jgi.p|Nanoce1779_2|16734, mRNA_1761 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|16734
Unique Name	mRNA_1761
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1711
Alignment location	scaffold_1:1446693..1448777 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	16820
Track	FilteredModels2
ProteinId	16734

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:1446693..1448777 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|16734	gene_1761	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|16734	mRNA_1761-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1761	CDS_1761	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:1446693..1448777-
coding sequence from alignment at scaffold_1:1446693..1448777-

mRNA sequence

>mRNA_1761 ID=mRNA_1761|Name=jgi.p|Nanoce1779_2|16734|organism=Nannochloropsis oceanica|type=mRNA|length=1711bp
GGAGGAGGAGGGCGCAATAGCTATCACTTTGGTCGGGGCGGAAGAAGGTG
GCGCAGGTGGGGGAAGTGGTGGTAGCGATGCTTTCTTGCACCTGTATAGG
CTGGCCTGCACGAGAATTTGAGCTGCTAAAAAATAATAATATGCGTAGGC
CTACCCGTGGCTACTTTCCCCTATCGATGGAGACGAGATGTAGCTGTCGA
AGTAAATCAAATGACTCCTACTTACATACCACGACATCCGTGCTCACACC
CCGTTCTTTATCCACCCTGCTCTCCCGTGCACCCTTCAGAGGCGGTGGCC
GTGGTTATCAAGGACGTGGCGGGCGTGGTGGCGACACATCCCAAGCAGGG
GCCAATGCGCCTTTTCAATGCAAGCACGTGTTGGACGGCTCGTGCACGTA
CGGCCCGTCCCGATGTCGATTTGTCCATGGCGTGGAGTTTCACACGAACG
GGGTGGACTTGGAAGCGCACGAGGGGGCGGTCAGGGGCCTAGCGAGCGAT
GCGAATTGTTTGTACACCTTTGGGGAGGACGGGGTAATCAAAACGTACAG
CTGGACGCCGGGCACAGGCATCACCGGATGCAAGCAGCAAACGGGTGGAG
GCCCGGGCACATTCTTTACTACCTCTGACCCCGCCCACACCTTTTACTTC
TACGGCTTTCAACAGCCTCTCTTCCCCGGCCTGCCCACCGGCGCCGAGTC
GGGGCTCGTGGGCCGTGCTCAAATGTTCTTCAATAACGCGTCGACCGACC
TGCTTATGTCCGAGGAGTGTCCTTACGCCGATCCAAGCAAAGTATTGGCC
TGCGTGGCCTGGGAGATGCCTGCGCCTCAACCCCCCCACATTTTCACCGC
CGGTGAAGACGGTCACATCCGCACCTGGTCTTTTCACGCGGATCAAGCAC
GATTCGTCGTCGGGAGCACATACGTTGGACATACCCGTGCAGTGACTGCG
CTCATTCTCGCGGCGACTGAGAACCCGCCCTTGCTCTACTCGGCAGGGCT
GGACGGAACGATCCGATGCTGGAATTGCGCGACGCACGCATCGGAGTGGA
CAAGCACGGCCGTGGGGGTCTTTCGTCGCCCGTCCGAGCCTGCGCAACAA
TCTCATGAGGGCCACCTGGAGGGAATCACGGACATGTGTTCTTTGGTATG
TGAGGGGCAGTCGTTCTTGGCCACGTGCAGCAAGGATGGAAGTGTGAGAA
TCTGGTCCATGCAGGGGGGGGGACTGGGCGTGACCATGCCGTTGGACTTC
CCAACGGGCGGAGCGTTGAAGCTGTGCCAAGTAACGGTCGGGCCTGAGGG
AGGAGGGTCTGGAGGGAACGAGCCGTCATCGGCGGGGTCGTCGTCCTTGT
TGGCAGTGGCGTATGAGAGCGGGCACTTGGTGTTTTGGACGCTGCCGGGG
CTGGAGACGTATTTGGTGGTAGACCCACCATATGCGGGAAAACCAGGGGG
CAGGTCGGGAGGGAGGGAAGGGGGTGGATCGTATGTCACGTCTCTGGTGA
CGTTGAGTCCGGGGATAGTGGCTACAGGGTCGTCGGATGGAGTGTTGAAG
GTGTGGATCGTGCACGCTCCGGGAGGGGGGTCGTCGTAGGGGTGAGGGAG
TCAAAGAGAGAGGGAAAGATGGGGAGAGTGCTCTTACCATCTCGAAGGGC
GGGGTAAAAGTGAGCTATGTGGATGCCTACAACAGCGGAGGTAAGAACAG
AGCAAGCAGAA

