jgi.p|Nanoce1779_2|667637, mRNA_1777 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|667637
Unique Name	mRNA_1777
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2126
Alignment location	scaffold_1:1493343..1495468 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	667723
Track	FilteredModels2
ProteinId	667637

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:1493343..1495468 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|667637	gene_1777	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|667637	mRNA_1777-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1777	CDS_1777	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:1493343..1495468+
coding sequence from alignment at scaffold_1:1493343..1495468+

mRNA sequence

>mRNA_1777 ID=mRNA_1777|Name=jgi.p|Nanoce1779_2|667637|organism=Nannochloropsis oceanica|type=mRNA|length=2126bp
ACTGATTGACCCCTGTCTGTGCCTTGCGGGGAGGGTGGGGATGTGATAAG
CAGGCTTTTTCCGCGTGATGAGGCGCTCCTTTATCGATCTCGACCAGGTC
AGGTCACTTACTCGTTGCCGCCGCTCGCCAAATAAACGAGACTCGTTTTG
ATCTCTAAGCACGATACCCACCCCATCCATGGACACAGGCATGGAGGAGG
AGGGAAACGAGCTCGAGGAGGACGTCGAGCTGACGGGAGCAGCAGCCAGG
GGTAAAGGACGATTGGGACTAAGACGCCAACCAGCAAATTCCATTGAGGC
TCTCCACAGCAAAAGCAGCAGCAGTAGCAGCAGCGGTGGCAGCAAGCGCA
GCAGCATCGCAGCGGGAGCAGCAGCAGCAGCAGGAGACAGTGTATTTGCG
GATCACTCGCACTCGCCCCACCTGTTCTTCCTGTCGTCGCCCGAGGACAA
TAAAAGAGGGCGGCGCTTGAGACGATTGAGGCGGCGACCGGAGCCCATGT
CACCCCCCCCGTCCACGGCCATCATCTCCTTGCTTAACAACGACGACAAC
ATAGATGATCATGACAAGAAGGATGCGGAGGAATGGACAGAAGGCGAGTC
AGCATCGGCAGCAGTTGGAGCGGCGGCAGCCGTGGGCACCCAAAGAAGTC
CGATTGATCTCATTTCTCCCTCAAGCCGCCGAAGCAGCAGCAGCAGCCTC
CTTGGCAGAACAAGCGAGACGCCTCCTATTCCTGCAATTGTCACAGAAAG
TGGGGTTGGTATTAGCATGACAAAGGCGGCGGCGAAGATGACGCTGGAGG
AAGAGGAGGAGGAAGAGGAGGAGTGGGGAGCGGACTGGGAGGAGGGAGGA
GCAAGGGGGTTGCTTTCGTACGACGTGGACAGTGTGTTGGATAACGACCT
GGAAGAAAAAGCAGAGTCAAAAGATGAGGACGAGGAGGAGGAGGAGGAGG
AAGAGGAGGAGGAGGAGATAGAGGACGAGTACGCCTTCATAATTAACGAT
GGGGATGGCGATGCATTGCTGCAAACTGACAGCTCCTCCTCCTCCCCTTC
ATCGCTGCCCCAGCAATTTCTGTCCCTCCCTCCTGATTCCTCCTCTCAAG
CCTTCATCCACCACCGCGATGTGGACAACAGTGACGAAGAAGACGACGGG
GAGAATGACGGCTTTGCCTCCCTCCCCGCTAGTGAGCTCCGCGCCCGTCT
TCGCTCCCTCGGCCTTCCCGCCACAGGCCGCACTAAAAGCCTTCTCGCCG
CCCGCCTCCGCTCGAGCTTGCGCGCGCAACGCTTGGCTGCTTTTCCCGTG
GGTAGCACGGAAAGATACAGCGATAGGCGCGGTAAAGTTAACAAGGCTGA
TTTGCCCAAGGGGGCGAATGGACGAGCACTCTGTCGGTTGTGTCAGAGAG
AGTGCCCCAAGAAGGTGAACACGTTCTGCTCGCCGGCCTGCGTGCATGAG
CATCGGCTGCGGACGAGCGGATCGTATGTGAGGAAGTGTCTGTTGGTCAG
GGACCGGGGAAAGTGCGCCTTGTGTGCGCTGGACGTGCATCAAATGTACT
TGAAAGTGCGGCGGTTGATCTTGGCGCAAGGGTGGAGAGGGAGGGGAAAG
GGGGCGAAGGGCAAGGAAGGAGGGTGGAAAGACAGTGTCTTGGGAGGGAT
GCAGGCGGTGGTGGATGAGGTGGTGGAGGGGACGGTCCTAGAAGGCAAGG
TGAAGGTACGAGGGTTGAATACTAATGGCAGCAGTAGCAGCAGCAAGAAG
GCCGTAGGAGGGAGTGGGAAGCAACAGCGTCCTCGGCGACCGTTCAACAG
CGGGTTGTTCTGGCATGCTGATCACATTGTTCCAGTGGTGGAGGGAGGGG
GGTTGCAGGGCCTGGAGAACTTTCGGATCCTATGCGTGGCATGTCATCAG
ACAGCCACGGCCAAGCTGAGGGAACGGCGTGCACAGGCCAAGCGTTCGGT
GAAGCAGCATGAAGGGAAGGAGGGAAAGGAGGGAAGAGAAGGAGAGGATG
GAGAAGGGATTAAGGAAGAGAGCGGCGTGGCGGCAGTGGTGGATGCAGAT
GAGGTGTATGGAATGGAGGTTGATGTGTGATAAAATGTTGTGAATATTAA
AATGAGTAGTAGATGGTGGGTGTCAA

