jgi.p|Nanoce1779_2|16811, mRNA_1765 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|16811
Unique Name	mRNA_1765
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	979
Alignment location	scaffold_1:1456479..1458170 -

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Properties


Property Name	Value
TranscriptId	16897
Track	FilteredModels2
ProteinId	16811

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:1456479..1458170 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|16811	gene_1765	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|16811	mRNA_1765-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1765	CDS_1765	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:1456479..1458170-
coding sequence from alignment at scaffold_1:1456479..1458170-

mRNA sequence

>mRNA_1765 ID=mRNA_1765|Name=jgi.p|Nanoce1779_2|16811|organism=Nannochloropsis oceanica|type=mRNA|length=979bp
GCACGCCATTACTGAACTCAGTCGGTCCGACATTCCCACAGGAAAGGAAA
AGATGTCGCCAAACCTACCACCGCCTCTAAGTCGCCGTCTGCCTGCACCC
TTGGCCCGGGTTCGTCGTTATATTGAGGAATCATGGGAAAGTGTGCGTCC
CATGGACAATCCTCCTGGCTACGATGAGGCGCACGGTATTTCCACCAAGG
AGAAGGCAGGGAACAAGCGATGGCGTAACCCTGTCGAACACGCCCGCGTC
TGGCAACGAGCCTTTCAAGCCTGGCGCAATTCTTTCGACTACGATACCTT
TAGGAGGGAGGGAGGACTAGGCCGGGGGTTGGTGCGGGGGAAGGCGGGAG
ACGACGCAGATGCTGTGTTGAGGAATGGGTGGACTCCTGAGGCGACTAGC
GCGACCTTGATGGAGGAGAAAAAGAAGGAGATGGAAGTGTTTGTGAAGGA
GAGAATGAGAGACGTAAAGCTGCAACTGAGTGAGGAGGAGATCAAGGCCG
AGGTGGAGACTCTTAGGAAGGAATGGACGGAGGGGAAGCACCAGTTGGAG
GAAGTTGCCACGGATAGGATGGAGCTGCTACGGATAACCGTCCGGGAGTT
CGTGGCGGGGTACAAGGAAGGCCGAGACCACAGCGCGGAGGAAGTGCAGG
CGGCCATCGAGAAGCAGATGGCGGCCTTCAGATCGTTAGTATTAGAGGGG
GAATGGACGGCCGAGGCAGTTGAAGAGTAAGTGCTTGCGTGTCTTGTTGG
TGTGATGTGATGCGCCCTCTCCCTCCTTCCCTCCCTCCCTCTCTCCTTTC
CTCCCTCCTCTTGCTGGTGTGAGTTGACCCTTTGTGATATGCCTTTAATC
CCTCTTCCTTGTCTCCTCTGTCCCTCTGTCCCTCTGTCCCTTTGTCCCTC
TATCCCTCCCTCCCTCCCTCCCTCATCCCCTCCCCGCCCTATAAGCATCA
GCTCCCAACCCACACACATACTCTCCCTC

protein sequence of jgi.p|Nanoce1779_2|16811

>mRNA_1765-protein ID=mRNA_1765-protein|Name=jgi.p|Nanoce1779_2|16811|organism=Nannochloropsis oceanica|type=polypeptide|length=226bp
MSPNLPPPLSRRLPAPLARVRRYIEESWESVRPMDNPPGYDEAHGISTKE
KAGNKRWRNPVEHARVWQRAFQAWRNSFDYDTFRREGGLGRGLVRGKAGD
DADAVLRNGWTPEATSATLMEEKKKEMEVFVKERMRDVKLQLSEEEIKAE
VETLRKEWTEGKHQLEEVATDRMELLRITVREFVAGYKEGRDHSAEEVQA
AIEKQMAAFRSLVLEGEWTAEAVEE*

