jgi.p|Nanoce1779_2|16220, mRNA_1748 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|16220
Unique Name	mRNA_1748
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	927
Alignment location	scaffold_1:1392436..1394118 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	16306
Track	FilteredModels2
ProteinId	16220

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:1392436..1394118 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|16220	gene_1748	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|16220	mRNA_1748-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1748	CDS_1748	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:1392436..1394118+
coding sequence from alignment at scaffold_1:1392436..1394118+

mRNA sequence

>mRNA_1748 ID=mRNA_1748|Name=jgi.p|Nanoce1779_2|16220|organism=Nannochloropsis oceanica|type=mRNA|length=927bp
AAAGCTTAATATTACCATTGACCTGACATTCCATCCCTCCCTCCCTCAGA
TGTGCACGTGGACGCCATGGACGTGGCAGGAGACAATCAGATGCAGGTCG
AGCACAACATGTTGAAGCAGCGACTGTCGGCAGAGGGGCAGCCCATCGGT
TTTCCCTTTCTGGAGGACCCCACCGACTTTGAGAGCAAAAGGGCGGGCGC
GCTCGCGGCTGCCTCTCCCTCGGACTACTGTGGATCCTGCTTCGACGCCT
CCACCGCCCGTGGCAAGGATAAAGGTGCTTCTCCCTCGTGCTGCAATTCG
TGCGAGGACGTCCTGGCGGCGTATCGATCGCAGCGTTTGGCCCTGGGGAG
GATCAAGAGCACCGCCCCCCAGTGCCAGCCCGGCTTCAAAGTCCCTGTCT
CTGTAGGGCCTATGCAGAAGGGCGAGGGATGCAACCTCAACGGCTTCATG
TCCGTTAACAAGGTGGCAGGCAACTTTCACATCGCCTTTGGAGACTCGGT
CGTCAAGGATGGCCGACACATACACCAATTCATTCCATCCGAGGCCCCCT
TCTTCAACGTCTCCCACTCCATCTCCCACATCTCTTTTGGGGACGAGTAC
CCTGGGCGCGTCAACCCCCTCGATGGGAAGGTCAAGTACGTGAGCCAAGA
ATTGGGCACGGGCCTGTTCCAGTACTTCATCAAGGTCAGGAATTAAAAGT
GACAAGGAGGGGAAAGGGAAGGAGGAAGGGAAGGAGATAGAGATAGAGAG
ATTCCAATAAGGTAAAACGCCCGTCCCACATGCACTCATCCATCTTCCCC
TTCCTCCTTTCCTCCCTCGCCACCTCGCGCTAGGTCATCCCTACCAACTA
CAAAGGCCGGAAGGGTAATGTCATCCGAACCAATCGCATCAGTGTCACAG
AGCGCTTTAAGCCCCTTCATAAGGAAG

protein sequence of jgi.p|Nanoce1779_2|16220

>mRNA_1748-protein ID=mRNA_1748-protein|Name=jgi.p|Nanoce1779_2|16220|organism=Nannochloropsis oceanica|type=polypeptide|length=210bp
MDVAGDNQMQVEHNMLKQRLSAEGQPIGFPFLEDPTDFESKRAGALAAAS
PSDYCGSCFDASTARGKDKGASPSCCNSCEDVLAAYRSQRLALGRIKSTA
PQCQPGFKVPVSVGPMQKGEGCNLNGFMSVNKVAGNFHIAFGDSVVKDGR
HIHQFIPSEAPFFNVSHSISHISFGDEYPGRVNPLDGKVKYVSQELGTGL
FQYFIKVRN*

