jgi.p|Nanoce1779_2|573329, mRNA_1756 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|573329
Unique NamemRNA_1756
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length589
Alignment locationscaffold_1:1413155..1413832 +

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Properties
Property NameValue
TranscriptId573415
TrackFilteredModels2
ProteinId573329
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:1413155..1413832 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573329gene_1756Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573329mRNA_1756-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1756CDS_1756Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1756 ID=mRNA_1756|Name=jgi.p|Nanoce1779_2|573329|organism=Nannochloropsis oceanica|type=mRNA|length=589bp
CAGCAGATCCACGGGAAGTTGACATGCACGACGACCACCTCTCTGCCACC
CACAGCACCTTTGACCCGGCATTGTTTGAAGAACTGGTGTATGCATGCGT
TAATCGCGTCCCCCGGGGCCGCGTCACTACCTACGGACACATTGCGCGCC
TTTGTCACCATCCAAAGCATGCGCGGCATGTCGGAAAAGCCCTGCAGCGC
CTGCCTTCAAATACTCATGTTCCGTGGCAGCGAATTATCAATGCGTCCTA
TTCCATTTCCTCGCGGGGGGACGGAGGCGCAGGCGCCCGTCTGCAAGCTG
CTAGGTTGGAGGAAGAAGGAGTGGCCCTGACTCAGGATTCCATGGGCGTG
TGGAAAGTTTCAGCGGGTGCTATGTGGAAGACAGGCCAGGCACAGTCACT
AGAGGACCTCTTAAAGGAAGAAGGTGGAGGGGGCGAGGGAGAAGGAGGGT
ACGTGAAGAAGAGTAAGAACGGCAAGGAGCGAAAAAGGGTGAATAAGCAA
GTTGTTGTGGATAGAGAGGGAGAAGGAGGGGAAGAGGGGGCACAATGACT
CTCTGACTGTATAATCAAGAACTAGTTCGATTATTTTGA
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protein sequence of jgi.p|Nanoce1779_2|573329

>mRNA_1756-protein ID=mRNA_1756-protein|Name=jgi.p|Nanoce1779_2|573329|organism=Nannochloropsis oceanica|type=polypeptide|length=175bp
MHDDHLSATHSTFDPALFEELVYACVNRVPRGRVTTYGHIARLCHHPKHA
RHVGKALQRLPSNTHVPWQRIINASYSISSRGDGGAGARLQAARLEEEGV
ALTQDSMGVWKVSAGAMWKTGQAQSLEDLLKEEGGGGEGEGGYVKKSKNG
KERKRVNKQVVVDREGEGGEEGAQ*
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mRNA from alignment at scaffold_1:1413155..1413832+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1756 ID=mRNA_1756|Name=jgi.p|Nanoce1779_2|573329|organism=Nannochloropsis oceanica|type=mRNA|length=678bp|location=Sequence derived from alignment at scaffold_1:1413155..1413832+ (Nannochloropsis oceanica)
CAGCAGATCCACGGGAAGTTGACATGCACGACGACCACCTCTCTGCCACC
CACAGCACCTTTGACCCGGCATTGTTTGAAGAACTGGTGTATGCATGCGT
TAATCGCGTCCCCCGGGGCCGCGTCACTACCTACGGTAAGTCGACAGCAA
ACCAGATTCTCTGCTTTTTTTGCTTAGCTGTCTTTCCTTACTATCCTCTT
TTACTACACCGACTCCCAACGCAGGACACATTGCGCGCCTTTGTCACCAT
CCAAAGCATGCGCGGCATGTCGGAAAAGCCCTGCAGCGCCTGCCTTCAAA
TACTCATGTTCCGTGGCAGCGAATTATCAATGCGTCCTATTCCATTTCCT
CGCGGGGGGACGGAGGCGCAGGCGCCCGTCTGCAAGCTGCTAGGTTGGAG
GAAGAAGGAGTGGCCCTGACTCAGGATTCCATGGGCGTGTGGAAAGTTTC
AGCGGGTGCTATGTGGAAGACAGGCCAGGCACAGTCACTAGAGGACCTCT
TAAAGGAAGAAGGTGGAGGGGGCGAGGGAGAAGGAGGGTACGTGAAGAAG
AGTAAGAACGGCAAGGAGCGAAAAAGGGTGAATAAGCAAGTTGTTGTGGA
TAGAGAGGGAGAAGGAGGGGAAGAGGGGGCACAATGACTCTCTGACTGTA
TAATCAAGAACTAGTTCGATTATTTTGA
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Coding sequence (CDS) from alignment at scaffold_1:1413155..1413832+

>mRNA_1756 ID=mRNA_1756|Name=jgi.p|Nanoce1779_2|573329|organism=Nannochloropsis oceanica|type=CDS|length=1050bp|location=Sequence derived from alignment at scaffold_1:1413155..1413832+ (Nannochloropsis oceanica)
ATGCACGACGACCACCTCTCTGCCACCCACAGCACCTTTGACCCGGCATT
GTTTGAAGAACTGGTGTATGCATGCGTTAATCGCGTCCCCCGGGGCCGCG
TCACTACCTACGGACACATTGCGCGCCTTTGTCACCATCCAAAGCATGCG
CGGCATGTCGGAAAAGCCCTGCAGCGCCTGCCTTCAAATACTCATGTTCC
GTGGCAGCGAATTATCAATGCGTCCTATTCCATTTCCTCGCGGGGGGACG
GAGGCGCAGGCGCCCGTCTGCAAGCTGCTAGGTTGGAGGAAGAAGGAGTG
GCCCTGACTCAGGATTCCATGGGCGTGTGGAAAGTTTCAGCGGGTGCTAT
GTGGAAGACAGGCCAGGCACAGTCACTAGAGGACCTCTTAAAGGAAGAAG
GTGGAGGGGGCGAGGGAGAAGGAGGGTACGTGAAGAAGAGTAAGAACGGC
AAGGAGCGAAAAAGGGTGAATAAGCAAGTTGTTGTGGATAGAGAGGGAGA
AGGAGGGGAAGAGGGGGCACAATGAATGCACGACGACCACCTCTCTGCCA
CCCACAGCACCTTTGACCCGGCATTGTTTGAAGAACTGGTGTATGCATGC
GTTAATCGCGTCCCCCGGGGCCGCGTCACTACCTACGGACACATTGCGCG
CCTTTGTCACCATCCAAAGCATGCGCGGCATGTCGGAAAAGCCCTGCAGC
GCCTGCCTTCAAATACTCATGTTCCGTGGCAGCGAATTATCAATGCGTCC
TATTCCATTTCCTCGCGGGGGGACGGAGGCGCAGGCGCCCGTCTGCAAGC
TGCTAGGTTGGAGGAAGAAGGAGTGGCCCTGACTCAGGATTCCATGGGCG
TGTGGAAAGTTTCAGCGGGTGCTATGTGGAAGACAGGCCAGGCACAGTCA
CTAGAGGACCTCTTAAAGGAAGAAGGTGGAGGGGGCGAGGGAGAAGGAGG
GTACGTGAAGAAGAGTAAGAACGGCAAGGAGCGAAAAAGGGTGAATAAGC
AAGTTGTTGTGGATAGAGAGGGAGAAGGAGGGGAAGAGGGGGCACAATGA
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Synonyms
Publications