jgi.p|Nanoce1779_2|231687, mRNA_175 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|231687
Unique NamemRNA_175
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length759
Alignment locationscaffold_3:440715..441473 +

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Properties
Property NameValue
TranscriptId231773
TrackFilteredModels2
ProteinId231687
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:440715..441473 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|231687gene_175Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|231687mRNA_175-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_175CDS_175Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_175 ID=mRNA_175|Name=jgi.p|Nanoce1779_2|231687|organism=Nannochloropsis oceanica|type=mRNA|length=759bp
GACCCAGGCACATTGTCACTGTCCGTCAAGGATTCCAAGGCTATATGCGG
CATGACAAACAAACAACAGTGCCAAATGGGTATCGTTGGACTGTAACAGT
TGCGTGAAGTGACTTGAAATGTCTGCATGGCTCACGTACGTTGGGCAAAT
CACAACCCGTCGCGAAAAAATCACGATCGCCTTTTTCCCCACCCAGCGAC
GGGGGACATTTGAGAAAAACGATTCGACTCTCGTAGTATCCATACATGGG
AGATCTCATATATGAATTTTGGAATGACGGACTTGAGGAGGCGAAAGTGA
TGGGGAGATGGAGAGGGAGGGAGGGAGGGAAAGAAGGAAGACGAAGCTCA
ACTGACAAGAATTATGGTCATCCACCCTCCCTCCCTCCCTCCCTCCCTCC
CTTCCTCCCTTCCTCCCTCCCTCCAAGCGCTCTCTCCACCATTGGCTTGG
CAAGGCTTCACGAGTTGACTTACCTATCCCTCCTTCCCTATCCATTCGCC
ATGTTTCGTGGGCGGATCATGCGGCCCATGCATAGTGGACGAGCGCTTCC
GCAAATAATTATGCTGAGGAATGGTAAGTTTGTTGAGTACGTGTGCTTGG
TGGTGTGTGCTTGGTGGTCCTCATCCCACGAGGCGTCGAGGCATCCGGTA
GTTGATGGGAAAGTCCGCGTGAAGGAGCGGGGGGAGACCGGGGGCTAGAA
GTCGTACAACGGGCTCACGTGCCCTCCTGCCCAGATCACCTACGACAAGC
CCCTCAAGG
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protein sequence of jgi.p|Nanoce1779_2|231687

>mRNA_175-protein ID=mRNA_175-protein|Name=jgi.p|Nanoce1779_2|231687|organism=Nannochloropsis oceanica|type=polypeptide|length=151bp
MGDLIYEFWNDGLEEAKVMGRWRGREGGKEGRRSSTDKNYGHPPSLPPSL
PPFLPSSLPPSALSTIGLARLHELTYLSLLPYPFAMFRGRIMRPMHSGRA
LPQIIMLRNGKFVEYVCLVVCAWWSSSHEASRHPVVDGKVRVKERGETGG
*
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mRNA from alignment at scaffold_3:440715..441473+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_175 ID=mRNA_175|Name=jgi.p|Nanoce1779_2|231687|organism=Nannochloropsis oceanica|type=mRNA|length=759bp|location=Sequence derived from alignment at scaffold_3:440715..441473+ (Nannochloropsis oceanica)
GACCCAGGCACATTGTCACTGTCCGTCAAGGATTCCAAGGCTATATGCGG
CATGACAAACAAACAACAGTGCCAAATGGGTATCGTTGGACTGTAACAGT
TGCGTGAAGTGACTTGAAATGTCTGCATGGCTCACGTACGTTGGGCAAAT
CACAACCCGTCGCGAAAAAATCACGATCGCCTTTTTCCCCACCCAGCGAC
GGGGGACATTTGAGAAAAACGATTCGACTCTCGTAGTATCCATACATGGG
AGATCTCATATATGAATTTTGGAATGACGGACTTGAGGAGGCGAAAGTGA
TGGGGAGATGGAGAGGGAGGGAGGGAGGGAAAGAAGGAAGACGAAGCTCA
ACTGACAAGAATTATGGTCATCCACCCTCCCTCCCTCCCTCCCTCCCTCC
CTTCCTCCCTTCCTCCCTCCCTCCAAGCGCTCTCTCCACCATTGGCTTGG
CAAGGCTTCACGAGTTGACTTACCTATCCCTCCTTCCCTATCCATTCGCC
ATGTTTCGTGGGCGGATCATGCGGCCCATGCATAGTGGACGAGCGCTTCC
GCAAATAATTATGCTGAGGAATGGTAAGTTTGTTGAGTACGTGTGCTTGG
TGGTGTGTGCTTGGTGGTCCTCATCCCACGAGGCGTCGAGGCATCCGGTA
GTTGATGGGAAAGTCCGCGTGAAGGAGCGGGGGGAGACCGGGGGCTAGAA
GTCGTACAACGGGCTCACGTGCCCTCCTGCCCAGATCACCTACGACAAGC
CCCTCAAGG
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Coding sequence (CDS) from alignment at scaffold_3:440715..441473+

>mRNA_175 ID=mRNA_175|Name=jgi.p|Nanoce1779_2|231687|organism=Nannochloropsis oceanica|type=CDS|length=453bp|location=Sequence derived from alignment at scaffold_3:440715..441473+ (Nannochloropsis oceanica)
ATGGGAGATCTCATATATGAATTTTGGAATGACGGACTTGAGGAGGCGAA
AGTGATGGGGAGATGGAGAGGGAGGGAGGGAGGGAAAGAAGGAAGACGAA
GCTCAACTGACAAGAATTATGGTCATCCACCCTCCCTCCCTCCCTCCCTC
CCTCCCTTCCTCCCTTCCTCCCTCCCTCCAAGCGCTCTCTCCACCATTGG
CTTGGCAAGGCTTCACGAGTTGACTTACCTATCCCTCCTTCCCTATCCAT
TCGCCATGTTTCGTGGGCGGATCATGCGGCCCATGCATAGTGGACGAGCG
CTTCCGCAAATAATTATGCTGAGGAATGGTAAGTTTGTTGAGTACGTGTG
CTTGGTGGTGTGTGCTTGGTGGTCCTCATCCCACGAGGCGTCGAGGCATC
CGGTAGTTGATGGGAAAGTCCGCGTGAAGGAGCGGGGGGAGACCGGGGGC
TAG
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Synonyms
Publications