jgi.p|Nanoce1779_2|667638, mRNA_1778 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|667638
Unique NamemRNA_1778
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1373
Alignment locationscaffold_1:1495839..1497211 -

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Properties
Property NameValue
TranscriptId667724
TrackFilteredModels2
ProteinId667638
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:1495839..1497211 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|667638gene_1778Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1778CDS_1778Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|667638mRNA_1778-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1778 ID=mRNA_1778|Name=jgi.p|Nanoce1779_2|667638|organism=Nannochloropsis oceanica|type=mRNA|length=1373bp
CAGCCACAGACAGCGTGTGCCACTTGCCCGGCCATCACTGCCCTTCGCAG
CATATCCCGCCCATGGGTGGCAACGATGTGCCCAGCGGCACTATCTCGAG
CCATGCTGAGCCCTATCCTGCTGTCCCATGTGGCTGCTTGGCGTGGGCAT
GTGCTTGTATTTCCTCTCCTCCCTCCGTCCCCACGACCCCCATCCCAACG
GCCATGGCATCCAAGCCCCCAGGCCCTTCCGGCGACGCCCATTCTCCTTC
CTTCCTCGTCAAGGCTTCCTCGCCCTATATCGCCACTCCTCCCGCCATCG
GCATCGGTATAGGCTGGGGGCGAAGCCTGTGCTATGACTCGGAAGATGAC
GAGGACATTTCAGAGATGTTGCTGGAGGAGGAGGGTGGGGACTTTCCTCG
AGCACGCAAGCGGCACAACGCGACTGTCCGTTGGCGCCACCACCACCGTG
TCGACAACATTTTCGACACGGGAGAGACACCTACTCCAGCGGCATTTGCA
CAAATCCTCCGCATTTGGCCTCGTTGGTTTCAGGGGCGGACGCGGGATGG
TGATGTGGTGATGTACGAGGAGCTAGGAAAGCTGCGTGGGTCAAGCCTGA
GGGAGGCTCGCTTGAATCCGGGAGCATGGTCACGGCACCTGGCCTTAATT
TGCGAGTATGTGGTGCGGTGCATGGACCAGTCGGACGAGGATCTCTCCGA
TGGCTATGATCACTATCTTTATGACGAGATCAGTAGCCTCAGGAGGGGGG
GGGGCAGCACGAAAGGAATGGAGGGCATTGAAGAGCTGAAAGAAAAAGAA
GACACGCAAACAAAACTGAAGAAGAACCCGAGGCCGGGCCGCAACAATTG
GGACGACGAATATGCCCAAGGCCCCCCCCGTCCACGCATCACGATCGTCT
TATCCCTTGCGGGCGTGACCTCCGCTGGCTTCTTCGCGGACTTTGCCGTT
CGCAAGGCCGTTCGTATTTGGAGCCACATTTTGCAGGCGCATTACCCAGG
CCTCGTTCATCGCATCCTCCTCGTGAATGTGCCCAGCTTTCTCTCCCCCA
CGGCGCTTGCTTTCCTTCAGCCCTTGCGTCTCTTGCCTAGGCACTGGCGT
AGGAAGATCTGGTTGGTCCTTGAGGATGGTGCTGACGGCGTGGCCACGCC
CTTGGAAGACAGCCATCGAGCCCTCCTCGCCACGGCGGGTCTCTCCCCGA
GCACCTGTGTCTTGCGCGGCATCGAGAGCGTCATAGATTCTTCGTCTTTA
TCTGCGGCTGTCTTCCCGGCCTTCGGGCGTGACTTTGGCGAGAGGGCGCA