mRNA from alignment at scaffold_1:1392436..1394118+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1748 ID=mRNA_1748|Name=jgi.p|Nanoce1779_2|16220|organism=Nannochloropsis oceanica|type=mRNA|length=1683bp|location=Sequence derived from alignment at scaffold_1:1392436..1394118+ (Nannochloropsis oceanica)
AAAGCTTAATATTACCATTGACCTGACATTCCATGCCTTGACCTGCGCTG
GTGAGGAGGGAGGGAGGAAGGAAGGGAGGGAGGGAGGGAGGGAGGGAAGG
GTAGAGAAGACGGAGATCTGTCGCTCTCTTGGCGAAGGGCGAAGGATTAG
TTCTCACCTCCCCCCCTCCCTCCCCCCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCAGATGTGCACGTGGACGCCATGGACGTGGCAGGAGAC
AATCAGATGCAGGTCGAGCACAACATGTTGAAGCAGCGACTGTCGGCAGA
GGGGCAGCCCATCGGGTATGGGAGGGAGGGGAGGAGGGGAGGGAGGAAAG
GACTGGACTGAGTGCGAAAGCGCATTTCCAATCAATTATCACATCTTCGC
TCCACGTGTCCTCTTCCTCCCTTTTATCCTTCCTCCCTTCCTCCCTCAGT
TTTCCCTTTCTGGAGGACCCCACCGACTTTGAGAGCAAAAGGGCGGGCGC
GCTCGCGGCTGCCTCTCCCTCGGACTACTGTGGATCCTGCTTCGACGCCT
CCACCGCCCGTGGCAAGGATAAAGGTGCTTCTCCCTCGTGCTGCAATTCG
TGCGAGGACGTCCTGGCGGCGTATCGATCGCAGCGTTTGGCCCTGGGGAG
GATCAAGTGAGCAAGGGAGGGGGGGAGAGGAGAAGAAAGGGCGAGGGAGG
GAGGGAAGGAGCCGTGTCTTTCGTTGGGACATCACGCCGAGGTGAAGCAA
CGGCAGCCTCTTCTCAAATCCCCTCCCCTCCCCTCCCCTCCCTTCCTCTC
ACAGGAGCACCGCCCCCCAGTGCCAGCCCGGCTTCAAAGTCCCTGTCTCT
GTAGGGCCTATGCAGAAGGGCGAGGGATGCAACCTCAACGGCTTCATGTC
CGTTAACAAGGTGGCAGGCAACTTTCACATCGCCTTTGGAGACTCGGTCG
TCAAGGTACATGCGTGTCCCTCTCCCTCCCTCCCTCCTCCCCTCCCTCCC
GCCCTCCCTCCTCTCCCTTCTCTTTGGTGACTCTGGTTGACCTCTCCCTC
CCTCCCTTCCTCCTTTCCTGTATCAGGATGGCCGACACATACACCAATTC
ATTCCATCCGAGGCCCCCTTCTTCAACGTCTCCCACTCCATCTCCCACAT
CTCTTTTGGGGACGAGTACCCTGGGCGCGTCAACCCCCTCGATGGGAAGG
TCAAGGTAGGGAGGGAGGGAGGAAAGGAGGGAAGGAGGGAGGGAGGAAAA
GAGGGAGGGAGGGAAGGACAAAGGGTAGCTCCACGAGATACACAGACAGA
TTTGCGTTCAGACGACCCTTCATGTTATTCACATTCTCACCTACCTACCT
ACCTACCTACCTACCTCCCTCCCTCCCTCCCTCCCTCCCTAGTACGTGAG
CCAAGAATTGGGCACGGGCCTGTTCCAGTACTTCATCAAGGTCAGGAATT
AAAAGTGACAAGGAGGGGAAAGGGAAGGAGGAAGGGAAGGAGATAGAGAT
AGAGAGATTCCAATAAGGTAAAACGCCCGTCCCACATGCACTCATCCATC
TTCCCCTTCCTCCTTTCCTCCCTCGCCACCTCGCGCTAGGTCATCCCTAC
CAACTACAAAGGCCGGAAGGGTAATGTCATCCGAACCAATCGCATCAGTG
TCACAGAGCGCTTTAAGCCCCTTCATAAGGAAG

