jgi.p|Nanoce1779_2|17068, mRNA_1773 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|17068
Unique Name	mRNA_1773
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	873
Alignment location	scaffold_1:1480894..1482243 +

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Properties


Property Name	Value
TranscriptId	17154
Track	FilteredModels2
ProteinId	17068

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:1480894..1482243 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|17068	gene_1773	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|17068	mRNA_1773-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1773	CDS_1773	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:1480894..1482243+
coding sequence from alignment at scaffold_1:1480894..1482243+

mRNA sequence

>mRNA_1773 ID=mRNA_1773|Name=jgi.p|Nanoce1779_2|17068|organism=Nannochloropsis oceanica|type=mRNA|length=873bp
TGTGTCCGTCTGGAGAAGAGTGGGAAGAGAGGGACAGGAAGAGGGGGAGG
ACGCGTAGAAGATGTCGACTACTCATTTTCTTTCCTATTCCACCATGCGC
AGATTGAGGCCATGAAGCAGCCCCCTTCCTCCCTCCCGACCTCCTTCGGT
TCCTCCTTCTTGACCTTGGCAGTGAACACGTCGGCAGCGTTTGCGGCCCA
GCATCCGGTAGAGGCCTTCCAGGTGTCGCAGCAGGCGGTGCAGATGGTCT
GGGACGGGCTAATCGCCGAGGGAGGGGTTGAAGGCGTCATCAAGACGACG
AGCGACGTATTTGTCTCGGGCGACACCAGGCGCGAGGTCGATACTGCCCT
GTTCATTCTGCCCCTCGCAATCACCCCTGCATCCACCCCTCCCTCCCTCC
CTTCCTCCGCCCCTTCCTCGATTGTGCGGAACACCTTGCCCCCGCTGAAG
AACGACGACGACTTGCGGACTGCCTTGTTGGGTCAAAGCGGCGGGAACAG
GTGGCTGGAGACACGCGAGAAGAAGCTTCTGACCAAGCTCGCTGACTTCC
ACCTCCTTGTCTACCTCGCCAAGTACCTCCGCACGGATGATCTGACCAAA
CTCTGCACCGCCATCGTCGCCCTCGGCGGAGGAGGGAAGGGGGGAGAAAG
GGGAGGAGGGAAGGGGGGAGGAAGGGGAGGAGGGAAGGGAAAGAGTTTAG
GAAGTCCAACAGTCCCACCGGCGGTACGGGCGCTCTTAGAGGCCTTGTGC
GAGGAGGGGTGAAAAATCGAGCGTGAAGAAGGAATAGGGGAGAGAAGAAT
CAAAGCAAAGAAAAATAAGCCGGTAAATCATGACGGCCATAAAGAAGGCG
GCAAAACGTTCCTAGAGAAGACA

protein sequence of jgi.p|Nanoce1779_2|17068

>mRNA_1773-protein ID=mRNA_1773-protein|Name=jgi.p|Nanoce1779_2|17068|organism=Nannochloropsis oceanica|type=polypeptide|length=217bp
MKQPPSSLPTSFGSSFLTLAVNTSAAFAAQHPVEAFQVSQQAVQMVWDGL
IAEGGVEGVIKTTSDVFVSGDTRREVDTALFILPLAITPASTPPSLPSSA
PSSIVRNTLPPLKNDDDLRTALLGQSGGNRWLETREKKLLTKLADFHLLV
YLAKYLRTDDLTKLCTAIVALGGGGKGGERGGGKGGGRGGGKGKSLGSPT
VPPAVRALLEALCEEG*

