jgi.p|Nanoce1779_2|636572, mRNA_176 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|636572
Unique NamemRNA_176
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length579
Alignment locationscaffold_3:442087..442961 -

Link to JBrowse

Properties
Property NameValue
TranscriptId636658
TrackFilteredModels2
ProteinId636572
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:442087..442961 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|636572gene_176Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|636572mRNA_176-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_176CDS_176Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_176 ID=mRNA_176|Name=jgi.p|Nanoce1779_2|636572|organism=Nannochloropsis oceanica|type=mRNA|length=579bp
ATGAGCGATACGACGACTTCCTGCACGGTCGAAGTCGCTCCGGGGACAGC
AGAGTGCTTTGTCGCCGTGGCGACGGAAGGCGACGACTTCTTGGGTAATT
TTGAGGTGCTGACCGAGGGGAGTTACGCCCCAGTGGAAGTGACGGTGGAG
GGCCCAGACGGAAAGCAGTTGTGGCGCGCGGCGGATAAGAGCGAAGAGAC
GTTCTCGTTCGAGGCCAAGGCGAATGGGGATTATACTTTGTGCATTGGTA
ATGGTGCGAAGGGGCGGGTGGACGACGGGACGACCCGACTGGTGGGTTTT
TCGTTTCGGACTGACGTGTTCGTGGACGAGGATATTGCGAGCGAGGAGAG
CATTCGACGACTCATTGAACTTGGGAATTCGTTGACCAAGGGTTTGACGA
ACGTAATGGATCATCAGAGTTATATGCGGCAACGCGAGGATTTGCATGCA
TCAACCATGGAGAGCATTGGCTCTAGGGTTTTGATCTGGACGGTGGTGGA
GGCTGTGGTGTTGGTGGGTATGGCGGTTTGGCAGATCAGCATTATTAGCA
AGTTTTTTGAGGTGCGACGAGCAGTGTAA
back to top

protein sequence of jgi.p|Nanoce1779_2|636572

>mRNA_176-protein ID=mRNA_176-protein|Name=jgi.p|Nanoce1779_2|636572|organism=Nannochloropsis oceanica|type=polypeptide|length=193bp
MSDTTTSCTVEVAPGTAECFVAVATEGDDFLGNFEVLTEGSYAPVEVTVE
GPDGKQLWRAADKSEETFSFEAKANGDYTLCIGNGAKGRVDDGTTRLVGF
SFRTDVFVDEDIASEESIRRLIELGNSLTKGLTNVMDHQSYMRQREDLHA
STMESIGSRVLIWTVVEAVVLVGMAVWQISIISKFFEVRRAV*
back to top

mRNA from alignment at scaffold_3:442087..442961-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_176 ID=mRNA_176|Name=jgi.p|Nanoce1779_2|636572|organism=Nannochloropsis oceanica|type=mRNA|length=875bp|location=Sequence derived from alignment at scaffold_3:442087..442961- (Nannochloropsis oceanica)
ATGAGCGATACGACGACTTCCTGCACGGGTACCAAACCTGAAGGCATTCA
TCGAGACCCTCACGCTGGGCCACGAGGGGCATGCATTTCTCATGCGTCTG
TGAAAGTGTTCACTGCTGCTTACCAGTTCAATCACTCCTCACTTCCCCAC
ATCACTACCACGCAGCTACAGCAGTTAAAGCCATGGAGCGATTGCCACCA
TTACACTCACCAAGAATACCACAACGACGAGATGCTTCAAATGTATTACA
TTCCTTGGTCCTCTATCCCGCCACCTTCCTCCTTCTTCTTCTTCTCCTGC
CCCATTCCACCACGGCCTTCACAGTCGAAGTCGCTCCGGGGACAGCAGAG
TGCTTTGTCGCCGTGGCGACGGAAGGCGACGACTTCTTGGGTAATTTTGA
GGTGCTGACCGAGGGGAGTTACGCCCCAGTGGAAGTGACGGTGGAGGGCC
CAGACGGAAAGCAGTTGTGGCGCGCGGCGGATAAGAGCGAAGAGACGTTC
TCGTTCGAGGCCAAGGCGAATGGGGATTATACTTTGTGCATTGGTAATGG
TGCGAAGGGGCGGGTGGACGACGGGACGACCCGACTGGTGGGTTTTTCGT
TTCGGACTGACGTGTTCGTGGACGAGGATATTGCGAGCGAGGAGAGCATT
CGACGACTCATTGAACTTGGGAATTCGTTGACCAAGGGTTTGACGAACGT
AATGGATCATCAGAGTTATATGCGGCAACGCGAGGATTTGCATGCATCAA
CCATGGAGAGCATTGGCTCTAGGGTTTTGATCTGGACGGTGGTGGAGGCT
GTGGTGTTGGTGGGTATGGCGGTTTGGCAGATCAGCATTATTAGCAAGTT
TTTTGAGGTGCGACGAGCAGTGTAA
back to top

