jgi.p|Nanoce1779_2|573296, mRNA_1746 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|573296
Unique NamemRNA_1746
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length379
Alignment locationscaffold_1:1390089..1390467 -

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Properties
Property NameValue
TranscriptId573382
TrackFilteredModels2
ProteinId573296
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:1390089..1390467 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573296gene_1746Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573296mRNA_1746-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1746CDS_1746Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1746 ID=mRNA_1746|Name=jgi.p|Nanoce1779_2|573296|organism=Nannochloropsis oceanica|type=mRNA|length=379bp
TTCGTATGGACCAGCCGGCCTTGCGAAGCCGTGGCATTAACATCGTCCTC
CTCCTCGTCCTCCTCCTCGCCCTCAGCTCCCGCAATCATGGAAGAGGAAC
CACCCTTACCCTTCCCTCCCCTCTTTCCCCTCTTCCTCTTACCCCCTGTA
GTGGTGGTGGTGCCAGTTGCACTCTCTTCCACCATATCCTCCTCCCCGCC
GTCCACCTCCTGCATCACTGCCTCCACCGCCCGCTGGACATCCAGCAGAC
TCCTGCTGCTGCTGCTGCTGCTGGTACTGCTCCGGCGTGTTCGCCGCTTC
CCCGCCGCGCCCTCACTCGCTGACCGGAAACTCCCTTGTGCCACCATCCA
GGGATTCGAATCTCCCTCCTCCTCCTCCT
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protein sequence of jgi.p|Nanoce1779_2|573296

>mRNA_1746-protein ID=mRNA_1746-protein|Name=jgi.p|Nanoce1779_2|573296|organism=Nannochloropsis oceanica|type=polypeptide|length=106bp
MDQPALRSRGINIVLLLVLLLALSSRNHGRGTTLTLPSPLSPLPLTPCSG
GGASCTLFHHILLPAVHLLHHCLHRPLDIQQTPAAAAAAGTAPACSPLPR
RALTR*
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mRNA from alignment at scaffold_1:1390089..1390467-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1746 ID=mRNA_1746|Name=jgi.p|Nanoce1779_2|573296|organism=Nannochloropsis oceanica|type=mRNA|length=379bp|location=Sequence derived from alignment at scaffold_1:1390089..1390467- (Nannochloropsis oceanica)
TTCGTATGGACCAGCCGGCCTTGCGAAGCCGTGGCATTAACATCGTCCTC
CTCCTCGTCCTCCTCCTCGCCCTCAGCTCCCGCAATCATGGAAGAGGAAC
CACCCTTACCCTTCCCTCCCCTCTTTCCCCTCTTCCTCTTACCCCCTGTA
GTGGTGGTGGTGCCAGTTGCACTCTCTTCCACCATATCCTCCTCCCCGCC
GTCCACCTCCTGCATCACTGCCTCCACCGCCCGCTGGACATCCAGCAGAC
TCCTGCTGCTGCTGCTGCTGCTGGTACTGCTCCGGCGTGTTCGCCGCTTC
CCCGCCGCGCCCTCACTCGCTGACCGGAAACTCCCTTGTGCCACCATCCA
GGGATTCGAATCTCCCTCCTCCTCCTCCT
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Coding sequence (CDS) from alignment at scaffold_1:1390089..1390467-

>mRNA_1746 ID=mRNA_1746|Name=jgi.p|Nanoce1779_2|573296|organism=Nannochloropsis oceanica|type=CDS|length=318bp|location=Sequence derived from alignment at scaffold_1:1390089..1390467- (Nannochloropsis oceanica)
ATGGACCAGCCGGCCTTGCGAAGCCGTGGCATTAACATCGTCCTCCTCCT
CGTCCTCCTCCTCGCCCTCAGCTCCCGCAATCATGGAAGAGGAACCACCC
TTACCCTTCCCTCCCCTCTTTCCCCTCTTCCTCTTACCCCCTGTAGTGGT
GGTGGTGCCAGTTGCACTCTCTTCCACCATATCCTCCTCCCCGCCGTCCA
CCTCCTGCATCACTGCCTCCACCGCCCGCTGGACATCCAGCAGACTCCTG
CTGCTGCTGCTGCTGCTGGTACTGCTCCGGCGTGTTCGCCGCTTCCCCGC
CGCGCCCTCACTCGCTGA
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Synonyms
Publications