jgi.p|Nanoce1779_2|16742, mRNA_1764 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|16742
Unique NamemRNA_1764
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1350
Alignment locationscaffold_1:1453591..1454940 +

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Properties
Property NameValue
TranscriptId16828
TrackFilteredModels2
ProteinId16742
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:1453591..1454940 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|16742gene_1764Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|16742mRNA_1764-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1764CDS_1764Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1764 ID=mRNA_1764|Name=jgi.p|Nanoce1779_2|16742|organism=Nannochloropsis oceanica|type=mRNA|length=1350bp
TGCTTCTGAGACCGAGGCGCGGCAGATGATGGTAGTGATGATAAAGTATG
TCCGCCTTGCGGAATCCCACGCTATAAGCTGCTCATTCAAGCAAGGTAGC
TACCACCATCTATAGGACCTTGGTCAAGATGCGGGCTGTCTGTCAAATAG
GACAAACAAGTCTTATCTTATCCGGTCTCTTCCCTTCCATCATCACAGGG
CGTTGCCTTGCCCTCCTGTGCTTAACGAAAAGCGTATGGCTTCGTAAATC
GACCGTATCGTCAGCATCAGCACCGCAATTACTAGCAGCACCAGCAGCAA
TACCATCATCAACTGTAGGAAGAGGTGCAACAGGAACAGCCGACACAGCC
GCATCAAAATTATGCCGTCAATCCCGCTACCTACCCTTTCCAAGAAAGAC
GGCCGGGAGTACGCGGCATTCGACGGGGGTGAGACCAACCCCCACCCTCC
GACCCTGCCTCCTCCCCACTCTCCTCCTGACTCACCTGCCCACGCTCAAG
CCAGTGGCGGTGATAGCAGCAATGGTGGTAGCAGCGGTGGCAGGGCAGCA
GCCGCAGACATAGAAAGTGCAGATTTGAGTACATGTCCCGCAGACACACA
TGGGCGGCATGCTTTGAGTATTGGGGGCGGGGAGAACCCCTTTTGGAGAA
TAGGAGGAGCCGACGAAGGGCTAGATAGAGGGCGGGATGGAGGGAGGGGG
CGAGGGTGTTGCTGGCGGATGACAAGGCTCCAGGTGTTCTTTGTGGCAGT
GTTTGGGACCTGCAATCTGTTTTTAATAGCCGATGCGTTGGGAGAGCGTC
GCGTCCTGGCGTGGTTGGAAGGGGTGCTGGTACGTGAAAAATGGCGAGGA
AGGGAGGGAGGGAAGGGGAAAGAGAGAGGCAGGAAGCATGGTCTGCGCCG
AGCCGAAGTACGGTGTGCTCACCTTCCCTCCCATCCTCCATTCCTCAATC
CCCAGATCAATGCCCATCCCCATACCACGTCAGTAACGACGGGCTTGCTG
CTCTGCTTGGGCTTCGTATTGGTGTTTCTCGGTTTCCCTACTACCCTGCT
GGCAGTGCTTGCCGGGTACGTGTACAGGTACAAAGGGAGGGGGGAAAGTA
AAGAGCGAGAAAGCGAGGCAGGAAAATAGAGGTGGCTTGCCCGAACATGA
GCACGTGATAGCTTCAGAGGCAAGACATCCATTCGTCGCCCTTCGTCCTC
CCATGCCCCTTTCTTTCTTCCTCCGATATCAGCGATCTCCTCCCTGCCCT
CCTCCCTGCCCCCACCCTCGTCGGCTTTTTCAGTGATAACCCGTCCGGGT
GCCGTCTGGTTTCTTATAGGACGCATACCATGCACAGCTCACCTTCCCTC
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protein sequence of jgi.p|Nanoce1779_2|16742

