jgi.p|Nanoce1779_2|576460, mRNA_178 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|576460
Unique NamemRNA_178
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length442
Alignment locationscaffold_3:447857..450046 +

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Properties
Property NameValue
TranscriptId576546
TrackFilteredModels2
ProteinId576460
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:447857..450046 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576460gene_178Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576460mRNA_178-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_178CDS_178Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_178 ID=mRNA_178|Name=jgi.p|Nanoce1779_2|576460|organism=Nannochloropsis oceanica|type=mRNA|length=442bp
AAAATAAAAACAAAAACAACAGGCGCGTTGCGTGAAGCACGTCCACCCAT
GCTATCGCCCCAACTGTGGAAGAAGATGAGCGCGGGCTTGCCTTTGGTTG
TCTTTTTGGCGGGCGGCTCTGTTTTCTTGGCCAAGTTTGTTCAAGGTCGA
GTGGAAGCCAAGGATAATCGCCTTCAAAGTAAGAGTGAGCGAGAATTCAG
CATCGAGGAGGAGCATAAGCAAATGATGGCTAGATTGAATCCAGAGAGTA
ACTACAAGGTCGTGCGCATCCATCGGCCAGAGGACGACAATGGGTAGCGT
GCTTGCTTGGAAGAGAAAAAGGAAATCATGTTTACAAACCAACGGAAGGC
AGGAACGAGAAATCTCACGACGGCGAATAGTCTTGCATGTAAATTAAATC
AAAGCATAGACCAAAAATGAAAACAAATGAATAAGTGAATCA
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protein sequence of jgi.p|Nanoce1779_2|576460

