jgi.p|Nanoce1779_2|16850, mRNA_1766 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|16850
Unique Name	mRNA_1766
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1621
Alignment location	scaffold_1:1458566..1460503 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	16936
Track	FilteredModels2
ProteinId	16850

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:1458566..1460503 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|16850	gene_1766	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|16850	mRNA_1766-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1766	CDS_1766	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:1458566..1460503+
coding sequence from alignment at scaffold_1:1458566..1460503+

mRNA sequence

>mRNA_1766 ID=mRNA_1766|Name=jgi.p|Nanoce1779_2|16850|organism=Nannochloropsis oceanica|type=mRNA|length=1621bp
CACACACGCACGCATTATTCCATCTCTTTACTTTGATTCGTTCGTTCATC
TTCACACCATTCCTGTCCAAAGTAGTCCATTAGGTACTAATTCCATGCAC
GCGGGTCGCATCCTTTCCATCTCTGTGCCCAATGGTAGTAGCGTGCCGGA
CGTCTCCTTTTCCTTCCATCATCAACGGCAGCAGCAGCAACAGCAACAGC
AACAACAGGAAAGCCGGGCGGAGGAGCAGGAGGAGACAGTGCGATGCCAC
CAAAGCCGAAATGAGTCCTCGTTGACGGCTGGGAGGGTATTGTCCGCTTC
CTCTTTCGTGATGGAAAAGGGGCGGGGTGACAAGAATGAAGCAGGAGTAG
GTGGGGCAGGGAAGGCAAGGGGAGGGATACCTCGCTTGGGACAGTCACCC
AATGCCGAAGATGATGCGGCACTTGTTCGTCTCCTCGCAGGGCTTCAAAG
GGAGGCTGATTACCTCACAAACAGGCACAGTACTAGCAGCAGTAGCAGCA
GCAGCTGTGGTGATAGCCCTTTCATCACACCAGTGGGATCCCACCACTTC
CAAGGCGCCCATCTGGAAGCCTTGGAAGCCCTCCTTGAGTCCAATGAAGG
CACCGACATCGAACTCCACCCCTCCTTCCGCCCTTCCTCCTCCTCCTCCT
TCACTCCCTCCTCCTATCCCTCCTCCTCCACCACCGTCTTCCCCCCCCCA
TTGACCCTCCATTCCAAAATCACCCGTCACGGAACCCGCATCTTTCGACC
CAAAACCCGAGTCCAGGTTCCCTGGTCCTACCCCGTCACACATGCCCTCG
CCACCTTCCTCTATACGGGCCGCCTCGTCGTCTCCACTGCCCACCTGGCC
GACACCTACCGCGCCGCGCAAGAGGCTGGGGTACGGTCTTTGGCCTACCT
CCTACGCACGCATCCTTTCTACGCCTTGCGCTTGACGAGTGCCGAAAAAG
CGAGCCACGTTCGCCGCTTCGCCGTGGTTGCCGGGAACGAAAGGCTCAGT
GCCCTCTGCGATGCTTACACGCGCCGGCTGGCCTCCCATAAAACCACATA
CACGCTGGTGGCCCCTGTGCCTTTTGCCTGGCTTCGGGCCCGCCCGCTTT
TGATAGGGGACAAGTCCCTCCTCCTCGCGTTCAGCCACCGCCCTTCCCCC
GTCCACGAAACGTCCAGCAATATCGTCCTCTCCATACAAGATCACCTCCC
CTCTTCCTCGCCCCCCTCCTCCCTCCCGCTTTCTCTTTGTCACAACACCT
GCCTCCGCCTCGACAAGGACCCTTCCACCCCCTGGTCCCCGACCTGGTTC
GCCTCCTCGTCTCCTCTCCCTCCCTCCCCCTCACCCGCCTGTATGGAGGG
TGACAAAAACGGACTTGTGTGGCTTTACGTCTTATGCTCTCAGGCACATG
CACCGGTCGTGCTCAAGGCGCTCCTCAGGTAGGGGAAAGGAGGGTATGAG
GGAGAGAGGGAGGAAAGAGACAGACTGAAGGAGACTTAATTAATCCATGA
GAGGGGAGAAGAAAGAGCGAACAGCCTAGCTACATGTCTGTACGTATGTG
TACTTATTCATGCAAGTCTTAACAGGGAGCTAAGCGTGTCCAAGGCACTG
TGCGACGCCGAGCCCCAGGCA

