jgi.p|Nanoce1779_2|573305, mRNA_1749 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|573305
Unique NamemRNA_1749
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length498
Alignment locationscaffold_1:1394779..1395276 +

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Properties
Property NameValue
TranscriptId573391
TrackFilteredModels2
ProteinId573305
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:1394779..1395276 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573305gene_1749Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573305mRNA_1749-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1749CDS_1749Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1749 ID=mRNA_1749|Name=jgi.p|Nanoce1779_2|573305|organism=Nannochloropsis oceanica|type=mRNA|length=498bp
TGTGCTGGTTTCTCAATATTTTCTTTCACTTATGCGTGTGCTCTGGTGTA
TTTTGCTGTGGTGCGTCTCCGGCGTGTCTTGTTTAGAGCGCCGATGCACG
ACGGCTACCGTCGTGAGGACAGAGACATGGAAAAGGGGCTGGAGGCCACA
TGAATACCACAAGGACGCGGACGGATATCTCGGTCACTGCAATGTGAGAG
CAAATGAGAGAAGCGTTGCTTATTGCTCTATCATTCCCACTTTTCTTTCT
CTTGAATCTCTACAGGACGAATGCTTGTGGCTTCGGCGCTGCCGACGTAC
TACGTCCACCTCCTTTTGATGTGTCAAAACTGAGTCCAACGTTTGTGAAA
GAATATGAAGAACTTCTTCTCGTGCTATCTTCCTCTAATTCAACAAGTGT
AAGAGGTTTATAAGCTTCTTGTACATCGTTCCTAGCCCATGTTTGTGAGG
AATAGGGTTCTTATCACCGATACGATGAAAACGGTTTTTCAAAACGAG
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protein sequence of jgi.p|Nanoce1779_2|573305

>mRNA_1749-protein ID=mRNA_1749-protein|Name=jgi.p|Nanoce1779_2|573305|organism=Nannochloropsis oceanica|type=polypeptide|length=96bp
MRVLWCILLWCVSGVSCLERRCTTATVVRTETWKRGWRPHEYHKDADGYL
GHCNVRANERSVAYCSIIPTFLSLESLQDECLWLRRCRRTTSTSF*
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mRNA from alignment at scaffold_1:1394779..1395276+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1749 ID=mRNA_1749|Name=jgi.p|Nanoce1779_2|573305|organism=Nannochloropsis oceanica|type=mRNA|length=498bp|location=Sequence derived from alignment at scaffold_1:1394779..1395276+ (Nannochloropsis oceanica)
TGTGCTGGTTTCTCAATATTTTCTTTCACTTATGCGTGTGCTCTGGTGTA
TTTTGCTGTGGTGCGTCTCCGGCGTGTCTTGTTTAGAGCGCCGATGCACG
ACGGCTACCGTCGTGAGGACAGAGACATGGAAAAGGGGCTGGAGGCCACA
TGAATACCACAAGGACGCGGACGGATATCTCGGTCACTGCAATGTGAGAG
CAAATGAGAGAAGCGTTGCTTATTGCTCTATCATTCCCACTTTTCTTTCT
CTTGAATCTCTACAGGACGAATGCTTGTGGCTTCGGCGCTGCCGACGTAC
TACGTCCACCTCCTTTTGATGTGTCAAAACTGAGTCCAACGTTTGTGAAA
GAATATGAAGAACTTCTTCTCGTGCTATCTTCCTCTAATTCAACAAGTGT
AAGAGGTTTATAAGCTTCTTGTACATCGTTCCTAGCCCATGTTTGTGAGG
AATAGGGTTCTTATCACCGATACGATGAAAACGGTTTTTCAAAACGAG
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Coding sequence (CDS) from alignment at scaffold_1:1394779..1395276+

>mRNA_1749 ID=mRNA_1749|Name=jgi.p|Nanoce1779_2|573305|organism=Nannochloropsis oceanica|type=CDS|length=288bp|location=Sequence derived from alignment at scaffold_1:1394779..1395276+ (Nannochloropsis oceanica)
ATGCGTGTGCTCTGGTGTATTTTGCTGTGGTGCGTCTCCGGCGTGTCTTG
TTTAGAGCGCCGATGCACGACGGCTACCGTCGTGAGGACAGAGACATGGA
AAAGGGGCTGGAGGCCACATGAATACCACAAGGACGCGGACGGATATCTC
GGTCACTGCAATGTGAGAGCAAATGAGAGAAGCGTTGCTTATTGCTCTAT
CATTCCCACTTTTCTTTCTCTTGAATCTCTACAGGACGAATGCTTGTGGC
TTCGGCGCTGCCGACGTACTACGTCCACCTCCTTTTGA
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Synonyms
Publications