jgi.p|Nanoce1779_2|573317, mRNA_1752 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|573317
Unique Name	mRNA_1752
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2290
Alignment location	scaffold_1:1402290..1404579 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	573403
Track	FilteredModels2
ProteinId	573317

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:1402290..1404579 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|573317	gene_1752	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|573317	mRNA_1752-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1752	CDS_1752	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:1402290..1404579+
coding sequence from alignment at scaffold_1:1402290..1404579+

mRNA sequence

>mRNA_1752 ID=mRNA_1752|Name=jgi.p|Nanoce1779_2|573317|organism=Nannochloropsis oceanica|type=mRNA|length=2290bp
CGATCCCCCGGGGGAGGGAGGGACGGAGGGAGGGGGGAAAGGCGGGTGTT
TCCCGCGGTTGCATTTGCTGTTGACTGCGGGAGGAGGAGAAGAAGTCGGG
AGCGGGGAAGGGATGGATCGGAGTTCAACGGGCGTGGCGGCCTTGATGGA
GGAAGTGCGGGTGCTGGTGCAAGGACTCGGCTTTTTAATTGCCGACGATT
TCTCCGGGGAACAGCCCGCTATCCCCGAATCCATTCACCGTCTTTGCTTC
CAAAGCTCCTCCTACTCTTCGCCTCCCTTACTCGCATCCTCTTCCCTGTC
CTCCTCCTCCACATCCTCCCTGTCCTTCTCCTCCTCCCCTTCTCCCGAGA
GCACCTCGGCCCTCCTCCTAGAAACCTGCGGACAGGTCCACCTCCTTGCC
ACTTTCCTCCTTCAACGCGTCATCCACGACCCGAACGACCCCATTCTCTC
CCCCTATCTCACCGAAGCGGTGCTCTGGTTCTTGACCCGCTGGGCACGAA
CGTACGTCCTGCCTGACACCCGTCTCTATAGGAATGGCATATTAGCTCCG
TCCCTCCTCCAAGCGTTCGGGGGGGAGGCAGGGCAGCAACAAGTCGACGG
ATTGTTGAGGCTCGCCTGGGGGTTTCTGACGCACTGGCACTCGGAGAGTG
ACGTGGCGGAGGCAGCTATAGGACTGCTCCGAGCGGTGCTTCTGGTAGGG
GGGGGGGCGTCAGGACCCGCGGCCTTGAGGTGCGACACGTGGAAGGTAAT
CTTGGCAGCGATGGAGGCGGAGGGCGCAATGTTATTGCAGCAGCAATCGC
AGCAGCAGCAGCAGCATCAGGATGGTCACGGTTACGGTCATGGACAACTG
CACCAGCAGCAGCAGCAGCACCCTCCTCACATACCTCCGGAGCTGGGCTA
TATCCGTTTAAGACCTAATGTGCGTGGAGAGCTCCTGGAGGTGATTGTCG
GTGGGGTCCTCTCCCATGAAAACGACCCGGAGGCACCTCGAGCACTCATG
CAAGTGGCGAACCCCCTCGAAACTCGGCTCCAACACCTTCTTCTGAAGCT
CTCCTCCGCTGCTGCCACTGCTTCCATGAAAGGAAACGCCACCGCAGCAA
CCGCAGCGGCAAGGGCGCGCGCAGCACTCGCACAGGAGGTTGGGGAGGTG
GCTGGCCTCTACGCAGGTTTGGCCAAGGCGGTGGATCATTCGGGGCAGGC
CCTCCTTGCGTGTTTGGTAACCCGTGCGTTGGAGCCGTTGGTGGGCGCGG
CCACTCAGTGTGGCCCGTATCCGGAGACGATGCACGCCGTGCTTGAATTC
TTGAGAAATTACGCCGAAGTCCATATTTCCAGTTTAGGTGCCGAGGCCAC
CATGGCGTTGCTGACAGCAGCGGGTCAAGCGCTCAAAGCCTACGCAGCCC
ACAATTTGGGGAGGACTAGGAAAGACGCCAATTCGAAGGAGGAGGCGGTG
GCGGACATGTTGTGTGTATTGGAGCTTTTATCGTATCTGGCAACGAAGGA
CTTTATTGATTTCTCGGCCGAACACGAGGGGAAAGTGGCGGCAGATGCAG
TGGCGGATGTGGTATTTTTTGGGCTGGAGCGGATGATTCCGTTAATGACG
GAAGAATACCTGGACTTCCCTCCTTTGGGAAAGCAGTATTTCACCCTGGT
AAACTCGATGGTGTCAACATACACGGGACGGGTGGCTTTGTTGCCGCATC
CGCTGTTCATGCAGTTGGTGCAGAGCGTCATGTTCGGGGTGCAACGACCC
GATAGTGAGATTGCTCGGGATTCGTTGCGGGCATTGGCGGGGTTGGCCTC
ATTCCATGCTAAAGCATGCCAGGAAGCTCAGAATGGAGGGGGCGGAAGGG
CAGGCTTGGGTGTGCATGTGGCGGCCCATCCAGGTTTGTTGTCGGATTGT
ATGCACAAGCTGCTGCATATGGTGGTGTACGAGGGGAGCATTTGGGATAG
GCTGGACGCGGCCTCGAGTGCTCTCCTGGCTTTGGTCCTGTGTGATCGTG
ACGCATTCTTACGGATGGTTCATGGAATTTTGGAGCAGCAGCCACCAGGT
GTCAAGGGCAGGCTGCGGCACGAATTCGAAGAAATGGTCAAAGCGATCCC
CCCTCCGCAGGTGCCACCCGCCGGTGGAGGAGGAAAGGGGCGAGGGATGA
TAACGGACCGACAGACAAAACTGGCTTTTCGGGACCGTCTAAAAGAGTTT
GCCAAGCGGGTGCGGCCGTTTATGCAGATGCGGTGAAGGGAGGGAGGGAG
AGAAGAGGGGTGGAGGAGAAAGGGTAGGAAACAAATGCAC