protein sequence of jgi.p|Nanoce1779_2|16734

>mRNA_1761-protein ID=mRNA_1761-protein|Name=jgi.p|Nanoce1779_2|16734|organism=Nannochloropsis oceanica|type=polypeptide|length=504bp
MLSCTCIGWPAREFELLKNNNMRRPTRGYFPLSMETRCSCRSKSNDSYLH
TTTSVLTPRSLSTLLSRAPFRGGGRGYQGRGGRGGDTSQAGANAPFQCKH
VLDGSCTYGPSRCRFVHGVEFHTNGVDLEAHEGAVRGLASDANCLYTFGE
DGVIKTYSWTPGTGITGCKQQTGGGPGTFFTTSDPAHTFYFYGFQQPLFP
GLPTGAESGLVGRAQMFFNNASTDLLMSEECPYADPSKVLACVAWEMPAP
QPPHIFTAGEDGHIRTWSFHADQARFVVGSTYVGHTRAVTALILAATENP
PLLYSAGLDGTIRCWNCATHASEWTSTAVGVFRRPSEPAQQSHEGHLEGI
TDMCSLVCEGQSFLATCSKDGSVRIWSMQGGGLGVTMPLDFPTGGALKLC
QVTVGPEGGGSGGNEPSSAGSSSLLAVAYESGHLVFWTLPGLETYLVVDP
PYAGKPGGRSGGREGGGSYVTSLVTLSPGIVATGSSDGVLKVWIVHAPGG
GSS*

mRNA from alignment at scaffold_1:1446693..1448777-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1761 ID=mRNA_1761|Name=jgi.p|Nanoce1779_2|16734|organism=Nannochloropsis oceanica|type=mRNA|length=2085bp|location=Sequence derived from alignment at scaffold_1:1446693..1448777- (Nannochloropsis oceanica)
GGAGGAGGAGGGCGCAATAGCTATCACTTTGGTCGGGGCGGAAGAAGGTA
CGTGTACCATATGGATCCATCTTGAGTGCTGTCATGTGCCAATGGTGCCA
TAGCTCGCCCTTCATGCCCTCTCTCTTTCATGTCCCTCCCTACTAATTGT
TCCACGCTCTTCCACTTGAATACCACCGCCGATGGTGCTGCAGGTGGCGC
AGGTGGGGGAAGTGGTGGTAGCGATGCTTTCTTGCACCTGTATAGGCTGG
CCTGCACGAGAATTTGAGCTGCTAAAAAATAATAATATGCGTAGGCCTAC
CCGTGGCTACTTTCCCCTATCGATGGAGACGAGATGTAGCTGTCGAAGTA
AATCAAATGACTCCTACTTACATACCACGACATCCGTGCTCACACCCCGT
TCTTTATCCACCCTGCTCTCCCGTGCACCCTTCAGAGGCGGTGGCCGTGG
TTATCAAGGACGTGGCGGGCGTGGTGGCGACACATCCCAAGCAGGGGCCA
ATGCGCCTTTTCAATGCAAGCACGTGTTGGACGGCTCGTGCACGTACGGC
CCGTCCCGATGTCGATTTGTCCATGGCGTGGAGTTTCACACGAACGGGGT
GGACTTGGAAGCGCACGAGGGGGCGGTCAGGGGCCTAGCGAGCGATGCGA
ATTGTTTGTACACCTTTGGGGAGGACGGGGTAATCAAAACGTACAGCTGG
ACGCCGGGTAAGGGATGCAGGGAGGGAGAGAGAGAGCAAGAGAAAGGGCA
CACATGAATCATAGAGACGAATTCTTTGCGTGGTAACAAGCAGGAAGATC
TTCTGCATTATAAAGTGCAGCTGAATCAACTTACTACTGGCCCTTCTCCC
TTTTTTCCAACGCCTACCGCGAGGAATTCACTCCCCCCTCCCTCTCCTCC
TCCCCCCTCGTGTTCCTTCCCCCCTTCCTCCTCAGGCACAGGCATCACCG
GATGCAAGCAGCAAACGGGTGGAGGCCCGGGCACATTCTTTACTACCTCT
GACCCCGCCCACACCTTTTACTTCTACGGCTTTCAACAGCCTCTCTTCCC
CGGCCTGCCCACCGGCGCCGAGTCGGGGCTCGTGGGCCGTGCTCAAATGT
TCTTCAATAACGCGTCGACCGACCTGCTTATGTCCGAGGAGTGTCCTTAC
GCCGATCCAAGCAAAGTATTGGCCTGCGTGGCCTGGGAGATGCCTGCGCC
TCAACCCCCCCACATTTTCACCGCCGGTGAAGACGGTCACATCCGCACCT
GGTCTTTTCACGCGGATCAAGCACGATTCGTCGTCGGGAGCACATACGTT
GGACATACCCGTGCAGTGACTGCGCTCATTCTCGCGGCGACTGAGAACCC
GCCCTTGCTCTACTCGGCAGGGCTGGACGGAACGATCCGATGCTGGAATT
GCGCGACGCACGCATCGGAGTGGACAAGCACGGCCGTGGGGGTCTTTCGT
CGCCCGTCCGAGCCTGCGCAACAATCTCATGAGGGCCACCTGGAGGGAAT
CACGGACATGTGTTCTTTGGTATGTGAGGGGCAGTCGTTCTTGGCCACGT
GCAGCAAGGATGGAAGTGTGAGAATCTGGTCCATGCAGGGGGGGGGACTG
GGCGTGACCATGCCGTTGGACTTCCCAACGGGCGGAGCGTTGAAGCTGTG
CCAAGTAACGGTCGGGCCTGAGGGAGGAGGGTCTGGAGGGAACGAGCCGT
CATCGGCGGGGTCGTCGTCCTTGTTGGCAGTGGCGTATGAGAGCGGGCAC
TTGGTGTTTTGGACGCTGCCGGGGCTGGAGACGTATTTGGTGGTAGACCC
ACCATATGCGGGAAAACCAGGGGGCAGGTCGGGAGGGAGGGAAGGGGGTG
GATCGTATGTCACGTCTCTGGTGACGTTGAGTCCGGGGATAGTGGCTACA
GGGTCGTCGGATGGAGTGTTGAAGGTGTGGATCGTGCACGCTCCGGGAGG
GGGGTCGTCGTAGGGGTGAGGGAGTCAAAGAGAGAGGGAAAGATGGGGAG
AGTGCTCTTACCATCTCGAAGGGCGGGGTAAAAGTGAGCTATGTGGATGC
CTACAACAGCGGAGGTAAGAACAGAGCAAGCAGAA

