jgi.p|Nanoce1779_2|667616, mRNA_1751 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|667616
Unique Name	mRNA_1751
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2379
Alignment location	scaffold_1:1397252..1399971 -

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Properties


Property Name	Value
TranscriptId	667702
Track	FilteredModels2
ProteinId	667616

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:1397252..1399971 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|667616	gene_1751	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|667616	mRNA_1751-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1751	CDS_1751	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:1397252..1399971-
coding sequence from alignment at scaffold_1:1397252..1399971-

mRNA sequence

>mRNA_1751 ID=mRNA_1751|Name=jgi.p|Nanoce1779_2|667616|organism=Nannochloropsis oceanica|type=mRNA|length=2379bp
ATGGCAAGCACGACAAGCACGAGTAGCGGCGGTCTCACCAGCGTCAGTGC
GCAGCAACCCGGTGCTTCAGTGCATCCCAGCAGCGGCGGTGGCAGCAGCG
GCAGCCCCACGGCGCATACGGAGGAGGAGCTCTCTCGCCTTGATGAGGAC
ATCATTGAGTACTTACTATTTAGGGGCTTCACTAAGACCATTGCCACGTT
TGAGGAGGACAGAAGGGACGACAGGCTCAAGGCTTTCGATGTGGATCGAT
TATTGGTTCACATTGACTCGCTTGTCCGGACCTATGACATTCAGGGTTTG
TTAAGCCTGTGGAGTTTCCTGGACAGGCGATTGTTTAGTCATTTGGACGT
GTACCACGCAAAGGAGATGCACAAAATGAAGATCGCCCTTCTGCGGTACT
ACGTCGTGTACGCCATCAAATCCGACCGTCGGGACAAGGCAATCGATTTC
CTCGCCAAGTACACCCTCCCAGCATCCTCCTCATTCCCTTCCTCCTCCTC
TTCCTCTTCCCCTTCTTCGCACCTTTCCGTTCCTCACCAGCTCCAAGCCG
AAACTGACGCGGCCTGGCGACAGTGGTTCGTTCTCCCCCATCTTCCCGAC
CCCGCCCGAGACCCGCAATTTCATGTCTTCTTCTCCCCTTCGTGGGCTGA
TACTTTTCGCGTGTCGTTAAGAAACGTCTTGACCGTTATTTTTTACTCAG
TCCCGGCGCCAAAGCTACTGACATTGAGGGCATATGAGGACGGGGCATGG
CATGTGAAGAGTGAGCTCATGAGGGCGAGACAGGCGGTCGCGGAAAGGGA
TAAAGTGATGGTTACCTGGCAGGGAGCCATGATGAAATTGGCCAAGACGG
TAGGGAATTCGATAGGGGCAATGCAGAGATGGAAGGAAGAAGAGAGGCAT
CAGCAGCACTTGCGGCAGCTGCAGTTGGAGCTGGGGGCGGCGGGAGGAGG
GAGGCAGGGAAGCAGGTCAGGGAAGAAGGAGAAGACTTTATTTGCTGAGG
AGGAGGAGGAGGAAATAGGGGAGGGGGGGAGCGAAGAAGGGGATGCGGAT
GAAGGCCAGCAACAGCAGCATCGATGGAAGGAGGCGGAGTCGGCAGCGTT
GCAGGCGGTGCTGGACGTGACAGCTGCTTTGTCCTCTTACAAACCTGGGG
TTAGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAAGAATTTGGAGGAA
GCCCTCGAGGCCTTGACGGCCAAGACGGAAGCGTGGCTGGGTGTGATGCA
AGGGGGTTCGTCGTGAAGGAGGGAGAGGTGCAGGGAGTGTACATATATCA
CCAGTCACACACAAAAAAATGAATGAAAGTTGATCGGTAAAATAGCAGGG
CTGCTGCTGCTGCTCCCCCACAGCCACGCAGAGGAGAGCAGGAGACAGGG
AACGCTGAGATTCTTTTTATAGCAAATTTATCAGTTTTTTTCCCTTTCTG
CCGTTCCTTTTGGATCAAGCTCTGACCATCATTCGGCATTGTTGTTGATG
TATGCGCCTCCACAGACCCACTGTGAAGCTTGCTCTCTCATTTGAATAAA
TTGGTGAATAAATGAACAAATTAATTCGAAAAGTGCACTCATGCATGGAA
GCGGAGGGGGAGAAAAGATAAGGGCACCACTGACTCCCTCCCTCCCTTCC
TCTTTTGGCATTGCGGAGAAGGAGACCCTCCCTTCCGTCATCGACTGTCG
GCCAATGCTCTCAATCTTGCTACTCTCCCACGCTCCTTCCCAGTGTGTCA
CAAAGACGCACATGCACACGTAGCCATACACGTAAGCCGTGGAGATCCAC
CTTGATAGATACATACAGTGCCGTACTCTTATTCTCGCACTTTTTAAATT
TTACAGCCTTCATTTATTTATCCTTCTCCTCCTCCATGGGCTCTTTCTTC
ATTTTTCCACCTACAAACGTTTCTTTGCATTTCCTCCTTCACCTCCTCCT
CATCTCTTTTCCGCGATTTTCTCTTCCCTGATTTCTTCTCCTCCTCCTTC
TCAACATTCTCATCAGGCGGGCATCTGCCCTGTGAGATAACGGTGCCGCA
ACGCCGCACACGCCCCCGTGAAGGCCGCATTGTAGTCCAGAGCGACTCAT
TCTTCTGATAATCGGAGCAGTCATCCACGAAGTCGTCCTTCTCCCCAGGG
CCACCCACCAAAGCGCCGTACAACATATGGGGATGTGGTTTCGTCGAACA
TTCACAGTGGCCCCCGTCACAGGACGAGGAACGATGGTGGGGCGCGCGGG
GAAAGTCCTCGCTAGTGTCCGGGATGAAGGAAGAAGAGGAGAAAGGGTGA
GAAACGTGTGGGTAGGTAACCTAATTTCTAGGTGAAGACCTGTACCTCTG
TCCCTCCGTCCCTCCCTCCCTCGCTCCTC