protein sequence of jgi.p|Nanoce1779_2|573317

>mRNA_1752-protein ID=mRNA_1752-protein|Name=jgi.p|Nanoce1779_2|573317|organism=Nannochloropsis oceanica|type=polypeptide|length=708bp
MDRSSTGVAALMEEVRVLVQGLGFLIADDFSGEQPAIPESIHRLCFQSSS
YSSPPLLASSSLSSSSTSSLSFSSSPSPESTSALLLETCGQVHLLATFLL
QRVIHDPNDPILSPYLTEAVLWFLTRWARTYVLPDTRLYRNGILAPSLLQ
AFGGEAGQQQVDGLLRLAWGFLTHWHSESDVAEAAIGLLRAVLLVGGGAS
GPAALRCDTWKVILAAMEAEGAMLLQQQSQQQQQHQDGHGYGHGQLHQQQ
QQHPPHIPPELGYIRLRPNVRGELLEVIVGGVLSHENDPEAPRALMQVAN
PLETRLQHLLLKLSSAAATASMKGNATAATAAARARAALAQEVGEVAGLY
AGLAKAVDHSGQALLACLVTRALEPLVGAATQCGPYPETMHAVLEFLRNY
AEVHISSLGAEATMALLTAAGQALKAYAAHNLGRTRKDANSKEEAVADML
CVLELLSYLATKDFIDFSAEHEGKVAADAVADVVFFGLERMIPLMTEEYL
DFPPLGKQYFTLVNSMVSTYTGRVALLPHPLFMQLVQSVMFGVQRPDSEI
ARDSLRALAGLASFHAKACQEAQNGGGGRAGLGVHVAAHPGLLSDCMHKL
LHMVVYEGSIWDRLDAASSALLALVLCDRDAFLRMVHGILEQQPPGVKGR
LRHEFEEMVKAIPPPQVPPAGGGGKGRGMITDRQTKLAFRDRLKEFAKRV
RPFMQMR*

