jgi.p|Nanoce1779_2|627055, mRNA_1775 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|627055
Unique NamemRNA_1775
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1121
Alignment locationscaffold_1:1489891..1491289 -

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Properties
Property NameValue
TranscriptId627141
TrackFilteredModels2
ProteinId627055
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:1489891..1491289 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|627055gene_1775Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|627055mRNA_1775-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1775CDS_1775Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1775 ID=mRNA_1775|Name=jgi.p|Nanoce1779_2|627055|organism=Nannochloropsis oceanica|type=mRNA|length=1121bp
GGGGAGGAGATAAAAGCAACAAAAGCGATGGAGGGCGGACGAGATTTGCT
GTTTTTGTGTGGCTTGATTTGGCTTTTTTGACAAGTGACATGAGGCACTG
TTTCATCTTCGTGTAATTCACGCATTTCTGCTTCTTTTCGCTCTCCACCA
CAGTGGACTGCATTTGTTTTGTTGTATCACCTCCTCTAAGCGGCGGCGTC
AAGGCAGAGAGCACTTCTGAGGTGGTGTGGTAGGACGAAGGCAAGGCACG
CGCACCGACGCAAACCAGACATTGAGTCCTAGGCAACACATTGCGCCCAC
GCCGTCGAGCTGCTGCTCTGCCGACAAGACTGCGGACGAGCATGCCCTTT
CTCCCCTTCCGTCTTTCCTTTCTCCCCACCACTTTCATCCTCACTTTCTT
GATGCTGCTCCTTCTCCCTGCTGCCCGGCGCGTGGCCGCCACGACCGCCT
CTTGCAAGCCCACCCCCTCTCGTGCTGCGGCATTCCTACCCACCATTGTC
CGCTCCTTGTACAATGCTCCTACACCCGCCAACCGGTCTCCTTTTCCTGC
CTCTTCGACGTCGGCCTTGGTGTCGTCCCTGTACTGGAAACAGCGGCGAC
AGCATCAGATTTTGGCCTCGGTAAAGGTCCCTCAAGGAGCAGCTGGAGCT
GCAGTTGGACGAAGCACCTCTATGCCCGCAGGAGCCTCGTCAGCGGTGGT
CCGAGTTCTGGAAGAGGGCATTAAGAGGCCTGAGAGGGACGACCGGCAGT
ACCGGATGATATGGCTCCAGAATGGGATGCAGGTCCTCCTGACCTCGGAC
CCAACGACAGACATAGCGGCGGCGTCGATGAACATCCACGCAGGGCACTT
CCAAGACCCGGAGGAGTTCGCGGGCCTGGCCCATTTCCACGAGCACATGT
AAGGAGAGGAAGGAGATGAGGGAGAATAAGGAGAAGAAAAAGAAAAAGAA
AGGGTGCAGGAGAAGGAGGAATTTGTGCGAGCAAGGAGGGTGGAAGACGA
CGAAGGGGAAGCAAATTGATCTCGCTATTAAGTTTCTTTCCCTCCTTTGA
CTGCGAAAGTGCGCAAGGATCAAGGAGTGGCATTTACCCATTCACCCACT
CACTCCCTCCCCCTCTGCCTC
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protein sequence of jgi.p|Nanoce1779_2|627055