mRNA from alignment at scaffold_1:1480894..1482243+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1773 ID=mRNA_1773|Name=jgi.p|Nanoce1779_2|17068|organism=Nannochloropsis oceanica|type=mRNA|length=1350bp|location=Sequence derived from alignment at scaffold_1:1480894..1482243+ (Nannochloropsis oceanica)
TGTGTCCGTCTGGAGAAGAGTGGGAAGAGAGGGACAGGAAGAGGGGGAGG
ACGCGTAGAAGATGTCGACTACTCATTTTCTTTCCTATTCCACCATGCGC
AGATTGAGGCCATGAAGCAGCCCCCTTCCTCCCTCCCGACCTCCTTCGGT
TCCTCCTTCTTGACCTTGGCAGTGAACACGTCGGCAGCGTTTGCGGCCCA
GCATCCGGTAGAGGCCTTCCAGGTGTCGCAGCAGGCGGTGCAGATGGTCT
GGGACGGGCTAATCGCCGAGGGAGGGGTTGAAGGCGTCATCAAGACGACG
AGGTAAGGAGTAAGGGACATGGGCGAGACACTGCACAGGCTCGTTGTTCA
CCCTCCCGTCCTCCCTCCCTCCCTCCCTCCCTTCCTTCCTCCACTCATAC
AGCGACGTATTTGTCTCGGGCGACACCAGGCGCGAGGTCGATACTGCCCT
GTTCATTCTGCCCCTCGCAATCACCCCTGCATCCACCCCTCCCTCCCTCC
CTTCCTCCGCCCCTTCCTCGATTGTGCGGAACACCTTGCCCCCGCTGAAG
AACGACGACGACTTGCGGACTGCCTTGTTGGGTCAAAGCGGCGGGAACAG
GTAGGGGGAATGGAGGGGGAAGAAGGGAGGGAGGGAAAGAGGGAGGGAGT
GGAGGAGGGAGGAAGAGCTCTATGACCCATCGGACGGAGGGAGGGAGAAT
GGGAGGAAGATCGGGTGCATTCTTCATTTCACTAGATCGGCCATTAACAT
AAACCAATACGCAGGTGGCTGGAGACACGCGAGAAGAAGCTTCTGACCAA
GCTCGCTGACTTCCACCTCCTTGTCTACCTCGCCAAGTGCGTACATGTCC
TTTTTTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCACCCT
CCCTCCCTCCCTCCCTCTGACTCGCGAAGCTTTGTTTTCCCTCCCTCCCT
CTGACTCGCGAAGCTTCGTTTTCCCTCCCTCCCTCTGACTCGCGAAGCTT
CGTTTTCCCTCCCTCCCTCCTTCCTCCCCTCCCTCTCCCTCATTACCAGG
TACCTCCGCACGGATGATCTGACCAAACTCTGCACCGCCATCGTCGCCCT
CGGCGGAGGAGGGAAGGGGGGAGAAAGGGGAGGAGGGAAGGGGGGAGGAA
GGGGAGGAGGGAAGGGAAAGAGTTTAGGAAGTCCAACAGTCCCACCGGCG
GTACGGGCGCTCTTAGAGGCCTTGTGCGAGGAGGGGTGAAAAATCGAGCG
TGAAGAAGGAATAGGGGAGAGAAGAATCAAAGCAAAGAAAAATAAGCCGG
TAAATCATGACGGCCATAAAGAAGGCGGCAAAACGTTCCTAGAGAAGACA