mRNA from alignment at scaffold_1:1402290..1404579+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1752 ID=mRNA_1752|Name=jgi.p|Nanoce1779_2|573317|organism=Nannochloropsis oceanica|type=mRNA|length=2290bp|location=Sequence derived from alignment at scaffold_1:1402290..1404579+ (Nannochloropsis oceanica)
CGATCCCCCGGGGGAGGGAGGGACGGAGGGAGGGGGGAAAGGCGGGTGTT
TCCCGCGGTTGCATTTGCTGTTGACTGCGGGAGGAGGAGAAGAAGTCGGG
AGCGGGGAAGGGATGGATCGGAGTTCAACGGGCGTGGCGGCCTTGATGGA
GGAAGTGCGGGTGCTGGTGCAAGGACTCGGCTTTTTAATTGCCGACGATT
TCTCCGGGGAACAGCCCGCTATCCCCGAATCCATTCACCGTCTTTGCTTC
CAAAGCTCCTCCTACTCTTCGCCTCCCTTACTCGCATCCTCTTCCCTGTC
CTCCTCCTCCACATCCTCCCTGTCCTTCTCCTCCTCCCCTTCTCCCGAGA
GCACCTCGGCCCTCCTCCTAGAAACCTGCGGACAGGTCCACCTCCTTGCC
ACTTTCCTCCTTCAACGCGTCATCCACGACCCGAACGACCCCATTCTCTC
CCCCTATCTCACCGAAGCGGTGCTCTGGTTCTTGACCCGCTGGGCACGAA
CGTACGTCCTGCCTGACACCCGTCTCTATAGGAATGGCATATTAGCTCCG
TCCCTCCTCCAAGCGTTCGGGGGGGAGGCAGGGCAGCAACAAGTCGACGG
ATTGTTGAGGCTCGCCTGGGGGTTTCTGACGCACTGGCACTCGGAGAGTG
ACGTGGCGGAGGCAGCTATAGGACTGCTCCGAGCGGTGCTTCTGGTAGGG
GGGGGGGCGTCAGGACCCGCGGCCTTGAGGTGCGACACGTGGAAGGTAAT
CTTGGCAGCGATGGAGGCGGAGGGCGCAATGTTATTGCAGCAGCAATCGC
AGCAGCAGCAGCAGCATCAGGATGGTCACGGTTACGGTCATGGACAACTG
CACCAGCAGCAGCAGCAGCACCCTCCTCACATACCTCCGGAGCTGGGCTA
TATCCGTTTAAGACCTAATGTGCGTGGAGAGCTCCTGGAGGTGATTGTCG
GTGGGGTCCTCTCCCATGAAAACGACCCGGAGGCACCTCGAGCACTCATG
CAAGTGGCGAACCCCCTCGAAACTCGGCTCCAACACCTTCTTCTGAAGCT
CTCCTCCGCTGCTGCCACTGCTTCCATGAAAGGAAACGCCACCGCAGCAA
CCGCAGCGGCAAGGGCGCGCGCAGCACTCGCACAGGAGGTTGGGGAGGTG
GCTGGCCTCTACGCAGGTTTGGCCAAGGCGGTGGATCATTCGGGGCAGGC
CCTCCTTGCGTGTTTGGTAACCCGTGCGTTGGAGCCGTTGGTGGGCGCGG
CCACTCAGTGTGGCCCGTATCCGGAGACGATGCACGCCGTGCTTGAATTC
TTGAGAAATTACGCCGAAGTCCATATTTCCAGTTTAGGTGCCGAGGCCAC
CATGGCGTTGCTGACAGCAGCGGGTCAAGCGCTCAAAGCCTACGCAGCCC
ACAATTTGGGGAGGACTAGGAAAGACGCCAATTCGAAGGAGGAGGCGGTG
GCGGACATGTTGTGTGTATTGGAGCTTTTATCGTATCTGGCAACGAAGGA
CTTTATTGATTTCTCGGCCGAACACGAGGGGAAAGTGGCGGCAGATGCAG
TGGCGGATGTGGTATTTTTTGGGCTGGAGCGGATGATTCCGTTAATGACG
GAAGAATACCTGGACTTCCCTCCTTTGGGAAAGCAGTATTTCACCCTGGT
AAACTCGATGGTGTCAACATACACGGGACGGGTGGCTTTGTTGCCGCATC
CGCTGTTCATGCAGTTGGTGCAGAGCGTCATGTTCGGGGTGCAACGACCC
GATAGTGAGATTGCTCGGGATTCGTTGCGGGCATTGGCGGGGTTGGCCTC
ATTCCATGCTAAAGCATGCCAGGAAGCTCAGAATGGAGGGGGCGGAAGGG
CAGGCTTGGGTGTGCATGTGGCGGCCCATCCAGGTTTGTTGTCGGATTGT
ATGCACAAGCTGCTGCATATGGTGGTGTACGAGGGGAGCATTTGGGATAG
GCTGGACGCGGCCTCGAGTGCTCTCCTGGCTTTGGTCCTGTGTGATCGTG
ACGCATTCTTACGGATGGTTCATGGAATTTTGGAGCAGCAGCCACCAGGT
GTCAAGGGCAGGCTGCGGCACGAATTCGAAGAAATGGTCAAAGCGATCCC
CCCTCCGCAGGTGCCACCCGCCGGTGGAGGAGGAAAGGGGCGAGGGATGA
TAACGGACCGACAGACAAAACTGGCTTTTCGGGACCGTCTAAAAGAGTTT
GCCAAGCGGGTGCGGCCGTTTATGCAGATGCGGTGAAGGGAGGGAGGGAG
AGAAGAGGGGTGGAGGAGAAAGGGTAGGAAACAAATGCAC

