jgi.p|Nanoce1779_2|667636, mRNA_1776 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|667636
Unique NamemRNA_1776
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1257
Alignment locationscaffold_1:1491695..1493366 -

Link to JBrowse

Properties
Property NameValue
TranscriptId667722
TrackFilteredModels2
ProteinId667636
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:1491695..1493366 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|667636gene_1776Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|667636mRNA_1776-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1776CDS_1776Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1776 ID=mRNA_1776|Name=jgi.p|Nanoce1779_2|667636|organism=Nannochloropsis oceanica|type=mRNA|length=1257bp
AGGCACAGACAGGGGTCAATCAGTTCAAGTCACGCAATGGACGTGATCCA
CTCTGCCATTTCCCGCGGGGATCTCATGAAAGTCAAAAGTCTATGCGAGC
ACGAGCCCGACCTCCTGTACCTGGACGACTGGCAAGCCCGCACACCTTTG
GTTCTAAGCGTCTTGGCCAACTCCCTTCCCCTTGTGAAGTTCTTTGCCGA
AGAGGTGGAGGAAGCTGCCCGGGCAATGGTGGATGAGCCCACAGCTCCTG
ATAATAACACGGCGCTTTTTTATGCGTGCCGGGATGGTCGCGTGGAGCTG
GCATCCTACTTGCTGGCGCGGGGCGCAGACCCTTGGCAGCGAAATCGGTA
CGGTACTACTCTCTTTATGATTACGGCGGCCTCGGCTCCTAGTGGAGGTG
GTGAGGGGGGAGGCCAATGTGGTGGGGCAAGTGCGACGGGGGTGCTGCTG
TGTCTTCTGGAAGTCATCAATCGTAGCGGGGAGGGTGGCGGGAGGGGACG
CTTGCACGAACTTCTGAATGCGCAGAATCGCAATGGCAAAACGGCGCTGG
CCTTGGCCTGTGAGCGCGGTGCATCAGACGTGGTGGTCGTTCTGGTTGCC
GCAGGGGCAAACCCCTTCTTGTTCCCTGCTGCTGTCTGTGAGGAGGAAGG
GAAGAAGAAAGAGGAGGAGCAGGGGGAGGCGTGGGAGTGTGTCTACGAAG
CTCGGCGGGCACCGGCGCGCATATCGTTTTTAGAAAAAATTCGTTGCCTA
GCAGACGCCTCTCATGCCCTGGAGAAGTTGCAGGAGGCGGAAATGACCTC
AGGCGAGGGCATGAGAACGAGTGACGGCGAGGGGAAGGAGGAGCCTGAAG
AGCATCAGCAACCTCAATGGCAGGAAGGACAAAAAGCGCAACAGAAACGA
ACAGTCAAATGCCTGGCTACGTTCCCTTTGGCTCTCCAAGGCCGAGTGGC
ACAGGAGGAGGAGGTTCCACGCGTGGTGCTGGCCAGCAAGGGCGACGAGA
AGTTGTTGCATGTGATCCGGCATGTCTTGATCAAGGGAGGGCTGAAACCG
GAATTGTTTGTAGAGCTAATAGAAGGAATGCTAGTGCCTACCTGGCATTT
TGAACACATTGGAGAGGGAGCGGGGATGCAGGACGGCGGGGATGACCCGG
CGGCGCATGGCGAAAGAAAACATATTTGGTTTGTGACAAATGATGCGCAG
CTTAAGCTTTTGGCTTTACTTGAAACGCTGTTGCTTCTCGAAGAAGGCTT
GGGGTAG
back to top

protein sequence of jgi.p|Nanoce1779_2|667636

>mRNA_1776-protein ID=mRNA_1776-protein|Name=jgi.p|Nanoce1779_2|667636|organism=Nannochloropsis oceanica|type=polypeptide|length=407bp
MDVIHSAISRGDLMKVKSLCEHEPDLLYLDDWQARTPLVLSVLANSLPLV
KFFAEEVEEAARAMVDEPTAPDNNTALFYACRDGRVELASYLLARGADPW
QRNRYGTTLFMITAASAPSGGGEGGGQCGGASATGVLLCLLEVINRSGEG
GGRGRLHELLNAQNRNGKTALALACERGASDVVVVLVAAGANPFLFPAAV
CEEEGKKKEEEQGEAWECVYEARRAPARISFLEKIRCLADASHALEKLQE
AEMTSGEGMRTSDGEGKEEPEEHQQPQWQEGQKAQQKRTVKCLATFPLAL
QGRVAQEEEVPRVVLASKGDEKLLHVIRHVLIKGGLKPELFVELIEGMLV
PTWHFEHIGEGAGMQDGGDDPAAHGERKHIWFVTNDAQLKLLALLETLLL
LEEGLG*
back to top