Coding sequence (CDS) from alignment at scaffold_1:1480894..1482243+

>mRNA_1773 ID=mRNA_1773|Name=jgi.p|Nanoce1779_2|17068|organism=Nannochloropsis oceanica|type=CDS|length=2604bp|location=Sequence derived from alignment at scaffold_1:1480894..1482243+ (Nannochloropsis oceanica)
ATGAAGCAGCCCCCTTCCTCCCTCCCGACCTCCTTCGGTTCCTCCTTCTT
GACCTTGGCAGTGAACACGTCGGCAGCGTTTGCGGCCCAGCATCCGGTAG
AGGCCTTCCAGGTGTCGCAGCAGGCGGTGCAGATGGTCTGGGACGGGCTA
ATCGCCGAGGGAGGGGTTGAAGGCGTCATCAAGACGACGAGCGACGTATT
TGTCTCGGGCGACACCAGGCGCGAGGTCGATACTGCCCTGTTCATTCTGC
CCCTCGCAATCACCCCTGCATCCACCCCTCCCTCCCTCCCTTCCTCCGCC
CCTTCCTCGATTGTGCGGAACACCTTGCCCCCGCTGAAGAACGACGACGA
CTTGCGGACTGCCTTGTTGGGTCAAAGCGGCGGGAACAGGTGGCTGGAGA
CACGCGAGAAGAAGCTTCTGACCAAGCTCGCTGACTTCCACCTCCTTGTC
TACCTCGCCAAGTACCTCCGCACGGATGATCTGACCAAACTCTGCACCGC
CATCGTCGCCCTCGGCGGAGGAGGGAAGGGGGGAGAAAGGGGAGGAGGGA
AGGGGGGAGGAAGGGGAGGAGGGAAGGGAAAGAGTTTAGGAAGTCCAACA
GTCCCACCGGCGGTACGGGCGCTCTTAGAGGCCTTGTGCGAGGAGGGGTG
AATGAAGCAGCCCCCTTCCTCCCTCCCGACCTCCTTCGGTTCCTCCTTCT
TGACCTTGGCAGTGAACACGTCGGCAGCGTTTGCGGCCCAGCATCCGGTA
GAGGCCTTCCAGGTGTCGCAGCAGGCGGTGCAGATGGTCTGGGACGGGCT
AATCGCCGAGGGAGGGGTTGAAGGCGTCATCAAGACGACGAGCGACGTAT
TTGTCTCGGGCGACACCAGGCGCGAGGTCGATACTGCCCTGTTCATTCTG
CCCCTCGCAATCACCCCTGCATCCACCCCTCCCTCCCTCCCTTCCTCCGC
CCCTTCCTCGATTGTGCGGAACACCTTGCCCCCGCTGAAGAACGACGACG
ACTTGCGGACTGCCTTGTTGGGTCAAAGCGGCGGGAACAGGTGGCTGGAG
ACACGCGAGAAGAAGCTTCTGACCAAGCTCGCTGACTTCCACCTCCTTGT
CTACCTCGCCAAGTACCTCCGCACGGATGATCTGACCAAACTCTGCACCG
CCATCGTCGCCCTCGGCGGAGGAGGGAAGGGGGGAGAAAGGGGAGGAGGG
AAGGGGGGAGGAAGGGGAGGAGGGAAGGGAAAGAGTTTAGGAAGTCCAAC
AGTCCCACCGGCGGTACGGGCGCTCTTAGAGGCCTTGTGCGAGGAGGGGT
GAATGAAGCAGCCCCCTTCCTCCCTCCCGACCTCCTTCGGTTCCTCCTTC
TTGACCTTGGCAGTGAACACGTCGGCAGCGTTTGCGGCCCAGCATCCGGT
AGAGGCCTTCCAGGTGTCGCAGCAGGCGGTGCAGATGGTCTGGGACGGGC
TAATCGCCGAGGGAGGGGTTGAAGGCGTCATCAAGACGACGAGCGACGTA
TTTGTCTCGGGCGACACCAGGCGCGAGGTCGATACTGCCCTGTTCATTCT
GCCCCTCGCAATCACCCCTGCATCCACCCCTCCCTCCCTCCCTTCCTCCG
CCCCTTCCTCGATTGTGCGGAACACCTTGCCCCCGCTGAAGAACGACGAC
GACTTGCGGACTGCCTTGTTGGGTCAAAGCGGCGGGAACAGGTGGCTGGA
GACACGCGAGAAGAAGCTTCTGACCAAGCTCGCTGACTTCCACCTCCTTG
TCTACCTCGCCAAGTACCTCCGCACGGATGATCTGACCAAACTCTGCACC
GCCATCGTCGCCCTCGGCGGAGGAGGGAAGGGGGGAGAAAGGGGAGGAGG
GAAGGGGGGAGGAAGGGGAGGAGGGAAGGGAAAGAGTTTAGGAAGTCCAA
CAGTCCCACCGGCGGTACGGGCGCTCTTAGAGGCCTTGTGCGAGGAGGGG
TGAATGAAGCAGCCCCCTTCCTCCCTCCCGACCTCCTTCGGTTCCTCCTT
CTTGACCTTGGCAGTGAACACGTCGGCAGCGTTTGCGGCCCAGCATCCGG
TAGAGGCCTTCCAGGTGTCGCAGCAGGCGGTGCAGATGGTCTGGGACGGG
CTAATCGCCGAGGGAGGGGTTGAAGGCGTCATCAAGACGACGAGCGACGT
ATTTGTCTCGGGCGACACCAGGCGCGAGGTCGATACTGCCCTGTTCATTC
TGCCCCTCGCAATCACCCCTGCATCCACCCCTCCCTCCCTCCCTTCCTCC
GCCCCTTCCTCGATTGTGCGGAACACCTTGCCCCCGCTGAAGAACGACGA
CGACTTGCGGACTGCCTTGTTGGGTCAAAGCGGCGGGAACAGGTGGCTGG
AGACACGCGAGAAGAAGCTTCTGACCAAGCTCGCTGACTTCCACCTCCTT
GTCTACCTCGCCAAGTACCTCCGCACGGATGATCTGACCAAACTCTGCAC
CGCCATCGTCGCCCTCGGCGGAGGAGGGAAGGGGGGAGAAAGGGGAGGAG
GGAAGGGGGGAGGAAGGGGAGGAGGGAAGGGAAAGAGTTTAGGAAGTCCA
ACAGTCCCACCGGCGGTACGGGCGCTCTTAGAGGCCTTGTGCGAGGAGGG
GTGA

Synonyms

Publications