jgi.p|Nanoce1779_2|562473, mRNA_1744 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|562473
Unique Name	mRNA_1744
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1137
Alignment location	scaffold_1:1380343..1382196 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	562559
Track	FilteredModels2
ProteinId	562473

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:1380343..1382196 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|562473	gene_1744	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|562473	mRNA_1744-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1744	CDS_1744	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:1380343..1382196+
coding sequence from alignment at scaffold_1:1380343..1382196+

mRNA sequence

>mRNA_1744 ID=mRNA_1744|Name=jgi.p|Nanoce1779_2|562473|organism=Nannochloropsis oceanica|type=mRNA|length=1137bp
ATGGAGGATATTCAACGCGAAATTGATATCCTTTCCCACTGCAATTGTCC
GCAATTAACCCGCTATTTTGCTTCGTACGTCGTCGAGCATTCTCTCTGGA
TCGTTATGGAGTATGTAGATGGAGGATCTCTGGGGGAGCTCCTGGCCCTT
ACCCCCCACGGCCGCTTAGGTGAAGTGGCGATCGCTGGGGCCATGAGCCA
GCTATGCCAGGCTTTGGCCTACCTGCACGGAGAGAGGAAAATCCATCGGG
ACGTGAAAGCAAAAAACGTCCTCGTCTCCTCAACCGGTCTGGTGAAGCTT
GCCGATTTCGGCGTGACTGCCTCGTTGACGGAGACCATGGGAAAGCGACA
AACCTTTGCCGGGACGCCGTTTTGGATGGCGCCTGAGGTGATTTCTCAGA
CCTCATATGACTTCAAAGCGGACGTCTGGAGTCTGGGGATAACGGCGATG
GAACTGGCGAAGGGGGCTCCGCCCTATGCGAAGGTCCACCCCGTCCGGGC
CTTGTTTTTAATTCCGAAGAACCCGCCGCCACGGTTGGAGGATGAGGAGG
AGGGCTCGGGAGAGGGAAGGTGGTCGGAGGGGTTCAAGGAGTTTGTGGCG
GCGTGTTTGAGGAAGGATCCCGCGGAGAGACTGACGGCGGGGGAGTTGTC
GTTGTTGCCGTTCTTGGATGACGAGGGGAGGGTGGAAGAAGGAAGGGAGC
AGCTGGTGGCGTTGGTGAAGAGGCGAGTGCCTTCCCAGAGGTTGGAGCGG
GAGGAGATGCTGCTGGCGGAGGAGGAACAACAGCAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGTGGGAGGGAGGGAGGGAGGGGGGGAGGCCGAGCCGGC
ACATCCGGTCGCCGTATGCGAGTCCGGTGAGGAGGCAGGGAAGCACGGCG
TCATTGTCGTCGATGGGATCGGAGGGCAGGGAGAGTAGGAGAGAGAGCCC
GTGGGAGGAGCGAAGGAGGGAAAAGAGGGAGGACGGGGAGGACGGAGAGA
GCGGGGAGGAGGAGAGGGAGTATCACAACGAGATAGGGCCGGGGTCGGAG
GAAGAAGGGGAGGAAGAGGAGGAGCTTCAGTGGGACTTTACGGTCAAATC
AGCCGATGCCTTTTTGCCAGTTGCTGGAGCCATGTGA

protein sequence of jgi.p|Nanoce1779_2|562473

>mRNA_1744-protein ID=mRNA_1744-protein|Name=jgi.p|Nanoce1779_2|562473|organism=Nannochloropsis oceanica|type=polypeptide|length=379bp
MEDIQREIDILSHCNCPQLTRYFASYVVEHSLWIVMEYVDGGSLGELLAL
TPHGRLGEVAIAGAMSQLCQALAYLHGERKIHRDVKAKNVLVSSTGLVKL
ADFGVTASLTETMGKRQTFAGTPFWMAPEVISQTSYDFKADVWSLGITAM
ELAKGAPPYAKVHPVRALFLIPKNPPPRLEDEEEGSGEGRWSEGFKEFVA
ACLRKDPAERLTAGELSLLPFLDDEGRVEEGREQLVALVKRRVPSQRLER
EEMLLAEEEQQQEEEEEEEEEWEGGREGGRPSRHIRSPYASPVRRQGSTA
SLSSMGSEGRESRRESPWEERRREKREDGEDGESGEEEREYHNEIGPGSE
EEGEEEEELQWDFTVKSADAFLPVAGAM*

