jgi.p|Nanoce1779_2|573391, mRNA_1769 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|573391
Unique Name	mRNA_1769
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1477
Alignment location	scaffold_1:1465834..1467310 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	573477
Track	FilteredModels2
ProteinId	573391

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:1465834..1467310 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|573391	gene_1769	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|573391	mRNA_1769-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1769	CDS_1769	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:1465834..1467310+
coding sequence from alignment at scaffold_1:1465834..1467310+

mRNA sequence

>mRNA_1769 ID=mRNA_1769|Name=jgi.p|Nanoce1779_2|573391|organism=Nannochloropsis oceanica|type=mRNA|length=1477bp
AGGAAACATACCTACAGTCAAGACAATGCCGTCCATTTACGAGCTTAAGA
AGACGCTGGGTCTCAAAGCTGGCGAGGTGCTGAGTGACGGCTATGTGGTC
AAGGACGTCGAGGTTCGTTTTGCTGGGTAGGAAGGGCGGCGTTTTTGGTC
ATGAGTGTCTTCAAGCAAGGACGACAAAGAGAATGACAAACTGGCAAAAA
TCCTCCCTAAACTGTGAGTAAACCGATCCGTCTAATTCAGAATTTTTTCT
GTCGGATATTTCATTGTCTCCCTTACATGTCCTTCTTACTTATTTTTCGA
GGGGTGGGGATCACGACAAGAAAAGGTTGTGGTGAACAGAGCTATGTGCT
TGGGCGACGAAATTATGTGTCTGTGTATACATTTGAGGGTAGAACCATTG
ACAAGCCTTCTCGTGCTCAAAGCCGTTTCACCTTTCACCACTATCTTGCT
TTTGTCTCCCTACCTCCTTCCGTTTCCCAACTTCTCTGGGTTCTCATTTA
CCCCCCTTTGGTTGCAGGCCACTATGGACGAGAAAAAGCCGCGTGAGCTC
TACAACTTCAAGGTCCACCTCTGGCTCTCACCTCCCTCGTCACATTTGCC
TGGCCAGAAGCGTAGTCATGTTATGTGTAATGACTTGCTGGAAGACGCAA
AGCAAGCTCTTCTGCAGACGGCGGAGGAGCGGAAGATCATGTATAGTTCT
TATGGCTCTCCTTACGAGATGCACCTGGAGCACATCAGGGCTATATCCTC
TGGGCTGATGCAGCAAGAGCAGGAAGATAAAGGGGAATACCAAAAGCAAG
AGTGGCAGGAGGACGAGGATGAGATAGGGCTGATTGAGGTGCATGCTTTG
GCGGTGGCCAAGCGCCGCAGGGACTTACCTCGTCTTTCAGAATTAGAGAA
GGGAACGAGCGAAAATGAAGAGGAGGCGGCAGACGATGAGATGAAGCGAC
AGGGATATCGAATAGTGAAGGCACATTTTAAGTCTGGCCATTGCCCTCTT
TGCGGGAATGAGGTCGCGCTCGGTGAGCATATTGCCAAGCCCAAAGAGGA
CCGCAGCCGCGGGGGATGGGCACATTCCACATGCCTCGCCAACTGCCCTG
AGATGCCGATGACTCCCACGAAAACAATTATGGATGGAGAGGGGGCCATT
ACGAATATCAAGGAATGATAAGAATAGAGACGTGAAGGCGGGGAGAGAGG
GAGAGAGATACAAGCAAGCGGGTATGAGTGAAGTGGTTGCGAGAGATATA
GTGTAAGAGCTTCTTGAGAAGAGAATGATGAAGAGGGAGAGGAAAAACGT
GAGCAGCATAGACGAAGATTCGAAGAGTCTTGATTTTAATGCCTGTGTGT
GATAACAGATACAGAAAAAGTGGGCGTGAGGGTATGTCAGATTGGTCTCA
AAAGAGGAATCTTTGAGACCCAAAAAATCGAGAATCCATACACGTAGAAT
CTCTTTCAAATCGCCTCACCGTCTCCA

protein sequence of jgi.p|Nanoce1779_2|573391

>mRNA_1769-protein ID=mRNA_1769-protein|Name=jgi.p|Nanoce1779_2|573391|organism=Nannochloropsis oceanica|type=polypeptide|length=275bp
MCLGDEIMCLCIHLRVEPLTSLLVLKAVSPFTTILLLSPYLLPFPNFSGF
SFTPLWLQATMDEKKPRELYNFKVHLWLSPPSSHLPGQKRSHVMCNDLLE
DAKQALLQTAEERKIMYSSYGSPYEMHLEHIRAISSGLMQQEQEDKGEYQ
KQEWQEDEDEIGLIEVHALAVAKRRRDLPRLSELEKGTSENEEEAADDEM
KRQGYRIVKAHFKSGHCPLCGNEVALGEHIAKPKEDRSRGGWAHSTCLAN
CPEMPMTPTKTIMDGEGAITNIKE*

