jgi.p|Nanoce1779_2|549688, mRNA_1768 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|549688
Unique Name	mRNA_1768
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1734
Alignment location	scaffold_1:1463075..1464808 -

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Properties


Property Name	Value
TranscriptId	549774
Track	FilteredModels2
ProteinId	549688

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:1463075..1464808 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|549688	gene_1768	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|549688	mRNA_1768-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1768	CDS_1768	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:1463075..1464808-
coding sequence from alignment at scaffold_1:1463075..1464808-

mRNA sequence

>mRNA_1768 ID=mRNA_1768|Name=jgi.p|Nanoce1779_2|549688|organism=Nannochloropsis oceanica|type=mRNA|length=1734bp
ATGAATGAAGGTGAGGATACCGAAGCCGCAATCACTACCAACTCTGCCTC
CAAGAACACATCTGCACTCCTACATCAGCTGGACATTGGTGGCCTGGATG
GCCCCGTTATAACCTTGCTGCGCCGGGCCTTGGCATCGCGCCTCCTGTCT
CCGGACATGGCCAAGCGACTTGGCGTCAAGCACGTCCGGGGCATTTTGTT
ACACGGGCCACCAGGCACGGGTAAGACGCTCGTGGCACGTCAACTCGCCG
CATTACTGCATGCTGCTAAACCTAAACTCATTTCTGGGCCAGAGCTTCTG
TCCATGTGGGTGGGTAAGAGCGAAGAGAATATCCGGGCCATTTTCCAGGA
CGCTGAACAAGAATTCAAGGAGAAAGGCAGCGCCTCGGCCTTGCACGTAA
TCATATTTGACGAGATAGACGCCTTGACGCGAAAGCGGGGGACGCTGCGG
GATTCGTCGGGAGTTCTGGACAGCTGCGTTAACCAGCTTCTTTCCAAGAT
CGACGGGTTGGCGGCCTTTGACAACATATTGTGCATCGGCACCACCAACC
GGAAAGACCTCCTGGATGACGCACTCTTACGCCCAGGCCGTCTTGAGGTC
CATGTGGAGGTTGGTCTACCCGACGAAGCAGGCCGGGCACAGATATTTCA
TATTCATACCCGGGGTTTTGCCAACGAGGGTTGCTTGTCCGCCGACGTAG
ACTTCCACCAGCTCGCACGATTGACGCCTAATTTTACTGGCGCGGAGATC
GAGGGCGTCGTCAAGGGAGGCTTGTCTTTTGCCTTACAGCGACAGGTCAG
TCGTAAGCATGATGTGCTGGATGCTGATGTAATTAAAAGCGACTTATCAT
CGTCGAAATTGAACTTGTGTATGCTTGACTTGCTGCGGGCGCTCCGCGAA
GCAAAGCCCCACTTTGGCGCTGCGAGCCAGCAGTGGGCCACGCACCAACG
CATGGGGTTTGTGGCCTTCCGCCCCGAGGTACCGACCCTCGTCCAGAGCC
TACTAACTACCCTCGATCAAGCTCGTAACGGTGGCCAGCTGCCCCTTGTG
ACGATTCTTCTTCAAGGCCCTCCCGGCGCTGGGAAGTCGGCTGTGCTTGC
TCACCTTGGCTCCTTGGCCGGCGGGTTTACCTTTCGTCGACATCTCACGG
GGCAAGAACTTGCGAGCTTGGGAGAAGAAGCCGCATGCGACACACTAGCC
CAAGCTGTACAGGATGCGCACCAATGCCCACATTCCCTGCTGATGCTGGA
CGACTTGGAGGGCCTTTCGCAGTACGTGCCGCTACAAGGCGGTCGAGTTT
CTTTGCCACGTCTTCATAGCCTCCTTGCAGTCCTCGGTCGTACCCCTGCA
AAAATGTCCCGAGTGGGGGTAGTGCTGGCTACCACATCGCTGGACCAAAA
GACGCTGTGTGCCCTTGGTCTATGGGAGAAATTTAGTGTCCGGGTAGCTT
TGCCTTTGGTTGAGACGGCGGGACATGTGGCGGCGTTGCTGGGCAAGGGT
GAGGGAGCTGGGAAGAGCACAATGCTGCGAAAGGAAGAGAATGGACCATG
GACGGTGCGGGAATTGTTGCAACGACAAGCGCTCAATACGGAGGAGGAAA
AGAAAATAGAGGAAGACGAAGGGAGCCATAATTAACAGTAATTGATTTCA
GGATTTTAAATTAGTAAGGCTTTCTTGCCATGACCAACAATGGTCGACAC
GTAATGATAACATTGGTTAGCAATGTACTAGATC