protein sequence of jgi.p|Nanoce1779_2|16850

>mRNA_1766-protein ID=mRNA_1766-protein|Name=jgi.p|Nanoce1779_2|16850|organism=Nannochloropsis oceanica|type=polypeptide|length=446bp
MHAGRILSISVPNGSSVPDVSFSFHHQRQQQQQQQQQQESRAEEQEETVR
CHQSRNESSLTAGRVLSASSFVMEKGRGDKNEAGVGGAGKARGGIPRLGQ
SPNAEDDAALVRLLAGLQREADYLTNRHSTSSSSSSSCGDSPFITPVGSH
HFQGAHLEALEALLESNEGTDIELHPSFRPSSSSSFTPSSYPSSSTTVFP
PPLTLHSKITRHGTRIFRPKTRVQVPWSYPVTHALATFLYTGRLVVSTAH
LADTYRAAQEAGVRSLAYLLRTHPFYALRLTSAEKASHVRRFAVVAGNER
LSALCDAYTRRLASHKTTYTLVAPVPFAWLRARPLLIGDKSLLLAFSHRP
SPVHETSSNIVLSIQDHLPSSSPPSSLPLSLCHNTCLRLDKDPSTPWSPT
WFASSSPLPPSPSPACMEGDKNGLVWLYVLCSQAHAPVVLKALLR*