>mRNA_1775-protein ID=mRNA_1775-protein|Name=jgi.p|Nanoce1779_2|627055|organism=Nannochloropsis oceanica|type=polypeptide|length=187bp
MPFLPFRLSFLPTTFILTFLMLLLLPAARRVAATTASCKPTPSRAAAFLP
TIVRSLYNAPTPANRSPFPASSTSALVSSLYWKQRRQHQILASVKVPQGA
AGAAVGRSTSMPAGASSAVVRVLEEGIKRPERDDRQYRMIWLQNGMQVLL
TSDPTTDIAAASMNIHAGHFQDPEEFAGLAHFHEHM*
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mRNA from alignment at scaffold_1:1489891..1491289-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1775 ID=mRNA_1775|Name=jgi.p|Nanoce1779_2|627055|organism=Nannochloropsis oceanica|type=mRNA|length=1399bp|location=Sequence derived from alignment at scaffold_1:1489891..1491289- (Nannochloropsis oceanica)
GGGGAGGAGATAAAAGCAACAAAAGCGATGGAGGGCGGACGAGATTTGCT
GTTTTTGTGTGGCTTGATTTGGCTTTTTTGACAAGTGACATGAGGCACTG
TTTCATCTTCGTGTAATTCACGCATTTCTGCTTCTTTTCGCTCTCCACCA
CAGTGGACTGCATTTGTTTTGTTGTATCACCTCCTCTAAGCGGCGGCGTC
AAGGCAGAGAGCACTTCTGAGGTGGTGTGGTAGGACGAAGGCAAGGCACG
CGCACCGACGCAAACCAGACATTGAGTCCTAGGCAACACATTGCGCCCAC
GCCGTCGAGCTGCTGCTCTGCCGACAAGACTGCGGACGAGCATGCCCTTT
CTCCCCTTCCGTCTTTCCTTTCTCCCCACCACTTTCATCCTCACTTTCTT
GATGCTGCTCCTTCTCCCTGCTGCCCGGCGCGTGGCCGCCACGACCGCCT
CTTGCAAGCCCACCCCCTCTCGTGCTGCGGCATTCCTACCCACCATTGTC
CGCTCCTTGTACAATGCTCCTACACCCGCCAACCGGTCTCCTTTTCCTGC
CTCTTCGACGTCGGCCTTGGTGTCGTCCCTGTACTGGAAACAGCGGCGAC
AGCATCAGATTTTGGCCTCGGTAAAGGTCCCTCAAGGAGCAGCTGGAGCT
GCAGTTGGACGAAGGTGAGGGATTTTAACAAGACACTTAAGGGTCGTGTG
CCTAGAATTCATTGCTCTTGTGTTTAGTGCACCCCTGGAATGAACTCAAC
CGAGTCCAATAACCTTCCTCCCCCTCCCTCCCAACCTCGCCTGCATCCGT
CACAACGACAGCACCTCTATGCCCGCAGGAGCCTCGTCAGCGGTGGTCCG
AGTTCTGGAAGAGGGCATTAAGAGGCCTGAGAGGGACGACCGGCAGTACC
GGATGATATGGCTCCAGAATGGGATGCAGGTGAAGAAGGAGGGTGGGAGG
GCGGGATGGGAGAGGAAGGAGGAGACTGTCCCGAGCCGTCCCATTTCACG
AAGCATCCAAGATACACTCACGTGCATGTCCTCTCCTCTTGTTTCTCCCT
TACCCCCCAGGTCCTCCTGACCTCGGACCCAACGACAGACATAGCGGCGG
CGTCGATGAACATCCACGCAGGGCACTTCCAAGACCCGGAGGAGTTCGCG
GGCCTGGCCCATTTCCACGAGCACATGTAAGGAGAGGAAGGAGATGAGGG
AGAATAAGGAGAAGAAAAAGAAAAAGAAAGGGTGCAGGAGAAGGAGGAAT
TTGTGCGAGCAAGGAGGGTGGAAGACGACGAAGGGGAAGCAAATTGATCT
CGCTATTAAGTTTCTTTCCCTCCTTTGACTGCGAAAGTGCGCAAGGATCA
AGGAGTGGCATTTACCCATTCACCCACTCACTCCCTCCCCCTCTGCCTC
