jgi.p|Nanoce1779_2|573298, mRNA_1747 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|573298
Unique NamemRNA_1747
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length602
Alignment locationscaffold_1:1390709..1391310 +

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Properties
Property NameValue
TranscriptId573384
TrackFilteredModels2
ProteinId573298
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:1390709..1391310 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573298gene_1747Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573298mRNA_1747-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1747CDS_1747Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1747 ID=mRNA_1747|Name=jgi.p|Nanoce1779_2|573298|organism=Nannochloropsis oceanica|type=mRNA|length=602bp
CGCATACCTGGTACTGGTGGTGGTGGTGCTGCTGGTGGTGGTGGTGGTGG
GGGCAGTAAGGGGGGAATGCCTGCTGCGGCCGCGTACGCCAGCAGCAGCA
CCACCAGTACCACCAGCACCACCAGTAGCATCGACAAGGCGCTGACCAAG
CCGAGGTTAGATCGTTCATTGCCTACAGTTGTGATTAATGAACGAAGAAT
GAAGAAGGCGGCGGCGTTGAAAGTGACGGAGGTTCCTTATCCTTTCACTT
CCAAGGAGCAGTACGAAAGGAGTTTGAGGCGGCCAGTGGGCAAGGAGTGG
AACACGGCTTTGGCTGTGCGGGAGATGACACGGCCAGCTGTGAAGGTGAG
GGCAGGTGTGATGGTACAACCGATAAAATTGCGCAAGACGCATCGGGCGG
TGTTTTCGGGGTAGGTTTTGTATGGTGTGTGAGAGATTGGGATGGGGATG
TTGGAGAAAAGGGGAAGGTACAGAGGCGAAAAGAGAAAGAGAGCGGTGAT
GAGGGACTGGACAAAAAAATAGAGAGCGAAAGCATAAGATATCTAAGTGA
ACGGGCCAAAACTTGCCGGGGGAGAGGAACAGAAGAAACCTGTGCTTGTT
AT
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protein sequence of jgi.p|Nanoce1779_2|573298

>mRNA_1747-protein ID=mRNA_1747-protein|Name=jgi.p|Nanoce1779_2|573298|organism=Nannochloropsis oceanica|type=polypeptide|length=116bp
MPAAAAYASSSTTSTTSTTSSIDKALTKPRLDRSLPTVVINERRMKKAAA
LKVTEVPYPFTSKEQYERSLRRPVGKEWNTALAVREMTRPAVKVRAGVMV
QPIKLRKTHRAVFSG*
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mRNA from alignment at scaffold_1:1390709..1391310+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1747 ID=mRNA_1747|Name=jgi.p|Nanoce1779_2|573298|organism=Nannochloropsis oceanica|type=mRNA|length=602bp|location=Sequence derived from alignment at scaffold_1:1390709..1391310+ (Nannochloropsis oceanica)
CGCATACCTGGTACTGGTGGTGGTGGTGCTGCTGGTGGTGGTGGTGGTGG
GGGCAGTAAGGGGGGAATGCCTGCTGCGGCCGCGTACGCCAGCAGCAGCA
CCACCAGTACCACCAGCACCACCAGTAGCATCGACAAGGCGCTGACCAAG
CCGAGGTTAGATCGTTCATTGCCTACAGTTGTGATTAATGAACGAAGAAT
GAAGAAGGCGGCGGCGTTGAAAGTGACGGAGGTTCCTTATCCTTTCACTT
CCAAGGAGCAGTACGAAAGGAGTTTGAGGCGGCCAGTGGGCAAGGAGTGG
AACACGGCTTTGGCTGTGCGGGAGATGACACGGCCAGCTGTGAAGGTGAG
GGCAGGTGTGATGGTACAACCGATAAAATTGCGCAAGACGCATCGGGCGG
TGTTTTCGGGGTAGGTTTTGTATGGTGTGTGAGAGATTGGGATGGGGATG
TTGGAGAAAAGGGGAAGGTACAGAGGCGAAAAGAGAAAGAGAGCGGTGAT
GAGGGACTGGACAAAAAAATAGAGAGCGAAAGCATAAGATATCTAAGTGA
ACGGGCCAAAACTTGCCGGGGGAGAGGAACAGAAGAAACCTGTGCTTGTT
AT
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Coding sequence (CDS) from alignment at scaffold_1:1390709..1391310+

>mRNA_1747 ID=mRNA_1747|Name=jgi.p|Nanoce1779_2|573298|organism=Nannochloropsis oceanica|type=CDS|length=348bp|location=Sequence derived from alignment at scaffold_1:1390709..1391310+ (Nannochloropsis oceanica)
ATGCCTGCTGCGGCCGCGTACGCCAGCAGCAGCACCACCAGTACCACCAG
CACCACCAGTAGCATCGACAAGGCGCTGACCAAGCCGAGGTTAGATCGTT
CATTGCCTACAGTTGTGATTAATGAACGAAGAATGAAGAAGGCGGCGGCG
TTGAAAGTGACGGAGGTTCCTTATCCTTTCACTTCCAAGGAGCAGTACGA
AAGGAGTTTGAGGCGGCCAGTGGGCAAGGAGTGGAACACGGCTTTGGCTG
TGCGGGAGATGACACGGCCAGCTGTGAAGGTGAGGGCAGGTGTGATGGTA
CAACCGATAAAATTGCGCAAGACGCATCGGGCGGTGTTTTCGGGGTAG
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Synonyms
Publications