>mRNA_1764-protein ID=mRNA_1764-protein|Name=jgi.p|Nanoce1779_2|16742|organism=Nannochloropsis oceanica|type=polypeptide|length=256bp
MPSIPLPTLSKKDGREYAAFDGGETNPHPPTLPPPHSPPDSPAHAQASGG
DSSNGGSSGGRAAAADIESADLSTCPADTHGRHALSIGGGENPFWRIGGA
DEGLDRGRDGGRGRGCCWRMTRLQVFFVAVFGTCNLFLIADALGERRVLA
WLEGVLVREKWRGREGGKGKERGRKHGLRRAEVRCAHLPSHPPFLNPQIN
AHPHTTSVTTGLLLCLGFVLVFLGFPTTLLAVLAGYVYRYKGRGESKERE
SEAGK*
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mRNA from alignment at scaffold_1:1453591..1454940+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1764 ID=mRNA_1764|Name=jgi.p|Nanoce1779_2|16742|organism=Nannochloropsis oceanica|type=mRNA|length=1350bp|location=Sequence derived from alignment at scaffold_1:1453591..1454940+ (Nannochloropsis oceanica)
TGCTTCTGAGACCGAGGCGCGGCAGATGATGGTAGTGATGATAAAGTATG
TCCGCCTTGCGGAATCCCACGCTATAAGCTGCTCATTCAAGCAAGGTAGC
TACCACCATCTATAGGACCTTGGTCAAGATGCGGGCTGTCTGTCAAATAG
GACAAACAAGTCTTATCTTATCCGGTCTCTTCCCTTCCATCATCACAGGG
CGTTGCCTTGCCCTCCTGTGCTTAACGAAAAGCGTATGGCTTCGTAAATC
GACCGTATCGTCAGCATCAGCACCGCAATTACTAGCAGCACCAGCAGCAA
TACCATCATCAACTGTAGGAAGAGGTGCAACAGGAACAGCCGACACAGCC
GCATCAAAATTATGCCGTCAATCCCGCTACCTACCCTTTCCAAGAAAGAC
GGCCGGGAGTACGCGGCATTCGACGGGGGTGAGACCAACCCCCACCCTCC
GACCCTGCCTCCTCCCCACTCTCCTCCTGACTCACCTGCCCACGCTCAAG
CCAGTGGCGGTGATAGCAGCAATGGTGGTAGCAGCGGTGGCAGGGCAGCA
GCCGCAGACATAGAAAGTGCAGATTTGAGTACATGTCCCGCAGACACACA
TGGGCGGCATGCTTTGAGTATTGGGGGCGGGGAGAACCCCTTTTGGAGAA
TAGGAGGAGCCGACGAAGGGCTAGATAGAGGGCGGGATGGAGGGAGGGGG
CGAGGGTGTTGCTGGCGGATGACAAGGCTCCAGGTGTTCTTTGTGGCAGT
GTTTGGGACCTGCAATCTGTTTTTAATAGCCGATGCGTTGGGAGAGCGTC
GCGTCCTGGCGTGGTTGGAAGGGGTGCTGGTACGTGAAAAATGGCGAGGA
AGGGAGGGAGGGAAGGGGAAAGAGAGAGGCAGGAAGCATGGTCTGCGCCG
AGCCGAAGTACGGTGTGCTCACCTTCCCTCCCATCCTCCATTCCTCAATC
CCCAGATCAATGCCCATCCCCATACCACGTCAGTAACGACGGGCTTGCTG
CTCTGCTTGGGCTTCGTATTGGTGTTTCTCGGTTTCCCTACTACCCTGCT
GGCAGTGCTTGCCGGGTACGTGTACAGGTACAAAGGGAGGGGGGAAAGTA
AAGAGCGAGAAAGCGAGGCAGGAAAATAGAGGTGGCTTGCCCGAACATGA
GCACGTGATAGCTTCAGAGGCAAGACATCCATTCGTCGCCCTTCGTCCTC
CCATGCCCCTTTCTTTCTTCCTCCGATATCAGCGATCTCCTCCCTGCCCT
CCTCCCTGCCCCCACCCTCGTCGGCTTTTTCAGTGATAACCCGTCCGGGT
GCCGTCTGGTTTCTTATAGGACGCATACCATGCACAGCTCACCTTCCCTC
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Coding sequence (CDS) from alignment at scaffold_1:1453591..1454940+

>mRNA_1764 ID=mRNA_1764|Name=jgi.p|Nanoce1779_2|16742|organism=Nannochloropsis oceanica|type=CDS|length=768bp|location=Sequence derived from alignment at scaffold_1:1453591..1454940+ (Nannochloropsis oceanica)
ATGCCGTCAATCCCGCTACCTACCCTTTCCAAGAAAGACGGCCGGGAGTA
CGCGGCATTCGACGGGGGTGAGACCAACCCCCACCCTCCGACCCTGCCTC
CTCCCCACTCTCCTCCTGACTCACCTGCCCACGCTCAAGCCAGTGGCGGT
GATAGCAGCAATGGTGGTAGCAGCGGTGGCAGGGCAGCAGCCGCAGACAT
AGAAAGTGCAGATTTGAGTACATGTCCCGCAGACACACATGGGCGGCATG
CTTTGAGTATTGGGGGCGGGGAGAACCCCTTTTGGAGAATAGGAGGAGCC
GACGAAGGGCTAGATAGAGGGCGGGATGGAGGGAGGGGGCGAGGGTGTTG
CTGGCGGATGACAAGGCTCCAGGTGTTCTTTGTGGCAGTGTTTGGGACCT
GCAATCTGTTTTTAATAGCCGATGCGTTGGGAGAGCGTCGCGTCCTGGCG
TGGTTGGAAGGGGTGCTGGTACGTGAAAAATGGCGAGGAAGGGAGGGAGG
GAAGGGGAAAGAGAGAGGCAGGAAGCATGGTCTGCGCCGAGCCGAAGTAC
GGTGTGCTCACCTTCCCTCCCATCCTCCATTCCTCAATCCCCAGATCAAT
GCCCATCCCCATACCACGTCAGTAACGACGGGCTTGCTGCTCTGCTTGGG
CTTCGTATTGGTGTTTCTCGGTTTCCCTACTACCCTGCTGGCAGTGCTTG
CCGGGTACGTGTACAGGTACAAAGGGAGGGGGGAAAGTAAAGAGCGAGAA
AGCGAGGCAGGAAAATAG
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Synonyms
Publications