTTTGCCAATCCCGCGGACTACGCCCAGAAAAACGCTGAACTCAA
GGCTCTAGATATAGCGACCAAGCTCTTTAGAGAGGTAGACGGAGAGGTAA
ATACGATTCTTGTCATTGGCTCCGATACCATCGTGGACCTTGATGGCACC
ATTTTGGAAAAGCCTGACGATGAGGCGCATGCGCATGCCATGCTTTCCTC
CCTCTCCGGACGACAACACCTGGTGCATTCAGGCGTGGCCGTGTTCAGCT
CCAAGGGCCCCCGAAGCAAAACAAATGGAACTCCGTTGCCTGTTGTGTCG
TTCTGCGAGTCGACACGGGTGACTTTCGCGACCTTGACCTCGGAGGAAAT
ATGGAGTTACGTCCGCTCCGGTGAGCCGATGGATAAGGCGGGTGCCTATG
GAATCCAGGGGCTTGGGGGGCAGATGGTGCGAGGGATCGACGGCTGCTAT
TTTACTGTCATGGGGTTGCCCATGCATAGGCTGAGCGCCGCGCTGGCCCA
AGTCATCATAAAAGGATTGCTGTAGATGCCACTGCTGCCAGAGGATGAGG
CAAGCTCGGCCACGTTGATCCTCGCCTCCAAAAGCCCTCGGCGGCAAGAG
ATTATGCAGCTGATGGGCTTTAGTCCCGACGAATTTTCGGTAATGCCGAG
CGACTTTCCCGAGGACTTGGACAAAAAAGCCTTTGCCAATCCCGCGGACT
ACGCCCAGAAAAACGCTGAACTCAAGGCTCTAGATATAGCGACCAAGCTC
TTTAGAGAGGTAGACGGAGAGGTAAATACGATTCTTGTCATTGGCTCCGA
TACCATCGTGGACCTTGATGGCACCATTTTGGAAAAGCCTGACGATGAGG
CGCATGCGCATGCCATGCTTTCCTCCCTCTCCGGACGACAACACCTGGTG
CATTCAGGCGTGGCCGTGTTCAGCTCCAAGGGCCCCCGAAGCAAAACAAA
TGGAACTCCGTTGCCTGTTGTGTCGTTCTGCGAGTCGACACGGGTGACTT
TCGCGACCTTGACCTCGGAGGAAATATGGAGTTACGTCCGCTCCGGTGAG
CCGATGGATAAGGCGGGTGCCTATGGAATCCAGGGGCTTGGGGGGCAGAT
GGTGCGAGGGATCGACGGCTGCTATTTTACTGTCATGGGGTTGCCCATGC
ATAGGCTGAGCGCCGCGCTGGCCCAAGTCATCATAAAAGGATTGCTGTAG
ATGCCACTGCTGCCAGAGGATGAGGCAAGCTCGGCCACGTTGATCCTCGC
CTCCAAAAGCCCTCGGCGGCAAGAGATTATGCAGCTGATGGGCTTTAGTC
CCGACGAATTTTCGGTAATGCCGAGCGACTTTCCCGAGGACTTGGACAAA
AAAGCCTTTGCCAATCCCGCGGACTACGCCCAGAAAAACGCTGAACTCAA
GGCTCTAGATATAGCGACCAAGCTCTTTAGAGAGGTAGACGGAGAGGTAA
ATACGATTCTTGTCATTGGCTCCGATACCATCGTGGACCTTGATGGCACC
ATTTTGGAAAAGCCTGACGATGAGGCGCATGCGCATGCCATGCTTTCCTC
CCTCTCCGGACGACAACACCTGGTGCATTCAGGCGTGGCCGTGTTCAGCT
CCAAGGGCCCCCGAAGCAAAACAAATGGAACTCCGTTGCCTGTTGTGTCG
TTCTGCGAGTCGACACGGGTGACTTTCGCGACCTTGACCTCGGAGGAAAT
ATGGAGTTACGTCCGCTCCGGTGAGCCGATGGATAAGGCGGGTGCCTATG
GAATCCAGGGGCTTGGGGGGCAGATGGTGCGAGGGATCGACGGCTGCTAT
TTTACTGTCATGGGGTTGCCCATGCATAGGCTGAGCGCCGCGCTGGCCCA
AGTCATCATAAAAGGATTGCTGTAGATGCCACTGCTGCCAGAGGATGAGG
CAAGCTCGGCCACGTTGATCCTCGCCTCCAAAAGCCCTCGGCGGCAAGAG
ATTATGCAGCTGATGGGCTTTAGTCCCGACGAATTTTCGGTAATGCCGAG
CGACTTTCCCGAGGACTTGGACAAAAAAGCCTTTGCCAATCCCGCGGACT
ACGCCCAGAAAAACGCTGAACTCAAGGCTCTAGATATAGCGACCAAGCTC
TTTAGAGAGGTAGACGGAGAGGTAAATACGATTCTTGTCATTGGCTCCGA
TACCATCGTGGACCTTGATGGCACCATTTTGGAAAAGCCTGACGATGAGG
CGCATGCGCATGCCATGCTTTCCTCCCTCTCCGGACGACAACACCTGGTG
CATTCAGGCGTGGCCGTGTTCAGCTCCAAGGGCCCCCGAAGCAAAACAAA
TGGAACTCCGTTGCCTGTTGTGTCGTTCTGCGAGTCGACACGGGTGACTT
TCGCGACCTTGACCTCGGAGGAAATATGGAGTTACGTCCGCTCCGGTGAG
CCGATGGATAAGGCGGGTGCCTATGGAATCCAGGGGCTTGGGGGGCAGAT
GGTGCGAGGGATCGACGGCTGCTATTTTACTGTCATGGGGTTGCCCATGC
ATAGGCTGAGCGCCGCGCTGGCCCAAGTCATCATAAAAGGATTGCTGTAG

Synonyms

Publications