mRNA from alignment at scaffold_1:1458566..1460503+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1766 ID=mRNA_1766|Name=jgi.p|Nanoce1779_2|16850|organism=Nannochloropsis oceanica|type=mRNA|length=1938bp|location=Sequence derived from alignment at scaffold_1:1458566..1460503+ (Nannochloropsis oceanica)
CACACACGCACGCATTATTCCATCTCTTTACTTTGATTCGTTCGTTCATC
TTCACACCATTCCTGTCCAAAGTAGTCCATTAGGTACTAATTCCATGCAC
GCGGGTCGCATCCTTTCCATCTCTGTGCCCAATGGTAGTAGCGTGCCGGA
CGTCTCCTTTTCCTTCCATCATCAACGGCAGCAGCAGCAACAGCAACAGC
AACAACAGGAAAGCCGGGCGGAGGAGCAGGAGGAGACAGTGCGATGCCAC
CAAAGCCGAAATGAGTCCTCGTTGACGGCTGGGAGGGTATTGTCCGCTTC
CTCTTTCGTGATGGAAAAGGGGCGGGGTGACAAGAATGAAGCAGGAGTAG
GTGGGGCAGGGAAGGCAAGGGGAGGGATACCTCGCTTGGGACAGTCACCC
AATGCCGAAGATGATGCGGCACTTGTTCGTCTCCTCGCAGGGCTTCAAAG
GGAGGCTGATTACCTCACAAACAGGCACAGTACTAGCAGCAGTAGCAGCA
GCAGCTGTGGTGATAGCCCTTTCATCACACCAGTGGGATCCCACCACTTC
CAAGGCGCCCATCTGGAAGCCTTGGAAGCCCTCCTTGAGTCCAATGAAGG
CACCGACATCGAACTCCACCCCTCCTTCCGCCCTTCCTCCTCCTCCTCCT
TCACTCCCTCCTCCTATCCCTCCTCCTCCACCACCGTCTTCCCCCCCCCA
TTGACCCTCCATTCCAAAATCACCCGTCACGGAACCCGCATCTTTCGACC
CAAAACCCGAGTCCAGGTTCCCTGGTCCTACCCCGTCACACATGCCCTCG
CCACCTTCCTCTATACGGGCCGCCTCGTCGTCTCCACTGCCCACCTGGCC
GACACCTACCGCGCCGCGCAAGAGGCTGGGGTACGGTCTTTGGCCTACCT
CCTACGCACGCATCCTTTCTACGCCTTGCGCTTGACGAGTGCCGAAAAAG
CGAGGTGAGGATGGAGAGGGAAAGAGGCGGAGGGGAAGGAGAAGACATCG
GTCGTGTGTATTAAAGAGTGTGTATGTGCTTAAGCATGCATCTTGGATTT
CTTTAATACGTCCTCTCACTCCCCCCCGTTCCCTTCCCTCGATCCCTCCC
TCCCTCGATCCCTCCCCCTCTCCCTCCAGCCACGTTCGCCGCTTCGCCGT
GGTTGCCGGGAACGAAAGGCTCAGTGCCCTCTGCGATGCTTACACGCGCC
GGCTGGCCTCCCATAAAACCACATACACGCTGGTGGCCCCTGTGCCTTTT
GCCTGGCTTCGGGCCCGCCCGCTTTTGATAGGGGACAAGGTCAGGGAAGG
AGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAG
GGTGGTTCTTGTTACCGTGCTGTAAACAAGCGCATCGTTATTGATTCATC
CTCCCCTCCCTTCCCTCCCTCCCACCGCCAGTCCCTCCTCCTCGCGTTCA
GCCACCGCCCTTCCCCCGTCCACGAAACGTCCAGCAATATCGTCCTCTCC
ATACAAGATCACCTCCCCTCTTCCTCGCCCCCCTCCTCCCTCCCGCTTTC
TCTTTGTCACAACACCTGCCTCCGCCTCGACAAGGACCCTTCCACCCCCT
GGTCCCCGACCTGGTTCGCCTCCTCGTCTCCTCTCCCTCCCTCCCCCTCA
CCCGCCTGTATGGAGGGTGACAAAAACGGACTTGTGTGGCTTTACGTCTT
ATGCTCTCAGGCACATGCACCGGTCGTGCTCAAGGCGCTCCTCAGGTAGG
GGAAAGGAGGGTATGAGGGAGAGAGGGAGGAAAGAGACAGACTGAAGGAG
ACTTAATTAATCCATGAGAGGGGAGAAGAAAGAGCGAACAGCCTAGCTAC
ATGTCTGTACGTATGTGTACTTATTCATGCAAGTCTTAACAGGGAGCTAA
GCGTGTCCAAGGCACTGTGCGACGCCGAGCCCCAGGCA