Coding sequence (CDS) from alignment at scaffold_3:442087..442961-

>mRNA_176 ID=mRNA_176|Name=jgi.p|Nanoce1779_2|636572|organism=Nannochloropsis oceanica|type=CDS|length=1158bp|location=Sequence derived from alignment at scaffold_3:442087..442961- (Nannochloropsis oceanica)
TCGAAGTCGCTCCGGGGACAGCAGAGTGCTTTGTCGCCGTGGCGACGGAA
GGCGACGACTTCTTGGGTAATTTTGAGGTGCTGACCGAGGGGAGTTACGC
CCCAGTGGAAGTGACGGTGGAGGGCCCAGACGGAAAGCAGTTGTGGCGCG
CGGCGGATAAGAGCGAAGAGACGTTCTCGTTCGAGGCCAAGGCGAATGGG
GATTATACTTTGTGCATTGGTAATGGTGCGAAGGGGCGGGTGGACGACGG
GACGACCCGACTGGTGGGTTTTTCGTTTCGGACTGACGTGTTCGTGGACG
AGGATATTGCGAGCGAGGAGAGCATTCGACGACTCATTGAACTTGGGAAT
TCGTTGACCAAGGGTTTGACGAACGTAATGGATCATCAGAGTTATATGCG
GCAACGCGAGGATTTGCATGCATCAACCATGGAGAGCATTGGCTCTAGGG
TTTTGATCTGGACGGTGGTGGAGGCTGTGGTGTTGGTGGGTATGGCGGTT
TGGCAGATCAGCATTATTAGCAAGTTTTTTGAGGTGCGACGAGCAGTGTA
AATGAGCGATACGACGACTTCCTGCACGGTCGAAGTCGCTCCGGGGACAG
CAGAGTGCTTTGTCGCCGTGGCGACGGAAGGCGACGACTTCTTGGGTAAT
TTTGAGGTGCTGACCGAGGGGAGTTACGCCCCAGTGGAAGTGACGGTGGA
GGGCCCAGACGGAAAGCAGTTGTGGCGCGCGGCGGATAAGAGCGAAGAGA
CGTTCTCGTTCGAGGCCAAGGCGAATGGGGATTATACTTTGTGCATTGGT
AATGGTGCGAAGGGGCGGGTGGACGACGGGACGACCCGACTGGTGGGTTT
TTCGTTTCGGACTGACGTGTTCGTGGACGAGGATATTGCGAGCGAGGAGA
GCATTCGACGACTCATTGAACTTGGGAATTCGTTGACCAAGGGTTTGACG
AACGTAATGGATCATCAGAGTTATATGCGGCAACGCGAGGATTTGCATGC
ATCAACCATGGAGAGCATTGGCTCTAGGGTTTTGATCTGGACGGTGGTGG
AGGCTGTGGTGTTGGTGGGTATGGCGGTTTGGCAGATCAGCATTATTAGC
AAGTTTTTTGAGGTGCGACGAGCAGTGTAAATGAGCGATACGACGACTTC
CTGCACGG
back to top
Synonyms
Publications