mRNA from alignment at scaffold_1:1456479..1458170-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1765 ID=mRNA_1765|Name=jgi.p|Nanoce1779_2|16811|organism=Nannochloropsis oceanica|type=mRNA|length=1692bp|location=Sequence derived from alignment at scaffold_1:1456479..1458170- (Nannochloropsis oceanica)
GCACGCCATTACTGAACTCAGTCGGTCCGACATTCCCACAGGAAAGGAAA
AGATGTCGCCAAACCTACCACCGCCTCTAAGTCGCCGTCTGCCTGCACCC
TTGGCCCGGGTTCGTCGGTAAGTTTTGTGGAGGGTGGGGTGTGGTGTCGG
TTGTTTTTGCTCACCGTTCCAGCAAGCAACAGCCTCTCTCTCCCCTTCTA
CATCACATCCGTATCAACCGCTCCCTCCCTCCTTGCCCTTCTCCTTCTTC
CCTCCCTCCGTTCTAGTTATATTGAGGAATCATGGGAAAGTGTGCGTCCC
ATGGACAATCCTCCTGGCTACGATGAGGCGCACGGTATTTCCACCAAGGA
GAAGGCAGGGAACAAGCGATGGTATGGACCCCTGGTGTGCGTGCCCGTAT
GCATGGCCGTTGGTTACCCTTCCTTCCCCCTTCATTTTGTCCCAGGCCCT
ACGAATGACAGATTACCTTACCTTAGACCAACAATCCCCCTACCCCCCTT
TTCCCCCTATCCCCCCTAATTTTTCTTACTTCCGCTCTTCTCTCCCATCC
CTCCTCCCTCCCTCCTCCGACTTCTCCATGCCCAAATTACAACAGGCGTA
ACCCTGTCGAACACGCCCGCGTCTGGCAACGAGCCTTTCAAGCCTGGCGC
AATTCTTTCGACTACGATACCTTTAGGAGGGAGGGAGGACTAGGCCGGGG
GTTGGTGCGGGGGAAGGCGGGAGACGACGCAGATGCTGTGTTGAGGAATG
GGTGGACTCCTGAGGCGACTAGCGCGACCTTGATGGAGGAGAAAAAGAAG
GAGATGGAAGTGTTTGTGAAGGAGAGAATGAGAGACGTAAAGCTGCAACT
GAGTGAGGAGGAGATCAAGGCCGAGGTGGAGACTCTTAGGAAGGAATGGA
CGGAGGGGAAGCACCAGTTGGAGGAAGTTGCCACGGATAGGATGGAGCTG
GTGAGGAGGAAGGGAGGGAGGGAGGGAGGGAGAGAGAGGAGGGAGAAAGG
GCTAGAGAAGGGCTGAAGCGGCAGTGTGTGCACTGGAGAGACGAAAATAA
CCCTAACCCAAACCTTCTTGTAGTCCGTCTGTTCAGAGTTAAGTATGACT
CCGTCTCTCTTCTCATTCCCTCACTATCACCCCTTTTCCTGCCGCCCTCC
CTTCCTCTCTCCCTCCTTCCTCTTCTTCGCCTCCCCCGTAGCTACGGATA
ACCGTCCGGGAGTTCGTGGCGGGGTACAAGGAAGGCCGAGACCACAGCGC
GGAGGAAGTGCAGGCGGCCATCGAGAAGCAGGTAGAGGGGGAGGGAGGGA
GGGAGGGAAGGAGGGAAGAGGTCGAGCCAGCCAGTACTAAAGCGGGTCCT
TCTATCTCCTTTTTCCACATGCAATTACAGATGGCGGCCTTCAGATCGTT
AGTATTAGAGGGGGAATGGACGGCCGAGGCAGTTGAAGAGTAAGTGCTTG
CGTGTCTTGTTGGTGTGATGTGATGCGCCCTCTCCCTCCTTCCCTCCCTC
CCTCTCTCCTTTCCTCCCTCCTCTTGCTGGTGTGAGTTGACCCTTTGTGA
TATGCCTTTAATCCCTCTTCCTTGTCTCCTCTGTCCCTCTGTCCCTCTGT
CCCTTTGTCCCTCTATCCCTCCCTCCCTCCCTCCCTCATCCCCTCCCCGC
CCTATAAGCATCAGCTCCCAACCCACACACATACTCTCCCTC