Coding sequence (CDS) from alignment at scaffold_1:1458566..1460503+

>mRNA_1766 ID=mRNA_1766|Name=jgi.p|Nanoce1779_2|16850|organism=Nannochloropsis oceanica|type=CDS|length=4014bp|location=Sequence derived from alignment at scaffold_1:1458566..1460503+ (Nannochloropsis oceanica)
ATGCACGCGGGTCGCATCCTTTCCATCTCTGTGCCCAATGGTAGTAGCGT
GCCGGACGTCTCCTTTTCCTTCCATCATCAACGGCAGCAGCAGCAACAGC
AACAGCAACAACAGGAAAGCCGGGCGGAGGAGCAGGAGGAGACAGTGCGA
TGCCACCAAAGCCGAAATGAGTCCTCGTTGACGGCTGGGAGGGTATTGTC
CGCTTCCTCTTTCGTGATGGAAAAGGGGCGGGGTGACAAGAATGAAGCAG
GAGTAGGTGGGGCAGGGAAGGCAAGGGGAGGGATACCTCGCTTGGGACAG
TCACCCAATGCCGAAGATGATGCGGCACTTGTTCGTCTCCTCGCAGGGCT
TCAAAGGGAGGCTGATTACCTCACAAACAGGCACAGTACTAGCAGCAGTA
GCAGCAGCAGCTGTGGTGATAGCCCTTTCATCACACCAGTGGGATCCCAC
CACTTCCAAGGCGCCCATCTGGAAGCCTTGGAAGCCCTCCTTGAGTCCAA
TGAAGGCACCGACATCGAACTCCACCCCTCCTTCCGCCCTTCCTCCTCCT
CCTCCTTCACTCCCTCCTCCTATCCCTCCTCCTCCACCACCGTCTTCCCC
CCCCCATTGACCCTCCATTCCAAAATCACCCGTCACGGAACCCGCATCTT
TCGACCCAAAACCCGAGTCCAGGTTCCCTGGTCCTACCCCGTCACACATG
CCCTCGCCACCTTCCTCTATACGGGCCGCCTCGTCGTCTCCACTGCCCAC
CTGGCCGACACCTACCGCGCCGCGCAAGAGGCTGGGGTACGGTCTTTGGC
CTACCTCCTACGCACGCATCCTTTCTACGCCTTGCGCTTGACGAGTGCCG
AAAAAGCGAGCCACGTTCGCCGCTTCGCCGTGGTTGCCGGGAACGAAAGG
CTCAGTGCCCTCTGCGATGCTTACACGCGCCGGCTGGCCTCCCATAAAAC
CACATACACGCTGGTGGCCCCTGTGCCTTTTGCCTGGCTTCGGGCCCGCC
CGCTTTTGATAGGGGACAAGTCCCTCCTCCTCGCGTTCAGCCACCGCCCT
TCCCCCGTCCACGAAACGTCCAGCAATATCGTCCTCTCCATACAAGATCA
CCTCCCCTCTTCCTCGCCCCCCTCCTCCCTCCCGCTTTCTCTTTGTCACA
ACACCTGCCTCCGCCTCGACAAGGACCCTTCCACCCCCTGGTCCCCGACC
TGGTTCGCCTCCTCGTCTCCTCTCCCTCCCTCCCCCTCACCCGCCTGTAT
GGAGGGTGACAAAAACGGACTTGTGTGGCTTTACGTCTTATGCTCTCAGG
CACATGCACCGGTCGTGCTCAAGGCGCTCCTCAGGTAGATGCACGCGGGT
CGCATCCTTTCCATCTCTGTGCCCAATGGTAGTAGCGTGCCGGACGTCTC
CTTTTCCTTCCATCATCAACGGCAGCAGCAGCAACAGCAACAGCAACAAC
AGGAAAGCCGGGCGGAGGAGCAGGAGGAGACAGTGCGATGCCACCAAAGC
CGAAATGAGTCCTCGTTGACGGCTGGGAGGGTATTGTCCGCTTCCTCTTT
CGTGATGGAAAAGGGGCGGGGTGACAAGAATGAAGCAGGAGTAGGTGGGG
CAGGGAAGGCAAGGGGAGGGATACCTCGCTTGGGACAGTCACCCAATGCC
GAAGATGATGCGGCACTTGTTCGTCTCCTCGCAGGGCTTCAAAGGGAGGC
TGATTACCTCACAAACAGGCACAGTACTAGCAGCAGTAGCAGCAGCAGCT
GTGGTGATAGCCCTTTCATCACACCAGTGGGATCCCACCACTTCCAAGGC
GCCCATCTGGAAGCCTTGGAAGCCCTCCTTGAGTCCAATGAAGGCACCGA
CATCGAACTCCACCCCTCCTTCCGCCCTTCCTCCTCCTCCTCCTTCACTC