Coding sequence (CDS) from alignment at scaffold_1:1392436..1394118+

>mRNA_1748 ID=mRNA_1748|Name=jgi.p|Nanoce1779_2|16220|organism=Nannochloropsis oceanica|type=CDS|length=3150bp|location=Sequence derived from alignment at scaffold_1:1392436..1394118+ (Nannochloropsis oceanica)
ATGGACGTGGCAGGAGACAATCAGATGCAGGTCGAGCACAACATGTTGAA
GCAGCGACTGTCGGCAGAGGGGCAGCCCATCGGTTTTCCCTTTCTGGAGG
ACCCCACCGACTTTGAGAGCAAAAGGGCGGGCGCGCTCGCGGCTGCCTCT
CCCTCGGACTACTGTGGATCCTGCTTCGACGCCTCCACCGCCCGTGGCAA
GGATAAAGGTGCTTCTCCCTCGTGCTGCAATTCGTGCGAGGACGTCCTGG
CGGCGTATCGATCGCAGCGTTTGGCCCTGGGGAGGATCAAGAGCACCGCC
CCCCAGTGCCAGCCCGGCTTCAAAGTCCCTGTCTCTGTAGGGCCTATGCA
GAAGGGCGAGGGATGCAACCTCAACGGCTTCATGTCCGTTAACAAGGTGG
CAGGCAACTTTCACATCGCCTTTGGAGACTCGGTCGTCAAGGATGGCCGA
CACATACACCAATTCATTCCATCCGAGGCCCCCTTCTTCAACGTCTCCCA
CTCCATCTCCCACATCTCTTTTGGGGACGAGTACCCTGGGCGCGTCAACC
CCCTCGATGGGAAGGTCAAGTACGTGAGCCAAGAATTGGGCACGGGCCTG
TTCCAGTACTTCATCAAGGTCAGGAATTAAATGGACGTGGCAGGAGACAA
TCAGATGCAGGTCGAGCACAACATGTTGAAGCAGCGACTGTCGGCAGAGG
GGCAGCCCATCGGTTTTCCCTTTCTGGAGGACCCCACCGACTTTGAGAGC
AAAAGGGCGGGCGCGCTCGCGGCTGCCTCTCCCTCGGACTACTGTGGATC
CTGCTTCGACGCCTCCACCGCCCGTGGCAAGGATAAAGGTGCTTCTCCCT
CGTGCTGCAATTCGTGCGAGGACGTCCTGGCGGCGTATCGATCGCAGCGT
TTGGCCCTGGGGAGGATCAAGAGCACCGCCCCCCAGTGCCAGCCCGGCTT
CAAAGTCCCTGTCTCTGTAGGGCCTATGCAGAAGGGCGAGGGATGCAACC
TCAACGGCTTCATGTCCGTTAACAAGGTGGCAGGCAACTTTCACATCGCC
TTTGGAGACTCGGTCGTCAAGGATGGCCGACACATACACCAATTCATTCC
ATCCGAGGCCCCCTTCTTCAACGTCTCCCACTCCATCTCCCACATCTCTT
TTGGGGACGAGTACCCTGGGCGCGTCAACCCCCTCGATGGGAAGGTCAAG
TACGTGAGCCAAGAATTGGGCACGGGCCTGTTCCAGTACTTCATCAAGGT
CAGGAATTAAATGGACGTGGCAGGAGACAATCAGATGCAGGTCGAGCACA
ACATGTTGAAGCAGCGACTGTCGGCAGAGGGGCAGCCCATCGGTTTTCCC
TTTCTGGAGGACCCCACCGACTTTGAGAGCAAAAGGGCGGGCGCGCTCGC
GGCTGCCTCTCCCTCGGACTACTGTGGATCCTGCTTCGACGCCTCCACCG