mRNA from alignment at scaffold_1:1491695..1493366-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1776 ID=mRNA_1776|Name=jgi.p|Nanoce1779_2|667636|organism=Nannochloropsis oceanica|type=mRNA|length=1672bp|location=Sequence derived from alignment at scaffold_1:1491695..1493366- (Nannochloropsis oceanica)
AGGCACAGACAGGGGTCAATCAGTTCAAGTCACGCAATGGACGTGATCCA
CTCTGCCATTTCCCGCGGGGATCTCATGAAAGTCAAAAGTCTATGCGAGC
ACGAGCCCGACCTCCTGTACCTGGACGACTGGCAAGCCCGCACACCTTTG
GTTCTAAGCGTCTTGGCCAACTCCCTTCCCCTTGTGAAGTTCTTTGCCGA
AGAGGTGGAGGAAGCTGCCCGGGCAATGGTGGATGAGCCCACAGCTCCTG
ATAATAACACGGCGCTTTTTTATGCGTGCCGGGATGGTCGCGTGGAGCTG
GCATCCTACTTGCTGGCGCGGGGCGCAGACCCTTGGCAGCGAAATCGGTA
CGGTACTACTCTCTTTATGATTACGGCGGCCTCGGCTCCTAGTGGAGGTG
GTGAGGGGGGAGGCCAATGTGGTGGGGCAAGTGCGACGGGGGTGCTGCTG
TGTCTTCTGGAAGTCATCAATCGTAGCGGGGAGGGTGGCGGGAGGGGACG
CTTGCACGAACTTCTGAATGCGCAGAATCGCAATGGCAAAACGGCGCTGG
CCTTGGCCTGTGAGCGCGGTGCATCAGACGTGGTGGTCGTTCTGGTTGCC
GCAGGGGCAAACCCCTTCTTGTTCCCTGCTGCTGTCTGTGAGGAGGAAGG
GAAGAAGAAAGAGGAGGAGCAGGGGGAGGCGTGGGAGTGTGTCTACGAAG
CTCGGCGGGCACCGGCGCGCATATCGTTTTTAGAAAAAATTCGTTGCCTA
GCAGACGCCTCTCATGCCCTGGAGAAGTTGCAGGAGGCGGAAATGACCTC
AGGCGAGGGCATGAGAACGAGTGACGGCGAGGGGAAGGAGGAGCCTGAAG
AGCATCAGCAACCTCAATGGCAGGAAGGACAAAAAGCGCAACAGAAACGA
ACAGTCAAATGCCTGGCTACGTTCCCTTTGGCTCTCCAAGGCCGAGTGGC
ACAGGAGGAGGAGGTTCCACGCGTGGTGCTGGCCAGCAAGGGCGACGAGA
AGTTGTTGCATGTGATCCGGCATGTCTTGATCAAGGGAGGGCTGAAACCG
GAATTGTTTGTAGAGCTAATAGAAGGAATGCTAGTGCCTACCTGGCATTT
TGAACACATGTAAAGAAAGAAAGACGCAATAAAGTGCCACCGTCCTTTCG
CTCTCTCCCATCTCTTCCTCCCCTTCCTATCTCCCCTCCTCACCTGGCAC
ACTCGTTGTAAATAAATCAATATCTCAAAAATGCAAATACTGCTGTGATA
ATAGCCCGCTTCGCTTATTCGTCCAAGCGTGATTGTTACACCGCGCTTTG
CGCTTTTACTTTGGTCTTTCTTTGTTTCTCCTGTCCGCTCTACTTCTTCT
AATAAACTCTCATTACTTAGCGCAAGGCAGCCTGCTTCGGCTTGAGAATG
CGCCGCTCGATAAAGACTGTCCCAACATACCCCAACAGAAATCCTAATGT
GAGATTTACCCAGGGGTACTCCTCCATCCAGGACTTGCTACGCCCACCTC
CCGTGCTCCCGCCACCACCATAAGTGGAGAGGGAGCGGGGATGCAGGACG
GCGGGGATGACCCGGCGGCGCATGGCGAAAGAAAACATATTTGGTTTGTG
ACAAATGATGCGCAGCTTAAGCTTTTGGCTTTACTTGAAACGCTGTTGCT
TCTCGAAGAAGGCTTGGGGTAG
back to top