protein sequence of jgi.p|Nanoce1779_2|549688

>mRNA_1768-protein ID=mRNA_1768-protein|Name=jgi.p|Nanoce1779_2|549688|organism=Nannochloropsis oceanica|type=polypeptide|length=545bp
MNEGEDTEAAITTNSASKNTSALLHQLDIGGLDGPVITLLRRALASRLLS
PDMAKRLGVKHVRGILLHGPPGTGKTLVARQLAALLHAAKPKLISGPELL
SMWVGKSEENIRAIFQDAEQEFKEKGSASALHVIIFDEIDALTRKRGTLR
DSSGVLDSCVNQLLSKIDGLAAFDNILCIGTTNRKDLLDDALLRPGRLEV
HVEVGLPDEAGRAQIFHIHTRGFANEGCLSADVDFHQLARLTPNFTGAEI
EGVVKGGLSFALQRQVSRKHDVLDADVIKSDLSSSKLNLCMLDLLRALRE
AKPHFGAASQQWATHQRMGFVAFRPEVPTLVQSLLTTLDQARNGGQLPLV
TILLQGPPGAGKSAVLAHLGSLAGGFTFRRHLTGQELASLGEEAACDTLA
QAVQDAHQCPHSLLMLDDLEGLSQYVPLQGGRVSLPRLHSLLAVLGRTPA
KMSRVGVVLATTSLDQKTLCALGLWEKFSVRVALPLVETAGHVAALLGKG
EGAGKSTMLRKEENGPWTVRELLQRQALNTEEEKKIEEDEGSHN*

mRNA from alignment at scaffold_1:1463075..1464808-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1768 ID=mRNA_1768|Name=jgi.p|Nanoce1779_2|549688|organism=Nannochloropsis oceanica|type=mRNA|length=1734bp|location=Sequence derived from alignment at scaffold_1:1463075..1464808- (Nannochloropsis oceanica)
ATGAATGAAGGTGAGGATACCGAAGCCGCAATCACTACCAACTCTGCCTC
CAAGAACACATCTGCACTCCTACATCAGCTGGACATTGGTGGCCTGGATG
GCCCCGTTATAACCTTGCTGCGCCGGGCCTTGGCATCGCGCCTCCTGTCT
CCGGACATGGCCAAGCGACTTGGCGTCAAGCACGTCCGGGGCATTTTGTT
ACACGGGCCACCAGGCACGGGTAAGACGCTCGTGGCACGTCAACTCGCCG
CATTACTGCATGCTGCTAAACCTAAACTCATTTCTGGGCCAGAGCTTCTG
TCCATGTGGGTGGGTAAGAGCGAAGAGAATATCCGGGCCATTTTCCAGGA
CGCTGAACAAGAATTCAAGGAGAAAGGCAGCGCCTCGGCCTTGCACGTAA
TCATATTTGACGAGATAGACGCCTTGACGCGAAAGCGGGGGACGCTGCGG
GATTCGTCGGGAGTTCTGGACAGCTGCGTTAACCAGCTTCTTTCCAAGAT
CGACGGGTTGGCGGCCTTTGACAACATATTGTGCATCGGCACCACCAACC
GGAAAGACCTCCTGGATGACGCACTCTTACGCCCAGGCCGTCTTGAGGTC
CATGTGGAGGTTGGTCTACCCGACGAAGCAGGCCGGGCACAGATATTTCA
TATTCATACCCGGGGTTTTGCCAACGAGGGTTGCTTGTCCGCCGACGTAG
ACTTCCACCAGCTCGCACGATTGACGCCTAATTTTACTGGCGCGGAGATC
GAGGGCGTCGTCAAGGGAGGCTTGTCTTTTGCCTTACAGCGACAGGTCAG
TCGTAAGCATGATGTGCTGGATGCTGATGTAATTAAAAGCGACTTATCAT
CGTCGAAATTGAACTTGTGTATGCTTGACTTGCTGCGGGCGCTCCGCGAA
GCAAAGCCCCACTTTGGCGCTGCGAGCCAGCAGTGGGCCACGCACCAACG
CATGGGGTTTGTGGCCTTCCGCCCCGAGGTACCGACCCTCGTCCAGAGCC
TACTAACTACCCTCGATCAAGCTCGTAACGGTGGCCAGCTGCCCCTTGTG
ACGATTCTTCTTCAAGGCCCTCCCGGCGCTGGGAAGTCGGCTGTGCTTGC
TCACCTTGGCTCCTTGGCCGGCGGGTTTACCTTTCGTCGACATCTCACGG
GGCAAGAACTTGCGAGCTTGGGAGAAGAAGCCGCATGCGACACACTAGCC
CAAGCTGTACAGGATGCGCACCAATGCCCACATTCCCTGCTGATGCTGGA
CGACTTGGAGGGCCTTTCGCAGTACGTGCCGCTACAAGGCGGTCGAGTTT
CTTTGCCACGTCTTCATAGCCTCCTTGCAGTCCTCGGTCGTACCCCTGCA
AAAATGTCCCGAGTGGGGGTAGTGCTGGCTACCACATCGCTGGACCAAAA
GACGCTGTGTGCCCTTGGTCTATGGGAGAAATTTAGTGTCCGGGTAGCTT
TGCCTTTGGTTGAGACGGCGGGACATGTGGCGGCGTTGCTGGGCAAGGGT
GAGGGAGCTGGGAAGAGCACAATGCTGCGAAAGGAAGAGAATGGACCATG
GACGGTGCGGGAATTGTTGCAACGACAAGCGCTCAATACGGAGGAGGAAA
AGAAAATAGAGGAAGACGAAGGGAGCCATAATTAACAGTAATTGATTTCA
GGATTTTAAATTAGTAAGGCTTTCTTGCCATGACCAACAATGGTCGACAC
GTAATGATAACATTGGTTAGCAATGTACTAGATC