CCCGTGGCAAGGATAAAGGTGCTTCTCCCTCGTGCTGCAATTCGTGCGAG
GACGTCCTGGCGGCGTATCGATCGCAGCGTTTGGCCCTGGGGAGGATCAA
GAGCACCGCCCCCCAGTGCCAGCCCGGCTTCAAAGTCCCTGTCTCTGTAG
GGCCTATGCAGAAGGGCGAGGGATGCAACCTCAACGGCTTCATGTCCGTT
AACAAGGTGGCAGGCAACTTTCACATCGCCTTTGGAGACTCGGTCGTCAA
GGATGGCCGACACATACACCAATTCATTCCATCCGAGGCCCCCTTCTTCA
ACGTCTCCCACTCCATCTCCCACATCTCTTTTGGGGACGAGTACCCTGGG
CGCGTCAACCCCCTCGATGGGAAGGTCAAGTACGTGAGCCAAGAATTGGG
CACGGGCCTGTTCCAGTACTTCATCAAGGTCAGGAATTAAATGGACGTGG
CAGGAGACAATCAGATGCAGGTCGAGCACAACATGTTGAAGCAGCGACTG
TCGGCAGAGGGGCAGCCCATCGGTTTTCCCTTTCTGGAGGACCCCACCGA
CTTTGAGAGCAAAAGGGCGGGCGCGCTCGCGGCTGCCTCTCCCTCGGACT
ACTGTGGATCCTGCTTCGACGCCTCCACCGCCCGTGGCAAGGATAAAGGT
GCTTCTCCCTCGTGCTGCAATTCGTGCGAGGACGTCCTGGCGGCGTATCG
ATCGCAGCGTTTGGCCCTGGGGAGGATCAAGAGCACCGCCCCCCAGTGCC
AGCCCGGCTTCAAAGTCCCTGTCTCTGTAGGGCCTATGCAGAAGGGCGAG
GGATGCAACCTCAACGGCTTCATGTCCGTTAACAAGGTGGCAGGCAACTT
TCACATCGCCTTTGGAGACTCGGTCGTCAAGGATGGCCGACACATACACC
AATTCATTCCATCCGAGGCCCCCTTCTTCAACGTCTCCCACTCCATCTCC
CACATCTCTTTTGGGGACGAGTACCCTGGGCGCGTCAACCCCCTCGATGG
GAAGGTCAAGTACGTGAGCCAAGAATTGGGCACGGGCCTGTTCCAGTACT
TCATCAAGGTCAGGAATTAAATGGACGTGGCAGGAGACAATCAGATGCAG
GTCGAGCACAACATGTTGAAGCAGCGACTGTCGGCAGAGGGGCAGCCCAT
CGGTTTTCCCTTTCTGGAGGACCCCACCGACTTTGAGAGCAAAAGGGCGG
GCGCGCTCGCGGCTGCCTCTCCCTCGGACTACTGTGGATCCTGCTTCGAC
GCCTCCACCGCCCGTGGCAAGGATAAAGGTGCTTCTCCCTCGTGCTGCAA
TTCGTGCGAGGACGTCCTGGCGGCGTATCGATCGCAGCGTTTGGCCCTGG
GGAGGATCAAGAGCACCGCCCCCCAGTGCCAGCCCGGCTTCAAAGTCCCT
GTCTCTGTAGGGCCTATGCAGAAGGGCGAGGGATGCAACCTCAACGGCTT
CATGTCCGTTAACAAGGTGGCAGGCAACTTTCACATCGCCTTTGGAGACT
CGGTCGTCAAGGATGGCCGACACATACACCAATTCATTCCATCCGAGGCC
CCCTTCTTCAACGTCTCCCACTCCATCTCCCACATCTCTTTTGGGGACGA
GTACCCTGGGCGCGTCAACCCCCTCGATGGGAAGGTCAAGTACGTGAGCC
AAGAATTGGGCACGGGCCTGTTCCAGTACTTCATCAAGGTCAGGAATTAA

Synonyms

Publications