protein sequence of jgi.p|Nanoce1779_2|667616

>mRNA_1751-protein ID=mRNA_1751-protein|Name=jgi.p|Nanoce1779_2|667616|organism=Nannochloropsis oceanica|type=polypeptide|length=422bp
MASTTSTSSGGLTSVSAQQPGASVHPSSGGGSSGSPTAHTEEELSRLDED
IIEYLLFRGFTKTIATFEEDRRDDRLKAFDVDRLLVHIDSLVRTYDIQGL
LSLWSFLDRRLFSHLDVYHAKEMHKMKIALLRYYVVYAIKSDRRDKAIDF
LAKYTLPASSSFPSSSSSSSPSSHLSVPHQLQAETDAAWRQWFVLPHLPD
PARDPQFHVFFSPSWADTFRVSLRNVLTVIFYSVPAPKLLTLRAYEDGAW
HVKSELMRARQAVAERDKVMVTWQGAMMKLAKTVGNSIGAMQRWKEEERH
QQHLRQLQLELGAAGGGRQGSRSGKKEKTLFAEEEEEEIGEGGSEEGDAD
EGQQQQHRWKEAESAALQAVLDVTAALSSYKPGVRGGGGGGGGGGKNLEE
ALEALTAKTEAWLGVMQGGSS*