Coding sequence (CDS) from alignment at scaffold_1:1446693..1448777-

>mRNA_1761 ID=mRNA_1761|Name=jgi.p|Nanoce1779_2|16734|organism=Nannochloropsis oceanica|type=CDS|length=3024bp|location=Sequence derived from alignment at scaffold_1:1446693..1448777- (Nannochloropsis oceanica)
GCACAGGCATCACCGGATGCAAGCAGCAAACGGGTGGAGGCCCGGGCACA
TTCTTTACTACCTCTGACCCCGCCCACACCTTTTACTTCTACGGCTTTCA
ACAGCCTCTCTTCCCCGGCCTGCCCACCGGCGCCGAGTCGGGGCTCGTGG
GCCGTGCTCAAATGTTCTTCAATAACGCGTCGACCGACCTGCTTATGTCC
GAGGAGTGTCCTTACGCCGATCCAAGCAAAGTATTGGCCTGCGTGGCCTG
GGAGATGCCTGCGCCTCAACCCCCCCACATTTTCACCGCCGGTGAAGACG
GTCACATCCGCACCTGGTCTTTTCACGCGGATCAAGCACGATTCGTCGTC
GGGAGCACATACGTTGGACATACCCGTGCAGTGACTGCGCTCATTCTCGC
GGCGACTGAGAACCCGCCCTTGCTCTACTCGGCAGGGCTGGACGGAACGA
TCCGATGCTGGAATTGCGCGACGCACGCATCGGAGTGGACAAGCACGGCC
GTGGGGGTCTTTCGTCGCCCGTCCGAGCCTGCGCAACAATCTCATGAGGG
CCACCTGGAGGGAATCACGGACATGTGTTCTTTGGTATGTGAGGGGCAGT
CGTTCTTGGCCACGTGCAGCAAGGATGGAAGTGTGAGAATCTGGTCCATG
CAGGGGGGGGGACTGGGCGTGACCATGCCGTTGGACTTCCCAACGGGCGG
AGCGTTGAAGCTGTGCCAAGTAACGGTCGGGCCTGAGGGAGGAGGGTCTG
GAGGGAACGAGCCGTCATCGGCGGGGTCGTCGTCCTTGTTGGCAGTGGCG
TATGAGAGCGGGCACTTGGTGTTTTGGACGCTGCCGGGGCTGGAGACGTA
TTTGGTGGTAGACCCACCATATGCGGGAAAACCAGGGGGCAGGTCGGGAG
GGAGGGAAGGGGGTGGATCGTATGTCACGTCTCTGGTGACGTTGAGTCCG
GGGATAGTGGCTACAGGGTCGTCGGATGGAGTGTTGAAGGTGTGGATCGT
GCACGCTCCGGGAGGGGGGTCGTCGTAGATGCTTTCTTGCACCTGTATAG
GCTGGCCTGCACGAGAATTTGAGCTGCTAAAAAATAATAATATGCGTAGG
CCTACCCGTGGCTACTTTCCCCTATCGATGGAGACGAGATGTAGCTGTCG
AAGTAAATCAAATGACTCCTACTTACATACCACGACATCCGTGCTCACAC
CCCGTTCTTTATCCACCCTGCTCTCCCGTGCACCCTTCAGAGGCGGTGGC
CGTGGTTATCAAGGACGTGGCGGGCGTGGTGGCGACACATCCCAAGCAGG
GGCCAATGCGCCTTTTCAATGCAAGCACGTGTTGGACGGCTCGTGCACGT
ACGGCCCGTCCCGATGTCGATTTGTCCATGGCGTGGAGTTTCACACGAAC