protein sequence of jgi.p|Nanoce1779_2|667637

>mRNA_1777-protein ID=mRNA_1777-protein|Name=jgi.p|Nanoce1779_2|667637|organism=Nannochloropsis oceanica|type=polypeptide|length=634bp
MDTGMEEEGNELEEDVELTGAAARGKGRLGLRRQPANSIEALHSKSSSSS
SSGGSKRSSIAAGAAAAAGDSVFADHSHSPHLFFLSSPEDNKRGRRLRRL
RRRPEPMSPPPSTAIISLLNNDDNIDDHDKKDAEEWTEGESASAAVGAAA
AVGTQRSPIDLISPSSRRSSSSSLLGRTSETPPIPAIVTESGVGISMTKA
AAKMTLEEEEEEEEEWGADWEEGGARGLLSYDVDSVLDNDLEEKAESKDE
DEEEEEEEEEEEEIEDEYAFIINDGDGDALLQTDSSSSSPSSLPQQFLSL
PPDSSSQAFIHHRDVDNSDEEDDGENDGFASLPASELRARLRSLGLPATG
RTKSLLAARLRSSLRAQRLAAFPVGSTERYSDRRGKVNKADLPKGANGRA
LCRLCQRECPKKVNTFCSPACVHEHRLRTSGSYVRKCLLVRDRGKCALCA
LDVHQMYLKVRRLILAQGWRGRGKGAKGKEGGWKDSVLGGMQAVVDEVVE
GTVLEGKVKVRGLNTNGSSSSSKKAVGGSGKQQRPRRPFNSGLFWHADHI
VPVVEGGGLQGLENFRILCVACHQTATAKLRERRAQAKRSVKQHEGKEGK
EGREGEDGEGIKEESGVAAVVDADEVYGMEVDV*