mRNA from alignment at scaffold_1:1397252..1399971-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1751 ID=mRNA_1751|Name=jgi.p|Nanoce1779_2|667616|organism=Nannochloropsis oceanica|type=mRNA|length=2720bp|location=Sequence derived from alignment at scaffold_1:1397252..1399971- (Nannochloropsis oceanica)
ATGGCAAGCACGACAAGCACGAGTAGCGGCGGTCTCACCAGCGTCAGTGC
GCAGCAACCCGGTGCTTCAGTGCATCCCAGCAGCGGCGGTGGCAGCAGCG
GCAGCCCCACGGCGCATACGGAGGAGGAGCTCTCTCGCCTTGATGAGGAC
ATCATTGAGTACTTACTATTTAGGGGCTTCACTAAGACCATTGCCACGTT
TGAGGAGGACAGAAGGGACGACAGGCTCAAGGCTTTCGATGTGGATCGAT
TATTGGTTCACATTGACTCGCTTGTCCGGACCTATGACATTCAGGGTTTG
TTAAGCCTGTGGAGTTTCCTGGACAGGCGATTGTTTAGTCATTTGGACGT
GTACCACGCAAAGGAGATGCACAAAATGAAGATCGCCCTTCTGCGGTACT
ACGTCGTGTACGCCATCAAATCCGACCGTCGGGACAAGGCAATCGATTTC
CTCGCCAAGTACACCCTCCCAGCATCCTCCTCATTCCCTTCCTCCTCCTC
TTCCTCTTCCCCTTCTTCGCACCTTTCCGTTCCTCACCAGCTCCAAGCCG
AAACTGACGCGGCCTGGCGACAGTGGTTCGTTCTCCCCCATCTTCCCGAC
CCCGCCCGAGACCCGCAATTTCATGTCTTCTTCTCCCCTTCGTGGGCTGA
TACTTTTCGCGTGTCGTTAAGAAACGTCTTGACCGTTATTTTTTACTCAG
TCCCGGCGCCAAAGCTACTGACATTGAGGGCATATGAGGACGGGGCATGG
CATGTGAAGAGTGAGCTCATGAGGGCGAGACAGGCGGTCGCGGAAAGGGA
TAAAGTGATGGTTACCTGGCAGGGAGCCATGATGAAATTGGCCAAGACGG
TAGGGAATTCGATAGGGGCAATGCAGAGATGGAAGGAAGAAGAGAGGCAT
CAGCAGCACTTGCGGCAGCTGCAGTTGGAGCTGGGGGCGGCGGGAGGAGG
GAGGCAGGGAAGCAGGTCAGGGAAGAAGGAGAAGACTTTATTTGCTGAGG
AGGAGGAGGAGGAAATAGGGGAGGGGGGGAGCGAAGAAGGGGATGCGGAT
GAAGGCCAGCAACAGCAGCATCGATGGAAGGAGGCGGAGTCGGCAGCGTT
GCAGGCGGTGCTGGACGTGACAGCTGCTTTGTCCTCTTACAAACCTGGGG
TTAGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAAGAATTTGGAGGAA
GCCCTCGAGGCCTTGACGGCCAAGACGGAAGCGTGGCTGGGTGTGATGCA
AGGGGGTTCGTCGTGAAGGAGGGAGAGGTGCAGGGAGTGTACATATATCA
CCAGTCACACACAAAAAAATGAATGAAAGTTGATCGGTAAAATAGCAGGG
CTGCTGCTGCTGCTCCCCCACAGCCACGCAGAGGAGAGCAGGAGACAGGG
AACGCTGAGATTCTTTTTATAGCAAATTTATCAGTTTTTTTCCCTTTCTG
CCGTTCCTTTTGGATCAAGCTCTGACCATCATTCGGCATTGTTGTTGATG
TATGCGCCTCCACAGACCCACTGTGAAGCTTGCTCTCTCATTTGAATAAA
TTGGTGAATAAATGAACAAATTAATTCGAAAAGTGCACTCATGCATGGAA
GCGGAGGGGGAGAAAAGATAAGGGCACCACTGACTCCCTCCCTCCCTTCC
TCTTTTGGCATTGCGGAGAAGGAGACCCTCCCTTCCGTCATCGACTGTCG
GCCAATGCTCTCAATCTTGCTACTCTCCCACGCTCCTTCCCAGTGTGTCA
CAAAGACGCACATGCACACGTAGCCATACACGTAAGCCGTGGAGATCCAC
CTTGATAGATACATACAGTGCCGTACTCTTATTCTCGCACTTTTTAAATT
TTACAGCCTTCATTTATTTATCCTTCTCCTCCTCCATGGGCTCTTTCTTC
ATTTTTCCACCTACAAACGTTTCTTTGCATTTCCTCCTTCACCTCCTCCT
CATCTCTTTTCCGCGATTTTCTCTTCCCTGATTTCTTCTCCTCCTCCTTC
TCAACATTCTCATCAGGCGGGCATCTGCCCTGTGAGATAACGGTGCCGCA
ACGCCGCACACGCCCCCGTGAAGGCCGCATTGTAGTCCAGAGCGACTGTG
GGGAAATAAGAGAGGAAGAGGGTTAATGATTCCCGCAATGGTAGTAGAGA
TCTACCATCGAGTTACTTCATAGGGGCACACAGACTCAGAGGAAAACCTG
ATTTCCCTCCGTTCATTTATTCCCTCCCCTTCCCCCCCTTCTCCCCTCCC
TGCGATTCAGTCCTGCCGCCATTTTTCCTCGCTTTCTGCCACCATCTTTA
CCTTCCTGTGAGTGTTCGTATGTGGAAAGGGAAAAAAAGGAGAAAAGGAC
AAGTCAGCAAGTCAGCACTCCATTCTCCCTTCCTCCTCGATCTCTGCCCC
CTCTTTTTCTTGCTCCCCCTCCCCTTCCTCACGACGTACATTCTTCTGAT
AATCGGAGCAGTCATCCACGAAGTCGTCCTTCTCCCCAGGGCCACCCACC
AAAGCGCCGTACAACATATGGGGATGTGGTTTCGTCGAACATTCACAGTG
GCCCCCGTCACAGGACGAGGAACGATGGTGGGGCGCGCGGGGAAAGTCCT
CGCTAGTGTCCGGGATGAAGGAAGAAGAGGAGAAAGGGTGAGAAACGTGT
GGGTAGGTAACCTAATTTCTAGGTGAAGACCTGTACCTCTGTCCCTCCGT
CCCTCCCTCCCTCGCTCCTC