GGGGTGGACTTGGAAGCGCACGAGGGGGCGGTCAGGGGCCTAGCGAGCGA
TGCGAATTGTTTGTACACCTTTGGGGAGGACGGGGTAATCAAAACGTACA
GCTGGACGCCGGGCACAGGCATCACCGGATGCAAGCAGCAAACGGGTGGA
GGCCCGGGCACATTCTTTACTACCTCTGACCCCGCCCACACCTTTTACTT
CTACGGCTTTCAACAGCCTCTCTTCCCCGGCCTGCCCACCGGCGCCGAGT
CGGGGCTCGTGGGCCGTGCTCAAATGTTCTTCAATAACGCGTCGACCGAC
CTGCTTATGTCCGAGGAGTGTCCTTACGCCGATCCAAGCAAAGTATTGGC
CTGCGTGGCCTGGGAGATGCCTGCGCCTCAACCCCCCCACATTTTCACCG
CCGGTGAAGACGGTCACATCCGCACCTGGTCTTTTCACGCGGATCAAGCA
CGATTCGTCGTCGGGAGCACATACGTTGGACATACCCGTGCAGTGACTGC
GCTCATTCTCGCGGCGACTGAGAACCCGCCCTTGCTCTACTCGGCAGGGC
TGGACGGAACGATCCGATGCTGGAATTGCGCGACGCACGCATCGGAGTGG
ACAAGCACGGCCGTGGGGGTCTTTCGTCGCCCGTCCGAGCCTGCGCAACA
ATCTCATGAGGGCCACCTGGAGGGAATCACGGACATGTGTTCTTTGGTAT
GTGAGGGGCAGTCGTTCTTGGCCACGTGCAGCAAGGATGGAAGTGTGAGA
ATCTGGTCCATGCAGGGGGGGGGACTGGGCGTGACCATGCCGTTGGACTT
CCCAACGGGCGGAGCGTTGAAGCTGTGCCAAGTAACGGTCGGGCCTGAGG
GAGGAGGGTCTGGAGGGAACGAGCCGTCATCGGCGGGGTCGTCGTCCTTG
TTGGCAGTGGCGTATGAGAGCGGGCACTTGGTGTTTTGGACGCTGCCGGG
GCTGGAGACGTATTTGGTGGTAGACCCACCATATGCGGGAAAACCAGGGG
GCAGGTCGGGAGGGAGGGAAGGGGGTGGATCGTATGTCACGTCTCTGGTG
ACGTTGAGTCCGGGGATAGTGGCTACAGGGTCGTCGGATGGAGTGTTGAA
GGTGTGGATCGTGCACGCTCCGGGAGGGGGGTCGTCGTAGATGCTTTCTT
GCACCTGTATAGGCTGGCCTGCACGAGAATTTGAGCTGCTAAAAAATAAT
AATATGCGTAGGCCTACCCGTGGCTACTTTCCCCTATCGATGGAGACGAG
ATGTAGCTGTCGAAGTAAATCAAATGACTCCTACTTACATACCACGACAT
CCGTGCTCACACCCCGTTCTTTATCCACCCTGCTCTCCCGTGCACCCTTC
AGAGGCGGTGGCCGTGGTTATCAAGGACGTGGCGGGCGTGGTGGCGACAC
ATCCCAAGCAGGGGCCAATGCGCCTTTTCAATGCAAGCACGTGTTGGACG
GCTCGTGCACGTACGGCCCGTCCCGATGTCGATTTGTCCATGGCGTGGAG
TTTCACACGAACGGGGTGGACTTGGAAGCGCACGAGGGGGCGGTCAGGGG
CCTAGCGAGCGATGCGAATTGTTTGTACACCTTTGGGGAGGACGGGGTAA
TCAAAACGTACAGCTGGACGCCGG

Synonyms

Publications