mRNA from alignment at scaffold_1:1493343..1495468+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1777 ID=mRNA_1777|Name=jgi.p|Nanoce1779_2|667637|organism=Nannochloropsis oceanica|type=mRNA|length=2126bp|location=Sequence derived from alignment at scaffold_1:1493343..1495468+ (Nannochloropsis oceanica)
ACTGATTGACCCCTGTCTGTGCCTTGCGGGGAGGGTGGGGATGTGATAAG
CAGGCTTTTTCCGCGTGATGAGGCGCTCCTTTATCGATCTCGACCAGGTC
AGGTCACTTACTCGTTGCCGCCGCTCGCCAAATAAACGAGACTCGTTTTG
ATCTCTAAGCACGATACCCACCCCATCCATGGACACAGGCATGGAGGAGG
AGGGAAACGAGCTCGAGGAGGACGTCGAGCTGACGGGAGCAGCAGCCAGG
GGTAAAGGACGATTGGGACTAAGACGCCAACCAGCAAATTCCATTGAGGC
TCTCCACAGCAAAAGCAGCAGCAGTAGCAGCAGCGGTGGCAGCAAGCGCA
GCAGCATCGCAGCGGGAGCAGCAGCAGCAGCAGGAGACAGTGTATTTGCG
GATCACTCGCACTCGCCCCACCTGTTCTTCCTGTCGTCGCCCGAGGACAA
TAAAAGAGGGCGGCGCTTGAGACGATTGAGGCGGCGACCGGAGCCCATGT
CACCCCCCCCGTCCACGGCCATCATCTCCTTGCTTAACAACGACGACAAC
ATAGATGATCATGACAAGAAGGATGCGGAGGAATGGACAGAAGGCGAGTC
AGCATCGGCAGCAGTTGGAGCGGCGGCAGCCGTGGGCACCCAAAGAAGTC
CGATTGATCTCATTTCTCCCTCAAGCCGCCGAAGCAGCAGCAGCAGCCTC
CTTGGCAGAACAAGCGAGACGCCTCCTATTCCTGCAATTGTCACAGAAAG
TGGGGTTGGTATTAGCATGACAAAGGCGGCGGCGAAGATGACGCTGGAGG
AAGAGGAGGAGGAAGAGGAGGAGTGGGGAGCGGACTGGGAGGAGGGAGGA
GCAAGGGGGTTGCTTTCGTACGACGTGGACAGTGTGTTGGATAACGACCT
GGAAGAAAAAGCAGAGTCAAAAGATGAGGACGAGGAGGAGGAGGAGGAGG
AAGAGGAGGAGGAGGAGATAGAGGACGAGTACGCCTTCATAATTAACGAT
GGGGATGGCGATGCATTGCTGCAAACTGACAGCTCCTCCTCCTCCCCTTC
ATCGCTGCCCCAGCAATTTCTGTCCCTCCCTCCTGATTCCTCCTCTCAAG
CCTTCATCCACCACCGCGATGTGGACAACAGTGACGAAGAAGACGACGGG
GAGAATGACGGCTTTGCCTCCCTCCCCGCTAGTGAGCTCCGCGCCCGTCT
TCGCTCCCTCGGCCTTCCCGCCACAGGCCGCACTAAAAGCCTTCTCGCCG
CCCGCCTCCGCTCGAGCTTGCGCGCGCAACGCTTGGCTGCTTTTCCCGTG
GGTAGCACGGAAAGATACAGCGATAGGCGCGGTAAAGTTAACAAGGCTGA
TTTGCCCAAGGGGGCGAATGGACGAGCACTCTGTCGGTTGTGTCAGAGAG
AGTGCCCCAAGAAGGTGAACACGTTCTGCTCGCCGGCCTGCGTGCATGAG
CATCGGCTGCGGACGAGCGGATCGTATGTGAGGAAGTGTCTGTTGGTCAG
GGACCGGGGAAAGTGCGCCTTGTGTGCGCTGGACGTGCATCAAATGTACT
TGAAAGTGCGGCGGTTGATCTTGGCGCAAGGGTGGAGAGGGAGGGGAAAG
GGGGCGAAGGGCAAGGAAGGAGGGTGGAAAGACAGTGTCTTGGGAGGGAT
GCAGGCGGTGGTGGATGAGGTGGTGGAGGGGACGGTCCTAGAAGGCAAGG
TGAAGGTACGAGGGTTGAATACTAATGGCAGCAGTAGCAGCAGCAAGAAG
GCCGTAGGAGGGAGTGGGAAGCAACAGCGTCCTCGGCGACCGTTCAACAG
CGGGTTGTTCTGGCATGCTGATCACATTGTTCCAGTGGTGGAGGGAGGGG
GGTTGCAGGGCCTGGAGAACTTTCGGATCCTATGCGTGGCATGTCATCAG
ACAGCCACGGCCAAGCTGAGGGAACGGCGTGCACAGGCCAAGCGTTCGGT
GAAGCAGCATGAAGGGAAGGAGGGAAAGGAGGGAAGAGAAGGAGAGGATG
GAGAAGGGATTAAGGAAGAGAGCGGCGTGGCGGCAGTGGTGGATGCAGAT
GAGGTGTATGGAATGGAGGTTGATGTGTGATAAAATGTTGTGAATATTAA
AATGAGTAGTAGATGGTGGGTGTCAA