Coding sequence (CDS) from alignment at scaffold_1:1397252..1399971-

>mRNA_1751 ID=mRNA_1751|Name=jgi.p|Nanoce1779_2|667616|organism=Nannochloropsis oceanica|type=CDS|length=1266bp|location=Sequence derived from alignment at scaffold_1:1397252..1399971- (Nannochloropsis oceanica)
ATGGCAAGCACGACAAGCACGAGTAGCGGCGGTCTCACCAGCGTCAGTGC
GCAGCAACCCGGTGCTTCAGTGCATCCCAGCAGCGGCGGTGGCAGCAGCG
GCAGCCCCACGGCGCATACGGAGGAGGAGCTCTCTCGCCTTGATGAGGAC
ATCATTGAGTACTTACTATTTAGGGGCTTCACTAAGACCATTGCCACGTT
TGAGGAGGACAGAAGGGACGACAGGCTCAAGGCTTTCGATGTGGATCGAT
TATTGGTTCACATTGACTCGCTTGTCCGGACCTATGACATTCAGGGTTTG
TTAAGCCTGTGGAGTTTCCTGGACAGGCGATTGTTTAGTCATTTGGACGT
GTACCACGCAAAGGAGATGCACAAAATGAAGATCGCCCTTCTGCGGTACT
ACGTCGTGTACGCCATCAAATCCGACCGTCGGGACAAGGCAATCGATTTC
CTCGCCAAGTACACCCTCCCAGCATCCTCCTCATTCCCTTCCTCCTCCTC
TTCCTCTTCCCCTTCTTCGCACCTTTCCGTTCCTCACCAGCTCCAAGCCG
AAACTGACGCGGCCTGGCGACAGTGGTTCGTTCTCCCCCATCTTCCCGAC
CCCGCCCGAGACCCGCAATTTCATGTCTTCTTCTCCCCTTCGTGGGCTGA
TACTTTTCGCGTGTCGTTAAGAAACGTCTTGACCGTTATTTTTTACTCAG
TCCCGGCGCCAAAGCTACTGACATTGAGGGCATATGAGGACGGGGCATGG
CATGTGAAGAGTGAGCTCATGAGGGCGAGACAGGCGGTCGCGGAAAGGGA
TAAAGTGATGGTTACCTGGCAGGGAGCCATGATGAAATTGGCCAAGACGG
TAGGGAATTCGATAGGGGCAATGCAGAGATGGAAGGAAGAAGAGAGGCAT
CAGCAGCACTTGCGGCAGCTGCAGTTGGAGCTGGGGGCGGCGGGAGGAGG
GAGGCAGGGAAGCAGGTCAGGGAAGAAGGAGAAGACTTTATTTGCTGAGG
AGGAGGAGGAGGAAATAGGGGAGGGGGGGAGCGAAGAAGGGGATGCGGAT
GAAGGCCAGCAACAGCAGCATCGATGGAAGGAGGCGGAGTCGGCAGCGTT
GCAGGCGGTGCTGGACGTGACAGCTGCTTTGTCCTCTTACAAACCTGGGG
TTAGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAAGAATTTGGAGGAA
GCCCTCGAGGCCTTGACGGCCAAGACGGAAGCGTGGCTGGGTGTGATGCA
AGGGGGTTCGTCGTGA

Synonyms

Publications