CCTCCTCCTATCCCTCCTCCTCCACCACCGTCTTCCCCCCCCCATTGACC
CTCCATTCCAAAATCACCCGTCACGGAACCCGCATCTTTCGACCCAAAAC
CCGAGTCCAGGTTCCCTGGTCCTACCCCGTCACACATGCCCTCGCCACCT
TCCTCTATACGGGCCGCCTCGTCGTCTCCACTGCCCACCTGGCCGACACC
TACCGCGCCGCGCAAGAGGCTGGGGTACGGTCTTTGGCCTACCTCCTACG
CACGCATCCTTTCTACGCCTTGCGCTTGACGAGTGCCGAAAAAGCGAGCC
ACGTTCGCCGCTTCGCCGTGGTTGCCGGGAACGAAAGGCTCAGTGCCCTC
TGCGATGCTTACACGCGCCGGCTGGCCTCCCATAAAACCACATACACGCT
GGTGGCCCCTGTGCCTTTTGCCTGGCTTCGGGCCCGCCCGCTTTTGATAG
GGGACAAGTCCCTCCTCCTCGCGTTCAGCCACCGCCCTTCCCCCGTCCAC
GAAACGTCCAGCAATATCGTCCTCTCCATACAAGATCACCTCCCCTCTTC
CTCGCCCCCCTCCTCCCTCCCGCTTTCTCTTTGTCACAACACCTGCCTCC
GCCTCGACAAGGACCCTTCCACCCCCTGGTCCCCGACCTGGTTCGCCTCC
TCGTCTCCTCTCCCTCCCTCCCCCTCACCCGCCTGTATGGAGGGTGACAA
AAACGGACTTGTGTGGCTTTACGTCTTATGCTCTCAGGCACATGCACCGG
TCGTGCTCAAGGCGCTCCTCAGGTAGATGCACGCGGGTCGCATCCTTTCC
ATCTCTGTGCCCAATGGTAGTAGCGTGCCGGACGTCTCCTTTTCCTTCCA
TCATCAACGGCAGCAGCAGCAACAGCAACAGCAACAACAGGAAAGCCGGG
CGGAGGAGCAGGAGGAGACAGTGCGATGCCACCAAAGCCGAAATGAGTCC
TCGTTGACGGCTGGGAGGGTATTGTCCGCTTCCTCTTTCGTGATGGAAAA
GGGGCGGGGTGACAAGAATGAAGCAGGAGTAGGTGGGGCAGGGAAGGCAA
GGGGAGGGATACCTCGCTTGGGACAGTCACCCAATGCCGAAGATGATGCG
GCACTTGTTCGTCTCCTCGCAGGGCTTCAAAGGGAGGCTGATTACCTCAC
AAACAGGCACAGTACTAGCAGCAGTAGCAGCAGCAGCTGTGGTGATAGCC
CTTTCATCACACCAGTGGGATCCCACCACTTCCAAGGCGCCCATCTGGAA
GCCTTGGAAGCCCTCCTTGAGTCCAATGAAGGCACCGACATCGAACTCCA
CCCCTCCTTCCGCCCTTCCTCCTCCTCCTCCTTCACTCCCTCCTCCTATC
CCTCCTCCTCCACCACCGTCTTCCCCCCCCCATTGACCCTCCATTCCAAA
ATCACCCGTCACGGAACCCGCATCTTTCGACCCAAAACCCGAGTCCAGGT
TCCCTGGTCCTACCCCGTCACACATGCCCTCGCCACCTTCCTCTATACGG
GCCGCCTCGTCGTCTCCACTGCCCACCTGGCCGACACCTACCGCGCCGCG
CAAGAGGCTGGGGTACGGTCTTTGGCCTACCTCCTACGCACGCATCCTTT
CTACGCCTTGCGCTTGACGAGTGCCGAAAAAGCGAGCCACGTTCGCCGCT
TCGCCGTGGTTGCCGGGAACGAAAGGCTCAGTGCCCTCTGCGATGCTTAC
ACGCGCCGGCTGGCCTCCCATAAAACCACATACACGCTGGTGGCCCCTGT
GCCTTTTGCCTGGCTTCGGGCCCGCCCGCTTTTGATAGGGGACAAGTCCC
TCCTCCTCGCGTTCAGCCACCGCCCTTCCCCCGTCCACGAAACGTCCAGC
AATATCGTCCTCTCCATACAAGATCACCTCCCCTCTTCCTCGCCCCCCTC
CTCCCTCCCGCTTTCTCTTTGTCACAACACCTGCCTCCGCCTCGACAAGG
ACCCTTCCACCCCCTGGTCCCCGACCTGGTTCGCCTCCTCGTCTCCTCTC
CCTCCCTCCCCCTCACCCGCCTGTATGGAGGGTGACAAAAACGGACTTGT
GTGGCTTTACGTCTTATGCTCTCAGGCACATGCACCGGTCGTGCTCAAGG
CGCTCCTCAGGTAG

Synonyms

Publications