Coding sequence (CDS) from alignment at scaffold_1:1456479..1458170-

>mRNA_1765 ID=mRNA_1765|Name=jgi.p|Nanoce1779_2|16811|organism=Nannochloropsis oceanica|type=CDS|length=3390bp|location=Sequence derived from alignment at scaffold_1:1456479..1458170- (Nannochloropsis oceanica)
ATGGCGGCCTTCAGATCGTTAGTATTAGAGGGGGAATGGACGGCCGAGGC
AGTTGAAGAGTAACTACGGATAACCGTCCGGGAGTTCGTGGCGGGGTACA
AGGAAGGCCGAGACCACAGCGCGGAGGAAGTGCAGGCGGCCATCGAGAAG
CAGGCGTAACCCTGTCGAACACGCCCGCGTCTGGCAACGAGCCTTTCAAG
CCTGGCGCAATTCTTTCGACTACGATACCTTTAGGAGGGAGGGAGGACTA
GGCCGGGGGTTGGTGCGGGGGAAGGCGGGAGACGACGCAGATGCTGTGTT
GAGGAATGGGTGGACTCCTGAGGCGACTAGCGCGACCTTGATGGAGGAGA
AAAAGAAGGAGATGGAAGTGTTTGTGAAGGAGAGAATGAGAGACGTAAAG
CTGCAACTGAGTGAGGAGGAGATCAAGGCCGAGGTGGAGACTCTTAGGAA
GGAATGGACGGAGGGGAAGCACCAGTTGGAGGAAGTTGCCACGGATAGGA
TGGAGCTGTTATATTGAGGAATCATGGGAAAGTGTGCGTCCCATGGACAA
TCCTCCTGGCTACGATGAGGCGCACGGTATTTCCACCAAGGAGAAGGCAG
GGAACAAGCGATGATGTCGCCAAACCTACCACCGCCTCTAAGTCGCCGTC
TGCCTGCACCCTTGGCCCGGGTTCGTCGATGGCGGCCTTCAGATCGTTAG
TATTAGAGGGGGAATGGACGGCCGAGGCAGTTGAAGAGTAACTACGGATA
ACCGTCCGGGAGTTCGTGGCGGGGTACAAGGAAGGCCGAGACCACAGCGC
GGAGGAAGTGCAGGCGGCCATCGAGAAGCAGGCGTAACCCTGTCGAACAC
GCCCGCGTCTGGCAACGAGCCTTTCAAGCCTGGCGCAATTCTTTCGACTA
CGATACCTTTAGGAGGGAGGGAGGACTAGGCCGGGGGTTGGTGCGGGGGA
AGGCGGGAGACGACGCAGATGCTGTGTTGAGGAATGGGTGGACTCCTGAG
GCGACTAGCGCGACCTTGATGGAGGAGAAAAAGAAGGAGATGGAAGTGTT
TGTGAAGGAGAGAATGAGAGACGTAAAGCTGCAACTGAGTGAGGAGGAGA
TCAAGGCCGAGGTGGAGACTCTTAGGAAGGAATGGACGGAGGGGAAGCAC
CAGTTGGAGGAAGTTGCCACGGATAGGATGGAGCTGTTATATTGAGGAAT
CATGGGAAAGTGTGCGTCCCATGGACAATCCTCCTGGCTACGATGAGGCG
CACGGTATTTCCACCAAGGAGAAGGCAGGGAACAAGCGATGATGTCGCCA
AACCTACCACCGCCTCTAAGTCGCCGTCTGCCTGCACCCTTGGCCCGGGT
TCGTCGATGGCGGCCTTCAGATCGTTAGTATTAGAGGGGGAATGGACGGC
CGAGGCAGTTGAAGAGTAACTACGGATAACCGTCCGGGAGTTCGTGGCGG
GGTACAAGGAAGGCCGAGACCACAGCGCGGAGGAAGTGCAGGCGGCCATC
GAGAAGCAGGCGTAACCCTGTCGAACACGCCCGCGTCTGGCAACGAGCCT