>mRNA_178-protein ID=mRNA_178-protein|Name=jgi.p|Nanoce1779_2|576460|organism=Nannochloropsis oceanica|type=polypeptide|length=83bp
MLSPQLWKKMSAGLPLVVFLAGGSVFLAKFVQGRVEAKDNRLQSKSEREF
SIEEEHKQMMARLNPESNYKVVRIHRPEDDNG*
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mRNA from alignment at scaffold_3:447857..450046+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_178 ID=mRNA_178|Name=jgi.p|Nanoce1779_2|576460|organism=Nannochloropsis oceanica|type=mRNA|length=2190bp|location=Sequence derived from alignment at scaffold_3:447857..450046+ (Nannochloropsis oceanica)
AAAATAAAAACAAAAACAGACGAGACATACCTGCTCCTTCGCCACATGCT
GCGCGACGTAAAGCAGATGCCCCAACAAAGCCTTATTCCCCTCCGTTGCC
TTGCTCAAACGCGTCAAACCTTGCTTCTCCTTGGGAATTACCAAGAAATG
CACGGGGCCCTGGGGGCTCAAGTCTTTGAAGGCGACGCATAGATCGTCTT
CGTAAATAAAATCGGTGTGGATCTCCCCTTTCGCTATTTTGTCAAAAATA
GTGGGCTGTGTGTGTTGTGTGTTTGTGCCATGGACTGGAATAAGAATAGG
GAAATACGACGTTTATGATTTGACACCTCAAGCCAATAGAAAATGCGAAA
TATAGATGATAAAGGTGCGGGATGAGTTGCGAGAGCACCAGGAGGGGAGA
GAACATATGTCTCTTTTGAGAGTGAAAGCCATCGCCCTGCATAGGCAAAT
CATTTGCTGCAAGACGTACAGTTATCGAAAGAATATAACTACCTTCAAGC
CATATAAGAGATATTTGAGCTCGTTGAACCTACACGCATACCTCACTCAC
GTATTCCCTCTCTCTCCTTCCCTGAGACCACGGGGTTTAATATAAAGCTG
TGACTTACCGAGCCAGCGTCTGCCGCTTCCTCCATCTGCCTGGCTGCGGC
CTTGCGAGCTTCTCCGACTTCATCAACCATCTGTTTATATTTTCCGTCAC
TGGAAAGAAAACGCGTAATGATGATGCTGCTGGCAGCCTTGGTAATGAAG
GCCCCTGCTTCGAGGGGTAGTGTTGAGGGGCGGCGGAACAAAAAATGCTG
CGGGAGACGGGCGAGACGATGGCTCATTCAAGGATTCAGACCCTGTGCAA
CCACAACTTAAGCGTCCTCCAAATGAAGAAGACGATGTTGACAGAGGAGT
GCCTGCACGTGTGCGGCGTGGTGTGAGTCTTTTGTGAGGCATGCGACGTG
ATTCGTGGCGGGTGGTGGAGAGCACTAGATCAACAATCTATGCGAGGCCC
TTGACTTCGTCTAGAAGTCACTGACAGCCTTGATCCACCAATTCTACTCA
TGATGTCAGCATGCTCGCTTGGGCGACTTGGGTCAGGGCGGCCAGGGCTA
CGATGGGGTGAGGAGAGAGCTTGTTTGTGCTGGCTTCGGCGACTTGAGGC
TGGGCTGACCGGACGGCAGCTCGCAAGGCGGGAATGTGATTATCGTCAGC
GTCTATCCTGGAGAATGTAAAGAACTGGAGGACTCTGCCTGTTTTTCTTC
CTCGCAGAGAACGCAGTGAATGATGGGGGGCGTAAAAAGCAGGCTGAATA
AAGCTGAACGGCCTTGGGCAAGATGATTCAACGAGGGCGATGATTGTAGC
GCATTTTGCGTACCATGCACACGCTCCTGCCCACACCCACAAGCTCATGG
GCGAATTACCATGACGAGTTCAAAGAACCTGATTCTGCTGCTGCTTGTGG
TGACGGAGGGCCTGTCTTGGCTTGCTATCGTGAGCGTGGACCGACAGCCA
AGCAACCTCCCAACCCAACACCCTCACTCAAATGACCACCATCACACTCG
CGCACACATCACGTACAGGCGCGTTGCGTGAAGCACGTCCACCCATGCTA
TCGCCCCAACTGTGGAAGAAGATGAGCGCGGGCTTGCCTTTGGTTGTCTT
TTTGGCGGGCGGCTCTGTTTTCTTGGCCAAGGTACGAGTGTCGTTGTAAG
ACCCTCAAGCCCTCTAAATCCTGCCCCTTGCCTTCCCCGCCCCTCTTGGC
TAGTTAATACCGCAGCGTTATTTTGCAAGCCACTTGACATCCTTCGTTTA
GTTCAGCGCACCCATGAAACCGTTGCCTCTAGTTCTTTCCCCTGGTCACA
CCTTCCCTCCATGTCCCCCTTTCTCATCAACAGTTTGTTCAAGGTCGAGT
GGAAGCCAAGGATAATCGCCTTCAAAGTAAGAGTGAGCGAGAATTCAGCA
TCGAGGAGGAGCATAAGCAAATGATGGCTAGATTGAATCCAGAGAGTAAC
TACAAGGTCGTGCGCATCCATCGGCCAGAGGACGACAATGGGTAGCGTGC
TTGCTTGGAAGAGAAAAAGGAAATCATGTTTACAAACCAACGGAAGGCAG
GAACGAGAAATCTCACGACGGCGAATAGTCTTGCATGTAAATTAAATCAA
AGCATAGACCAAAAATGAAAACAAATGAATAAGTGAATCA
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Coding sequence (CDS) from alignment at scaffold_3:447857..450046+

>mRNA_178 ID=mRNA_178|Name=jgi.p|Nanoce1779_2|576460|organism=Nannochloropsis oceanica|type=CDS|length=498bp|location=Sequence derived from alignment at scaffold_3:447857..450046+ (Nannochloropsis oceanica)
ATGCTATCGCCCCAACTGTGGAAGAAGATGAGCGCGGGCTTGCCTTTGGT
TGTCTTTTTGGCGGGCGGCTCTGTTTTCTTGGCCAAGTTTGTTCAAGGTC
GAGTGGAAGCCAAGGATAATCGCCTTCAAAGTAAGAGTGAGCGAGAATTC
AGCATCGAGGAGGAGCATAAGCAAATGATGGCTAGATTGAATCCAGAGAG
TAACTACAAGGTCGTGCGCATCCATCGGCCAGAGGACGACAATGGGTAGA
TGCTATCGCCCCAACTGTGGAAGAAGATGAGCGCGGGCTTGCCTTTGGTT
GTCTTTTTGGCGGGCGGCTCTGTTTTCTTGGCCAAGTTTGTTCAAGGTCG
AGTGGAAGCCAAGGATAATCGCCTTCAAAGTAAGAGTGAGCGAGAATTCA
GCATCGAGGAGGAGCATAAGCAAATGATGGCTAGATTGAATCCAGAGAGT
AACTACAAGGTCGTGCGCATCCATCGGCCAGAGGACGACAATGGGTAG
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Synonyms
Publications