mRNA from alignment at scaffold_1:1465834..1467310+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1769 ID=mRNA_1769|Name=jgi.p|Nanoce1779_2|573391|organism=Nannochloropsis oceanica|type=mRNA|length=1477bp|location=Sequence derived from alignment at scaffold_1:1465834..1467310+ (Nannochloropsis oceanica)
AGGAAACATACCTACAGTCAAGACAATGCCGTCCATTTACGAGCTTAAGA
AGACGCTGGGTCTCAAAGCTGGCGAGGTGCTGAGTGACGGCTATGTGGTC
AAGGACGTCGAGGTTCGTTTTGCTGGGTAGGAAGGGCGGCGTTTTTGGTC
ATGAGTGTCTTCAAGCAAGGACGACAAAGAGAATGACAAACTGGCAAAAA
TCCTCCCTAAACTGTGAGTAAACCGATCCGTCTAATTCAGAATTTTTTCT
GTCGGATATTTCATTGTCTCCCTTACATGTCCTTCTTACTTATTTTTCGA
GGGGTGGGGATCACGACAAGAAAAGGTTGTGGTGAACAGAGCTATGTGCT
TGGGCGACGAAATTATGTGTCTGTGTATACATTTGAGGGTAGAACCATTG
ACAAGCCTTCTCGTGCTCAAAGCCGTTTCACCTTTCACCACTATCTTGCT
TTTGTCTCCCTACCTCCTTCCGTTTCCCAACTTCTCTGGGTTCTCATTTA
CCCCCCTTTGGTTGCAGGCCACTATGGACGAGAAAAAGCCGCGTGAGCTC
TACAACTTCAAGGTCCACCTCTGGCTCTCACCTCCCTCGTCACATTTGCC
TGGCCAGAAGCGTAGTCATGTTATGTGTAATGACTTGCTGGAAGACGCAA
AGCAAGCTCTTCTGCAGACGGCGGAGGAGCGGAAGATCATGTATAGTTCT
TATGGCTCTCCTTACGAGATGCACCTGGAGCACATCAGGGCTATATCCTC
TGGGCTGATGCAGCAAGAGCAGGAAGATAAAGGGGAATACCAAAAGCAAG
AGTGGCAGGAGGACGAGGATGAGATAGGGCTGATTGAGGTGCATGCTTTG
GCGGTGGCCAAGCGCCGCAGGGACTTACCTCGTCTTTCAGAATTAGAGAA
GGGAACGAGCGAAAATGAAGAGGAGGCGGCAGACGATGAGATGAAGCGAC
AGGGATATCGAATAGTGAAGGCACATTTTAAGTCTGGCCATTGCCCTCTT
TGCGGGAATGAGGTCGCGCTCGGTGAGCATATTGCCAAGCCCAAAGAGGA
CCGCAGCCGCGGGGGATGGGCACATTCCACATGCCTCGCCAACTGCCCTG
AGATGCCGATGACTCCCACGAAAACAATTATGGATGGAGAGGGGGCCATT
ACGAATATCAAGGAATGATAAGAATAGAGACGTGAAGGCGGGGAGAGAGG
GAGAGAGATACAAGCAAGCGGGTATGAGTGAAGTGGTTGCGAGAGATATA
GTGTAAGAGCTTCTTGAGAAGAGAATGATGAAGAGGGAGAGGAAAAACGT
GAGCAGCATAGACGAAGATTCGAAGAGTCTTGATTTTAATGCCTGTGTGT
GATAACAGATACAGAAAAAGTGGGCGTGAGGGTATGTCAGATTGGTCTCA
AAAGAGGAATCTTTGAGACCCAAAAAATCGAGAATCCATACACGTAGAAT
CTCTTTCAAATCGCCTCACCGTCTCCA

Coding sequence (CDS) from alignment at scaffold_1:1465834..1467310+

>mRNA_1769 ID=mRNA_1769|Name=jgi.p|Nanoce1779_2|573391|organism=Nannochloropsis oceanica|type=CDS|length=825bp|location=Sequence derived from alignment at scaffold_1:1465834..1467310+ (Nannochloropsis oceanica)
ATGTGCTTGGGCGACGAAATTATGTGTCTGTGTATACATTTGAGGGTAGA
ACCATTGACAAGCCTTCTCGTGCTCAAAGCCGTTTCACCTTTCACCACTA
TCTTGCTTTTGTCTCCCTACCTCCTTCCGTTTCCCAACTTCTCTGGGTTC
TCATTTACCCCCCTTTGGTTGCAGGCCACTATGGACGAGAAAAAGCCGCG
TGAGCTCTACAACTTCAAGGTCCACCTCTGGCTCTCACCTCCCTCGTCAC
ATTTGCCTGGCCAGAAGCGTAGTCATGTTATGTGTAATGACTTGCTGGAA
GACGCAAAGCAAGCTCTTCTGCAGACGGCGGAGGAGCGGAAGATCATGTA
TAGTTCTTATGGCTCTCCTTACGAGATGCACCTGGAGCACATCAGGGCTA
TATCCTCTGGGCTGATGCAGCAAGAGCAGGAAGATAAAGGGGAATACCAA
AAGCAAGAGTGGCAGGAGGACGAGGATGAGATAGGGCTGATTGAGGTGCA
TGCTTTGGCGGTGGCCAAGCGCCGCAGGGACTTACCTCGTCTTTCAGAAT
TAGAGAAGGGAACGAGCGAAAATGAAGAGGAGGCGGCAGACGATGAGATG
AAGCGACAGGGATATCGAATAGTGAAGGCACATTTTAAGTCTGGCCATTG
CCCTCTTTGCGGGAATGAGGTCGCGCTCGGTGAGCATATTGCCAAGCCCA
AAGAGGACCGCAGCCGCGGGGGATGGGCACATTCCACATGCCTCGCCAAC
TGCCCTGAGATGCCGATGACTCCCACGAAAACAATTATGGATGGAGAGGG
GGCCATTACGAATATCAAGGAATGA

Synonyms

Publications