TTCAAGCCTGGCGCAATTCTTTCGACTACGATACCTTTAGGAGGGAGGGA
GGACTAGGCCGGGGGTTGGTGCGGGGGAAGGCGGGAGACGACGCAGATGC
TGTGTTGAGGAATGGGTGGACTCCTGAGGCGACTAGCGCGACCTTGATGG
AGGAGAAAAAGAAGGAGATGGAAGTGTTTGTGAAGGAGAGAATGAGAGAC
GTAAAGCTGCAACTGAGTGAGGAGGAGATCAAGGCCGAGGTGGAGACTCT
TAGGAAGGAATGGACGGAGGGGAAGCACCAGTTGGAGGAAGTTGCCACGG
ATAGGATGGAGCTGTTATATTGAGGAATCATGGGAAAGTGTGCGTCCCAT
GGACAATCCTCCTGGCTACGATGAGGCGCACGGTATTTCCACCAAGGAGA
AGGCAGGGAACAAGCGATGATGTCGCCAAACCTACCACCGCCTCTAAGTC
GCCGTCTGCCTGCACCCTTGGCCCGGGTTCGTCGATGGCGGCCTTCAGAT
CGTTAGTATTAGAGGGGGAATGGACGGCCGAGGCAGTTGAAGAGTAACTA
CGGATAACCGTCCGGGAGTTCGTGGCGGGGTACAAGGAAGGCCGAGACCA
CAGCGCGGAGGAAGTGCAGGCGGCCATCGAGAAGCAGGCGTAACCCTGTC
GAACACGCCCGCGTCTGGCAACGAGCCTTTCAAGCCTGGCGCAATTCTTT
CGACTACGATACCTTTAGGAGGGAGGGAGGACTAGGCCGGGGGTTGGTGC
GGGGGAAGGCGGGAGACGACGCAGATGCTGTGTTGAGGAATGGGTGGACT
CCTGAGGCGACTAGCGCGACCTTGATGGAGGAGAAAAAGAAGGAGATGGA
AGTGTTTGTGAAGGAGAGAATGAGAGACGTAAAGCTGCAACTGAGTGAGG
AGGAGATCAAGGCCGAGGTGGAGACTCTTAGGAAGGAATGGACGGAGGGG
AAGCACCAGTTGGAGGAAGTTGCCACGGATAGGATGGAGCTGTTATATTG
AGGAATCATGGGAAAGTGTGCGTCCCATGGACAATCCTCCTGGCTACGAT
GAGGCGCACGGTATTTCCACCAAGGAGAAGGCAGGGAACAAGCGATGATG
TCGCCAAACCTACCACCGCCTCTAAGTCGCCGTCTGCCTGCACCCTTGGC
CCGGGTTCGTCGATGGCGGCCTTCAGATCGTTAGTATTAGAGGGGGAATG
GACGGCCGAGGCAGTTGAAGAGTAACTACGGATAACCGTCCGGGAGTTCG
TGGCGGGGTACAAGGAAGGCCGAGACCACAGCGCGGAGGAAGTGCAGGCG
GCCATCGAGAAGCAGGCGTAACCCTGTCGAACACGCCCGCGTCTGGCAAC
GAGCCTTTCAAGCCTGGCGCAATTCTTTCGACTACGATACCTTTAGGAGG
GAGGGAGGACTAGGCCGGGGGTTGGTGCGGGGGAAGGCGGGAGACGACGC
AGATGCTGTGTTGAGGAATGGGTGGACTCCTGAGGCGACTAGCGCGACCT
TGATGGAGGAGAAAAAGAAGGAGATGGAAGTGTTTGTGAAGGAGAGAATG
AGAGACGTAAAGCTGCAACTGAGTGAGGAGGAGATCAAGGCCGAGGTGGA
GACTCTTAGGAAGGAATGGACGGAGGGGAAGCACCAGTTGGAGGAAGTTG
CCACGGATAGGATGGAGCTGTTATATTGAGGAATCATGGGAAAGTGTGCG
TCCCATGGACAATCCTCCTGGCTACGATGAGGCGCACGGTATTTCCACCA
AGGAGAAGGCAGGGAACAAGCGATGATGTCGCCAAACCTACCACCGCCTC
TAAGTCGCCGTCTGCCTGCACCCTTGGCCCGGGTTCGTCG

Synonyms

Publications