TGCGGAGGAGTGGGCACCACTGCTGGGGTTCGTGAATGCTAATTTTCAAC
CAGAAACAGGGAAAGAAGGATAA
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protein sequence of jgi.p|Nanoce1779_2|667638

>mRNA_1778-protein ID=mRNA_1778-protein|Name=jgi.p|Nanoce1779_2|667638|organism=Nannochloropsis oceanica|type=polypeptide|length=437bp
MGGNDVPSGTISSHAEPYPAVPCGCLAWACACISSPPSVPTTPIPTAMAS
KPPGPSGDAHSPSFLVKASSPYIATPPAIGIGIGWGRSLCYDSEDDEDIS
EMLLEEEGGDFPRARKRHNATVRWRHHHRVDNIFDTGETPTPAAFAQILR
IWPRWFQGRTRDGDVVMYEELGKLRGSSLREARLNPGAWSRHLALICEYV
VRCMDQSDEDLSDGYDHYLYDEISSLRRGGGSTKGMEGIEELKEKEDTQT
KLKKNPRPGRNNWDDEYAQGPPRPRITIVLSLAGVTSAGFFADFAVRKAV
RIWSHILQAHYPGLVHRILLVNVPSFLSPTALAFLQPLRLLPRHWRRKIW
LVLEDGADGVATPLEDSHRALLATAGLSPSTCVLRGIESVIDSSSLSAAV
FPAFGRDFGERAHAEEWAPLLGFVNANFQPETGKEG*
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mRNA from alignment at scaffold_1:1495839..1497211-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1778 ID=mRNA_1778|Name=jgi.p|Nanoce1779_2|667638|organism=Nannochloropsis oceanica|type=mRNA|length=1373bp|location=Sequence derived from alignment at scaffold_1:1495839..1497211- (Nannochloropsis oceanica)
CAGCCACAGACAGCGTGTGCCACTTGCCCGGCCATCACTGCCCTTCGCAG
CATATCCCGCCCATGGGTGGCAACGATGTGCCCAGCGGCACTATCTCGAG
CCATGCTGAGCCCTATCCTGCTGTCCCATGTGGCTGCTTGGCGTGGGCAT
GTGCTTGTATTTCCTCTCCTCCCTCCGTCCCCACGACCCCCATCCCAACG
GCCATGGCATCCAAGCCCCCAGGCCCTTCCGGCGACGCCCATTCTCCTTC
CTTCCTCGTCAAGGCTTCCTCGCCCTATATCGCCACTCCTCCCGCCATCG
GCATCGGTATAGGCTGGGGGCGAAGCCTGTGCTATGACTCGGAAGATGAC
GAGGACATTTCAGAGATGTTGCTGGAGGAGGAGGGTGGGGACTTTCCTCG
AGCACGCAAGCGGCACAACGCGACTGTCCGTTGGCGCCACCACCACCGTG
TCGACAACATTTTCGACACGGGAGAGACACCTACTCCAGCGGCATTTGCA
CAAATCCTCCGCATTTGGCCTCGTTGGTTTCAGGGGCGGACGCGGGATGG
TGATGTGGTGATGTACGAGGAGCTAGGAAAGCTGCGTGGGTCAAGCCTGA
GGGAGGCTCGCTTGAATCCGGGAGCATGGTCACGGCACCTGGCCTTAATT
TGCGAGTATGTGGTGCGGTGCATGGACCAGTCGGACGAGGATCTCTCCGA
TGGCTATGATCACTATCTTTATGACGAGATCAGTAGCCTCAGGAGGGGGG
GGGGCAGCACGAAAGGAATGGAGGGCATTGAAGAGCTGAAAGAAAAAGAA
GACACGCAAACAAAACTGAAGAAGAACCCGAGGCCGGGCCGCAACAATTG
GGACGACGAATATGCCCAAGGCCCCCCCCGTCCACGCATCACGATCGTCT
TATCCCTTGCGGGCGTGACCTCCGCTGGCTTCTTCGCGGACTTTGCCGTT
CGCAAGGCCGTTCGTATTTGGAGCCACATTTTGCAGGCGCATTACCCAGG