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Coding sequence (CDS) from alignment at scaffold_1:1489891..1491289-

>mRNA_1775 ID=mRNA_1775|Name=jgi.p|Nanoce1779_2|627055|organism=Nannochloropsis oceanica|type=CDS|length=1683bp|location=Sequence derived from alignment at scaffold_1:1489891..1491289- (Nannochloropsis oceanica)
GTCCTCCTGACCTCGGACCCAACGACAGACATAGCGGCGGCGTCGATGAA
CATCCACGCAGGGCACTTCCAAGACCCGGAGGAGTTCGCGGGCCTGGCCC
ATTTCCACGAGCACATGTAACACCTCTATGCCCGCAGGAGCCTCGTCAGC
GGTGGTCCGAGTTCTGGAAGAGGGCATTAAGAGGCCTGAGAGGGACGACC
GGCAGTACCGGATGATATGGCTCCAGAATGGGATGCAGATGCCCTTTCTC
CCCTTCCGTCTTTCCTTTCTCCCCACCACTTTCATCCTCACTTTCTTGAT
GCTGCTCCTTCTCCCTGCTGCCCGGCGCGTGGCCGCCACGACCGCCTCTT
GCAAGCCCACCCCCTCTCGTGCTGCGGCATTCCTACCCACCATTGTCCGC
TCCTTGTACAATGCTCCTACACCCGCCAACCGGTCTCCTTTTCCTGCCTC
TTCGACGTCGGCCTTGGTGTCGTCCCTGTACTGGAAACAGCGGCGACAGC
ATCAGATTTTGGCCTCGGTAAAGGTCCCTCAAGGAGCAGCTGGAGCTGCA
GTTGGACGAAGGTCCTCCTGACCTCGGACCCAACGACAGACATAGCGGCG
GCGTCGATGAACATCCACGCAGGGCACTTCCAAGACCCGGAGGAGTTCGC
GGGCCTGGCCCATTTCCACGAGCACATGTAACACCTCTATGCCCGCAGGA
GCCTCGTCAGCGGTGGTCCGAGTTCTGGAAGAGGGCATTAAGAGGCCTGA
GAGGGACGACCGGCAGTACCGGATGATATGGCTCCAGAATGGGATGCAGA
TGCCCTTTCTCCCCTTCCGTCTTTCCTTTCTCCCCACCACTTTCATCCTC
ACTTTCTTGATGCTGCTCCTTCTCCCTGCTGCCCGGCGCGTGGCCGCCAC
GACCGCCTCTTGCAAGCCCACCCCCTCTCGTGCTGCGGCATTCCTACCCA
CCATTGTCCGCTCCTTGTACAATGCTCCTACACCCGCCAACCGGTCTCCT
TTTCCTGCCTCTTCGACGTCGGCCTTGGTGTCGTCCCTGTACTGGAAACA
GCGGCGACAGCATCAGATTTTGGCCTCGGTAAAGGTCCCTCAAGGAGCAG
CTGGAGCTGCAGTTGGACGAAGGTCCTCCTGACCTCGGACCCAACGACAG
ACATAGCGGCGGCGTCGATGAACATCCACGCAGGGCACTTCCAAGACCCG
GAGGAGTTCGCGGGCCTGGCCCATTTCCACGAGCACATGTAACACCTCTA
TGCCCGCAGGAGCCTCGTCAGCGGTGGTCCGAGTTCTGGAAGAGGGCATT
AAGAGGCCTGAGAGGGACGACCGGCAGTACCGGATGATATGGCTCCAGAA
TGGGATGCAGATGCCCTTTCTCCCCTTCCGTCTTTCCTTTCTCCCCACCA
CTTTCATCCTCACTTTCTTGATGCTGCTCCTTCTCCCTGCTGCCCGGCGC
GTGGCCGCCACGACCGCCTCTTGCAAGCCCACCCCCTCTCGTGCTGCGGC
ATTCCTACCCACCATTGTCCGCTCCTTGTACAATGCTCCTACACCCGCCA
ACCGGTCTCCTTTTCCTGCCTCTTCGACGTCGGCCTTGGTGTCGTCCCTG
TACTGGAAACAGCGGCGACAGCATCAGATTTTGGCCTCGGTAAAGGTCCC
TCAAGGAGCAGCTGGAGCTGCAGTTGGACGAAG
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Synonyms
Publications