Coding sequence (CDS) from alignment at scaffold_1:1493343..1495468+

>mRNA_1777 ID=mRNA_1777|Name=jgi.p|Nanoce1779_2|667637|organism=Nannochloropsis oceanica|type=CDS|length=1902bp|location=Sequence derived from alignment at scaffold_1:1493343..1495468+ (Nannochloropsis oceanica)
ATGGACACAGGCATGGAGGAGGAGGGAAACGAGCTCGAGGAGGACGTCGA
GCTGACGGGAGCAGCAGCCAGGGGTAAAGGACGATTGGGACTAAGACGCC
AACCAGCAAATTCCATTGAGGCTCTCCACAGCAAAAGCAGCAGCAGTAGC
AGCAGCGGTGGCAGCAAGCGCAGCAGCATCGCAGCGGGAGCAGCAGCAGC
AGCAGGAGACAGTGTATTTGCGGATCACTCGCACTCGCCCCACCTGTTCT
TCCTGTCGTCGCCCGAGGACAATAAAAGAGGGCGGCGCTTGAGACGATTG
AGGCGGCGACCGGAGCCCATGTCACCCCCCCCGTCCACGGCCATCATCTC
CTTGCTTAACAACGACGACAACATAGATGATCATGACAAGAAGGATGCGG
AGGAATGGACAGAAGGCGAGTCAGCATCGGCAGCAGTTGGAGCGGCGGCA
GCCGTGGGCACCCAAAGAAGTCCGATTGATCTCATTTCTCCCTCAAGCCG
CCGAAGCAGCAGCAGCAGCCTCCTTGGCAGAACAAGCGAGACGCCTCCTA
TTCCTGCAATTGTCACAGAAAGTGGGGTTGGTATTAGCATGACAAAGGCG
GCGGCGAAGATGACGCTGGAGGAAGAGGAGGAGGAAGAGGAGGAGTGGGG
AGCGGACTGGGAGGAGGGAGGAGCAAGGGGGTTGCTTTCGTACGACGTGG
ACAGTGTGTTGGATAACGACCTGGAAGAAAAAGCAGAGTCAAAAGATGAG
GACGAGGAGGAGGAGGAGGAGGAAGAGGAGGAGGAGGAGATAGAGGACGA
GTACGCCTTCATAATTAACGATGGGGATGGCGATGCATTGCTGCAAACTG
ACAGCTCCTCCTCCTCCCCTTCATCGCTGCCCCAGCAATTTCTGTCCCTC
CCTCCTGATTCCTCCTCTCAAGCCTTCATCCACCACCGCGATGTGGACAA
CAGTGACGAAGAAGACGACGGGGAGAATGACGGCTTTGCCTCCCTCCCCG
CTAGTGAGCTCCGCGCCCGTCTTCGCTCCCTCGGCCTTCCCGCCACAGGC
CGCACTAAAAGCCTTCTCGCCGCCCGCCTCCGCTCGAGCTTGCGCGCGCA
ACGCTTGGCTGCTTTTCCCGTGGGTAGCACGGAAAGATACAGCGATAGGC
GCGGTAAAGTTAACAAGGCTGATTTGCCCAAGGGGGCGAATGGACGAGCA
CTCTGTCGGTTGTGTCAGAGAGAGTGCCCCAAGAAGGTGAACACGTTCTG
CTCGCCGGCCTGCGTGCATGAGCATCGGCTGCGGACGAGCGGATCGTATG
TGAGGAAGTGTCTGTTGGTCAGGGACCGGGGAAAGTGCGCCTTGTGTGCG
CTGGACGTGCATCAAATGTACTTGAAAGTGCGGCGGTTGATCTTGGCGCA
AGGGTGGAGAGGGAGGGGAAAGGGGGCGAAGGGCAAGGAAGGAGGGTGGA
AAGACAGTGTCTTGGGAGGGATGCAGGCGGTGGTGGATGAGGTGGTGGAG
GGGACGGTCCTAGAAGGCAAGGTGAAGGTACGAGGGTTGAATACTAATGG
CAGCAGTAGCAGCAGCAAGAAGGCCGTAGGAGGGAGTGGGAAGCAACAGC
GTCCTCGGCGACCGTTCAACAGCGGGTTGTTCTGGCATGCTGATCACATT
GTTCCAGTGGTGGAGGGAGGGGGGTTGCAGGGCCTGGAGAACTTTCGGAT
CCTATGCGTGGCATGTCATCAGACAGCCACGGCCAAGCTGAGGGAACGGC
GTGCACAGGCCAAGCGTTCGGTGAAGCAGCATGAAGGGAAGGAGGGAAAG
GAGGGAAGAGAAGGAGAGGATGGAGAAGGGATTAAGGAAGAGAGCGGCGT
GGCGGCAGTGGTGGATGCAGATGAGGTGTATGGAATGGAGGTTGATGTGT
GA

Synonyms

Publications