CCTCGTTCATCGCATCCTCCTCGTGAATGTGCCCAGCTTTCTCTCCCCCA
CGGCGCTTGCTTTCCTTCAGCCCTTGCGTCTCTTGCCTAGGCACTGGCGT
AGGAAGATCTGGTTGGTCCTTGAGGATGGTGCTGACGGCGTGGCCACGCC
CTTGGAAGACAGCCATCGAGCCCTCCTCGCCACGGCGGGTCTCTCCCCGA
GCACCTGTGTCTTGCGCGGCATCGAGAGCGTCATAGATTCTTCGTCTTTA
TCTGCGGCTGTCTTCCCGGCCTTCGGGCGTGACTTTGGCGAGAGGGCGCA
TGCGGAGGAGTGGGCACCACTGCTGGGGTTCGTGAATGCTAATTTTCAAC
CAGAAACAGGGAAAGAAGGATAA
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Coding sequence (CDS) from alignment at scaffold_1:1495839..1497211-

>mRNA_1778 ID=mRNA_1778|Name=jgi.p|Nanoce1779_2|667638|organism=Nannochloropsis oceanica|type=CDS|length=1311bp|location=Sequence derived from alignment at scaffold_1:1495839..1497211- (Nannochloropsis oceanica)
ATGGGTGGCAACGATGTGCCCAGCGGCACTATCTCGAGCCATGCTGAGCC
CTATCCTGCTGTCCCATGTGGCTGCTTGGCGTGGGCATGTGCTTGTATTT
CCTCTCCTCCCTCCGTCCCCACGACCCCCATCCCAACGGCCATGGCATCC
AAGCCCCCAGGCCCTTCCGGCGACGCCCATTCTCCTTCCTTCCTCGTCAA
GGCTTCCTCGCCCTATATCGCCACTCCTCCCGCCATCGGCATCGGTATAG
GCTGGGGGCGAAGCCTGTGCTATGACTCGGAAGATGACGAGGACATTTCA
GAGATGTTGCTGGAGGAGGAGGGTGGGGACTTTCCTCGAGCACGCAAGCG
GCACAACGCGACTGTCCGTTGGCGCCACCACCACCGTGTCGACAACATTT
TCGACACGGGAGAGACACCTACTCCAGCGGCATTTGCACAAATCCTCCGC
ATTTGGCCTCGTTGGTTTCAGGGGCGGACGCGGGATGGTGATGTGGTGAT
GTACGAGGAGCTAGGAAAGCTGCGTGGGTCAAGCCTGAGGGAGGCTCGCT
TGAATCCGGGAGCATGGTCACGGCACCTGGCCTTAATTTGCGAGTATGTG
GTGCGGTGCATGGACCAGTCGGACGAGGATCTCTCCGATGGCTATGATCA
CTATCTTTATGACGAGATCAGTAGCCTCAGGAGGGGGGGGGGCAGCACGA
AAGGAATGGAGGGCATTGAAGAGCTGAAAGAAAAAGAAGACACGCAAACA
AAACTGAAGAAGAACCCGAGGCCGGGCCGCAACAATTGGGACGACGAATA
TGCCCAAGGCCCCCCCCGTCCACGCATCACGATCGTCTTATCCCTTGCGG
GCGTGACCTCCGCTGGCTTCTTCGCGGACTTTGCCGTTCGCAAGGCCGTT
CGTATTTGGAGCCACATTTTGCAGGCGCATTACCCAGGCCTCGTTCATCG
CATCCTCCTCGTGAATGTGCCCAGCTTTCTCTCCCCCACGGCGCTTGCTT
TCCTTCAGCCCTTGCGTCTCTTGCCTAGGCACTGGCGTAGGAAGATCTGG
TTGGTCCTTGAGGATGGTGCTGACGGCGTGGCCACGCCCTTGGAAGACAG
CCATCGAGCCCTCCTCGCCACGGCGGGTCTCTCCCCGAGCACCTGTGTCT
TGCGCGGCATCGAGAGCGTCATAGATTCTTCGTCTTTATCTGCGGCTGTC
TTCCCGGCCTTCGGGCGTGACTTTGGCGAGAGGGCGCATGCGGAGGAGTG
GGCACCACTGCTGGGGTTCGTGAATGCTAATTTTCAACCAGAAACAGGGA
AAGAAGGATAA
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Synonyms
Publications