Coding sequence (CDS) from alignment at scaffold_1:1491695..1493366-

>mRNA_1776 ID=mRNA_1776|Name=jgi.p|Nanoce1779_2|667636|organism=Nannochloropsis oceanica|type=CDS|length=2442bp|location=Sequence derived from alignment at scaffold_1:1491695..1493366- (Nannochloropsis oceanica)
TGGAGAGGGAGCGGGGATGCAGGACGGCGGGGATGACCCGGCGGCGCATG
GCGAAAGAAAACATATTTGGTTTGTGACAAATGATGCGCAGCTTAAGCTT
TTGGCTTTACTTGAAACGCTGTTGCTTCTCGAAGAAGGCTTGGGGTAGAT
GGACGTGATCCACTCTGCCATTTCCCGCGGGGATCTCATGAAAGTCAAAA
GTCTATGCGAGCACGAGCCCGACCTCCTGTACCTGGACGACTGGCAAGCC
CGCACACCTTTGGTTCTAAGCGTCTTGGCCAACTCCCTTCCCCTTGTGAA
GTTCTTTGCCGAAGAGGTGGAGGAAGCTGCCCGGGCAATGGTGGATGAGC
CCACAGCTCCTGATAATAACACGGCGCTTTTTTATGCGTGCCGGGATGGT
CGCGTGGAGCTGGCATCCTACTTGCTGGCGCGGGGCGCAGACCCTTGGCA
GCGAAATCGGTACGGTACTACTCTCTTTATGATTACGGCGGCCTCGGCTC
CTAGTGGAGGTGGTGAGGGGGGAGGCCAATGTGGTGGGGCAAGTGCGACG
GGGGTGCTGCTGTGTCTTCTGGAAGTCATCAATCGTAGCGGGGAGGGTGG
CGGGAGGGGACGCTTGCACGAACTTCTGAATGCGCAGAATCGCAATGGCA
AAACGGCGCTGGCCTTGGCCTGTGAGCGCGGTGCATCAGACGTGGTGGTC
GTTCTGGTTGCCGCAGGGGCAAACCCCTTCTTGTTCCCTGCTGCTGTCTG
TGAGGAGGAAGGGAAGAAGAAAGAGGAGGAGCAGGGGGAGGCGTGGGAGT
GTGTCTACGAAGCTCGGCGGGCACCGGCGCGCATATCGTTTTTAGAAAAA
ATTCGTTGCCTAGCAGACGCCTCTCATGCCCTGGAGAAGTTGCAGGAGGC
GGAAATGACCTCAGGCGAGGGCATGAGAACGAGTGACGGCGAGGGGAAGG
AGGAGCCTGAAGAGCATCAGCAACCTCAATGGCAGGAAGGACAAAAAGCG
CAACAGAAACGAACAGTCAAATGCCTGGCTACGTTCCCTTTGGCTCTCCA
AGGCCGAGTGGCACAGGAGGAGGAGGTTCCACGCGTGGTGCTGGCCAGCA
AGGGCGACGAGAAGTTGTTGCATGTGATCCGGCATGTCTTGATCAAGGGA
GGGCTGAAACCGGAATTGTTTGTAGAGCTAATAGAAGGAATGCTAGTGCC
TACCTGGCATTTTGAACACATTGGAGAGGGAGCGGGGATGCAGGACGGCG
GGGATGACCCGGCGGCGCATGGCGAAAGAAAACATATTTGGTTTGTGACA
AATGATGCGCAGCTTAAGCTTTTGGCTTTACTTGAAACGCTGTTGCTTCT
CGAAGAAGGCTTGGGGTAGATGGACGTGATCCACTCTGCCATTTCCCGCG
GGGATCTCATGAAAGTCAAAAGTCTATGCGAGCACGAGCCCGACCTCCTG
TACCTGGACGACTGGCAAGCCCGCACACCTTTGGTTCTAAGCGTCTTGGC
CAACTCCCTTCCCCTTGTGAAGTTCTTTGCCGAAGAGGTGGAGGAAGCTG
CCCGGGCAATGGTGGATGAGCCCACAGCTCCTGATAATAACACGGCGCTT
TTTTATGCGTGCCGGGATGGTCGCGTGGAGCTGGCATCCTACTTGCTGGC
GCGGGGCGCAGACCCTTGGCAGCGAAATCGGTACGGTACTACTCTCTTTA
TGATTACGGCGGCCTCGGCTCCTAGTGGAGGTGGTGAGGGGGGAGGCCAA
TGTGGTGGGGCAAGTGCGACGGGGGTGCTGCTGTGTCTTCTGGAAGTCAT
CAATCGTAGCGGGGAGGGTGGCGGGAGGGGACGCTTGCACGAACTTCTGA
ATGCGCAGAATCGCAATGGCAAAACGGCGCTGGCCTTGGCCTGTGAGCGC
GGTGCATCAGACGTGGTGGTCGTTCTGGTTGCCGCAGGGGCAAACCCCTT
CTTGTTCCCTGCTGCTGTCTGTGAGGAGGAAGGGAAGAAGAAAGAGGAGG
AGCAGGGGGAGGCGTGGGAGTGTGTCTACGAAGCTCGGCGGGCACCGGCG
CGCATATCGTTTTTAGAAAAAATTCGTTGCCTAGCAGACGCCTCTCATGC
CCTGGAGAAGTTGCAGGAGGCGGAAATGACCTCAGGCGAGGGCATGAGAA
CGAGTGACGGCGAGGGGAAGGAGGAGCCTGAAGAGCATCAGCAACCTCAA
TGGCAGGAAGGACAAAAAGCGCAACAGAAACGAACAGTCAAATGCCTGGC
TACGTTCCCTTTGGCTCTCCAAGGCCGAGTGGCACAGGAGGAGGAGGTTC
CACGCGTGGTGCTGGCCAGCAAGGGCGACGAGAAGTTGTTGCATGTGATC
CGGCATGTCTTGATCAAGGGAGGGCTGAAACCGGAATTGTTTGTAGAGCT
AATAGAAGGAATGCTAGTGCCTACCTGGCATTTTGAACACAT
back to top
Synonyms
Publications