Coding sequence (CDS) from alignment at scaffold_1:1402290..1404579+

>mRNA_1752 ID=mRNA_1752|Name=jgi.p|Nanoce1779_2|573317|organism=Nannochloropsis oceanica|type=CDS|length=2124bp|location=Sequence derived from alignment at scaffold_1:1402290..1404579+ (Nannochloropsis oceanica)
ATGGATCGGAGTTCAACGGGCGTGGCGGCCTTGATGGAGGAAGTGCGGGT
GCTGGTGCAAGGACTCGGCTTTTTAATTGCCGACGATTTCTCCGGGGAAC
AGCCCGCTATCCCCGAATCCATTCACCGTCTTTGCTTCCAAAGCTCCTCC
TACTCTTCGCCTCCCTTACTCGCATCCTCTTCCCTGTCCTCCTCCTCCAC
ATCCTCCCTGTCCTTCTCCTCCTCCCCTTCTCCCGAGAGCACCTCGGCCC
TCCTCCTAGAAACCTGCGGACAGGTCCACCTCCTTGCCACTTTCCTCCTT
CAACGCGTCATCCACGACCCGAACGACCCCATTCTCTCCCCCTATCTCAC
CGAAGCGGTGCTCTGGTTCTTGACCCGCTGGGCACGAACGTACGTCCTGC
CTGACACCCGTCTCTATAGGAATGGCATATTAGCTCCGTCCCTCCTCCAA
GCGTTCGGGGGGGAGGCAGGGCAGCAACAAGTCGACGGATTGTTGAGGCT
CGCCTGGGGGTTTCTGACGCACTGGCACTCGGAGAGTGACGTGGCGGAGG
CAGCTATAGGACTGCTCCGAGCGGTGCTTCTGGTAGGGGGGGGGGCGTCA
GGACCCGCGGCCTTGAGGTGCGACACGTGGAAGGTAATCTTGGCAGCGAT
GGAGGCGGAGGGCGCAATGTTATTGCAGCAGCAATCGCAGCAGCAGCAGC
AGCATCAGGATGGTCACGGTTACGGTCATGGACAACTGCACCAGCAGCAG
CAGCAGCACCCTCCTCACATACCTCCGGAGCTGGGCTATATCCGTTTAAG
ACCTAATGTGCGTGGAGAGCTCCTGGAGGTGATTGTCGGTGGGGTCCTCT
CCCATGAAAACGACCCGGAGGCACCTCGAGCACTCATGCAAGTGGCGAAC
CCCCTCGAAACTCGGCTCCAACACCTTCTTCTGAAGCTCTCCTCCGCTGC
TGCCACTGCTTCCATGAAAGGAAACGCCACCGCAGCAACCGCAGCGGCAA
GGGCGCGCGCAGCACTCGCACAGGAGGTTGGGGAGGTGGCTGGCCTCTAC
GCAGGTTTGGCCAAGGCGGTGGATCATTCGGGGCAGGCCCTCCTTGCGTG
TTTGGTAACCCGTGCGTTGGAGCCGTTGGTGGGCGCGGCCACTCAGTGTG
GCCCGTATCCGGAGACGATGCACGCCGTGCTTGAATTCTTGAGAAATTAC
GCCGAAGTCCATATTTCCAGTTTAGGTGCCGAGGCCACCATGGCGTTGCT
GACAGCAGCGGGTCAAGCGCTCAAAGCCTACGCAGCCCACAATTTGGGGA
GGACTAGGAAAGACGCCAATTCGAAGGAGGAGGCGGTGGCGGACATGTTG
TGTGTATTGGAGCTTTTATCGTATCTGGCAACGAAGGACTTTATTGATTT
CTCGGCCGAACACGAGGGGAAAGTGGCGGCAGATGCAGTGGCGGATGTGG
TATTTTTTGGGCTGGAGCGGATGATTCCGTTAATGACGGAAGAATACCTG
GACTTCCCTCCTTTGGGAAAGCAGTATTTCACCCTGGTAAACTCGATGGT
GTCAACATACACGGGACGGGTGGCTTTGTTGCCGCATCCGCTGTTCATGC
AGTTGGTGCAGAGCGTCATGTTCGGGGTGCAACGACCCGATAGTGAGATT
GCTCGGGATTCGTTGCGGGCATTGGCGGGGTTGGCCTCATTCCATGCTAA
AGCATGCCAGGAAGCTCAGAATGGAGGGGGCGGAAGGGCAGGCTTGGGTG
TGCATGTGGCGGCCCATCCAGGTTTGTTGTCGGATTGTATGCACAAGCTG
CTGCATATGGTGGTGTACGAGGGGAGCATTTGGGATAGGCTGGACGCGGC
CTCGAGTGCTCTCCTGGCTTTGGTCCTGTGTGATCGTGACGCATTCTTAC
GGATGGTTCATGGAATTTTGGAGCAGCAGCCACCAGGTGTCAAGGGCAGG
CTGCGGCACGAATTCGAAGAAATGGTCAAAGCGATCCCCCCTCCGCAGGT
GCCACCCGCCGGTGGAGGAGGAAAGGGGCGAGGGATGATAACGGACCGAC
AGACAAAACTGGCTTTTCGGGACCGTCTAAAAGAGTTTGCCAAGCGGGTG
CGGCCGTTTATGCAGATGCGGTGA

Synonyms

Publications