Coding sequence (CDS) from alignment at scaffold_1:1463075..1464808-

>mRNA_1768 ID=mRNA_1768|Name=jgi.p|Nanoce1779_2|549688|organism=Nannochloropsis oceanica|type=CDS|length=1635bp|location=Sequence derived from alignment at scaffold_1:1463075..1464808- (Nannochloropsis oceanica)
ATGAATGAAGGTGAGGATACCGAAGCCGCAATCACTACCAACTCTGCCTC
CAAGAACACATCTGCACTCCTACATCAGCTGGACATTGGTGGCCTGGATG
GCCCCGTTATAACCTTGCTGCGCCGGGCCTTGGCATCGCGCCTCCTGTCT
CCGGACATGGCCAAGCGACTTGGCGTCAAGCACGTCCGGGGCATTTTGTT
ACACGGGCCACCAGGCACGGGTAAGACGCTCGTGGCACGTCAACTCGCCG
CATTACTGCATGCTGCTAAACCTAAACTCATTTCTGGGCCAGAGCTTCTG
TCCATGTGGGTGGGTAAGAGCGAAGAGAATATCCGGGCCATTTTCCAGGA
CGCTGAACAAGAATTCAAGGAGAAAGGCAGCGCCTCGGCCTTGCACGTAA
TCATATTTGACGAGATAGACGCCTTGACGCGAAAGCGGGGGACGCTGCGG
GATTCGTCGGGAGTTCTGGACAGCTGCGTTAACCAGCTTCTTTCCAAGAT
CGACGGGTTGGCGGCCTTTGACAACATATTGTGCATCGGCACCACCAACC
GGAAAGACCTCCTGGATGACGCACTCTTACGCCCAGGCCGTCTTGAGGTC
CATGTGGAGGTTGGTCTACCCGACGAAGCAGGCCGGGCACAGATATTTCA
TATTCATACCCGGGGTTTTGCCAACGAGGGTTGCTTGTCCGCCGACGTAG
ACTTCCACCAGCTCGCACGATTGACGCCTAATTTTACTGGCGCGGAGATC
GAGGGCGTCGTCAAGGGAGGCTTGTCTTTTGCCTTACAGCGACAGGTCAG
TCGTAAGCATGATGTGCTGGATGCTGATGTAATTAAAAGCGACTTATCAT
CGTCGAAATTGAACTTGTGTATGCTTGACTTGCTGCGGGCGCTCCGCGAA
GCAAAGCCCCACTTTGGCGCTGCGAGCCAGCAGTGGGCCACGCACCAACG
CATGGGGTTTGTGGCCTTCCGCCCCGAGGTACCGACCCTCGTCCAGAGCC
TACTAACTACCCTCGATCAAGCTCGTAACGGTGGCCAGCTGCCCCTTGTG
ACGATTCTTCTTCAAGGCCCTCCCGGCGCTGGGAAGTCGGCTGTGCTTGC
TCACCTTGGCTCCTTGGCCGGCGGGTTTACCTTTCGTCGACATCTCACGG
GGCAAGAACTTGCGAGCTTGGGAGAAGAAGCCGCATGCGACACACTAGCC
CAAGCTGTACAGGATGCGCACCAATGCCCACATTCCCTGCTGATGCTGGA
CGACTTGGAGGGCCTTTCGCAGTACGTGCCGCTACAAGGCGGTCGAGTTT
CTTTGCCACGTCTTCATAGCCTCCTTGCAGTCCTCGGTCGTACCCCTGCA
AAAATGTCCCGAGTGGGGGTAGTGCTGGCTACCACATCGCTGGACCAAAA
GACGCTGTGTGCCCTTGGTCTATGGGAGAAATTTAGTGTCCGGGTAGCTT
TGCCTTTGGTTGAGACGGCGGGACATGTGGCGGCGTTGCTGGGCAAGGGT
GAGGGAGCTGGGAAGAGCACAATGCTGCGAAAGGAAGAGAATGGACCATG
GACGGTGCGGGAATTGTTGCAACGACAAGCGCTCAATACGGAGGAGGAAA
AGAAAATAGAGGAAGACGAAGGGAGCCATAATTAA

Synonyms

Publications