mRNA from alignment at scaffold_1:1380343..1382196+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1744 ID=mRNA_1744|Name=jgi.p|Nanoce1779_2|562473|organism=Nannochloropsis oceanica|type=mRNA|length=1854bp|location=Sequence derived from alignment at scaffold_1:1380343..1382196+ (Nannochloropsis oceanica)
ATGGAGGATATTCAACGCGAAATTGATATCCTTTCCCACTGCAATTGTCC
GCAATTAACCCGCTATTTTGCTTCGTACGTCGTCGAGCATTCTCTCTGGA
TCGTTATGGAGTATGTAGATGGAGGATCTCTGGGGGAGCTCCTGGCCCTT
ACCCCCCACGGCCGCTTAGGTGAAGTGGCGATCGCTGGGGCCATGAGCCA
GCTATGCCAGGCTTTGGCCTACCTGCACGGAGAGAGGAAAATCCATCGGG
ACGTGAAAGCAAAAAACGTCCTCGTCTCCTCAACCGGTCTGGTGAAGCTT
GCCGATTTCGGCGTGACTGCCTCGTTGACGGAGACCATGGGAAAGCGACA
AACCTTTGCCGGGACGCCGTTTTGGATGGCGCCTGAGGTGATTTCTCAGA
CCTCATATGACTTCAAAGCGGACGTCTGGAGTCTGGGGATAACGGCGATG
GAACTGGCGAAGGGGGCTCCGCCCTATGCGAAGGTCCACCCCGTCCGGGC
CTTGTTTTTAATTCCGAAGAACCCGCCGCCACGGTTGGAGGATGAGGAGG
AGGGCTCGGGAGAGGGAAGGTGGTCGGAGGGGTTCAAGGAGTTTGTGGCG
GCGTGTTTGAGGAAGGATCCCGCGGAGAGACTGACGGCGGGGGAGTTGTC
GTTGTTGCCGTTCTTGGATGACGAGGGGAGGGTGGAAGAAGGAAGGGAGC
AGCTGGTGGCGTTGGTGAAGAGGCGAGTGCCTTCCCAGAGGTTGGAGCGG
GAGGAGATGCTGCTGGCGGAGGAGGAACAACAGCAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGTGGGAGGGTAGGGGTGGGGAAGGGGAGAGGGTGGAGG
AGGGCAGGCCGGGGTGGGCGGAGGAGGAGGGGATAGGGAGGGGGGGCATT
CGCCGGGGTCCGACAAGTCGGATGATGGAGTTGACCTTGCACAGACAAGA
TACAGAGGACCGGAGTAGTAGTCGCAGCAGTAGCAGCAGCAGCGGCAACA
TCAGCAGAATCCGAATGTCCCACAGCGCCTCCTCTTCTCCTCGTGCATCC
CGGCCGGGTCAAGGGCAAGGATGGAGAGGGCAGCAACGGCGGAATCTAAA
AATTCTATCTTCCGCCCGAGCCGCCCTCGAAAGAGGCTCTGGCTCCTCAT
CCACTTCCTCCTCCACCGCCACCGCCACCCCCTCCCTCGCTTTTTCCCCC
ACTGGAGGAAGGCGCCGCCGCTCACACCTTCGGCGGGGATCGAGCGGATG
CCAAAGTCTCAGCAGTAGCATTAGCAGTAATAGTAGTGGCAGCAGCAACA
GCAGCAGTGGCAGTATCAACGACAACGCCGGCGGCACCACCAATAAAACT
GACAGCTTTTCTTCCCTGTCATCCCTGGACCGCCAAGCAGGGACCCCGCC
CATGGGCCGCCGTTGGGGATCGAATGGGGGAAAGGAAGGAGGGAAATGTA
AAGGAAGGGGGGGGGGAGGGAGAGGAAACGGTGATCGAGGAGGTTTTTTA
GCCCTTTCGAATTTAAATCCATCACTGCCACCGGGAGGAGGGAGGGAGGG
GGGGAGGCCGAGCCGGCACATCCGGTCGCCGTATGCGAGTCCGGTGAGGA
GGCAGGGAAGCACGGCGTCATTGTCGTCGATGGGATCGGAGGGCAGGGAG
AGTAGGAGAGAGAGCCCGTGGGAGGAGCGAAGGAGGGAAAAGAGGGAGGA
CGGGGAGGACGGAGAGAGCGGGGAGGAGGAGAGGGAGTATCACAACGAGA
TAGGGCCGGGGTCGGAGGAAGAAGGGGAGGAAGAGGAGGAGCTTCAGTGG
GACTTTACGGTCAAATCAGCCGATGCCTTTTTGCCAGTTGCTGGAGCCAT
GTGA

Coding sequence (CDS) from alignment at scaffold_1:1380343..1382196+

>mRNA_1744 ID=mRNA_1744|Name=jgi.p|Nanoce1779_2|562473|organism=Nannochloropsis oceanica|type=CDS|length=2274bp|location=Sequence derived from alignment at scaffold_1:1380343..1382196+ (Nannochloropsis oceanica)
ATGGAGGATATTCAACGCGAAATTGATATCCTTTCCCACTGCAATTGTCC
GCAATTAACCCGCTATTTTGCTTCGTACGTCGTCGAGCATTCTCTCTGGA
TCGTTATGGAGTATGTAGATGGAGGATCTCTGGGGGAGCTCCTGGCCCTT
ACCCCCCACGGCCGCTTAGGTGAAGTGGCGATCGCTGGGGCCATGAGCCA
GCTATGCCAGGCTTTGGCCTACCTGCACGGAGAGAGGAAAATCCATCGGG
ACGTGAAAGCAAAAAACGTCCTCGTCTCCTCAACCGGTCTGGTGAAGCTT
GCCGATTTCGGCGTGACTGCCTCGTTGACGGAGACCATGGGAAAGCGACA
AACCTTTGCCGGGACGCCGTTTTGGATGGCGCCTGAGGTGATTTCTCAGA
CCTCATATGACTTCAAAGCGGACGTCTGGAGTCTGGGGATAACGGCGATG
GAACTGGCGAAGGGGGCTCCGCCCTATGCGAAGGTCCACCCCGTCCGGGC
CTTGTTTTTAATTCCGAAGAACCCGCCGCCACGGTTGGAGGATGAGGAGG
AGGGCTCGGGAGAGGGAAGGTGGTCGGAGGGGTTCAAGGAGTTTGTGGCG
GCGTGTTTGAGGAAGGATCCCGCGGAGAGACTGACGGCGGGGGAGTTGTC
GTTGTTGCCGTTCTTGGATGACGAGGGGAGGGTGGAAGAAGGAAGGGAGC
AGCTGGTGGCGTTGGTGAAGAGGCGAGTGCCTTCCCAGAGGTTGGAGCGG
GAGGAGATGCTGCTGGCGGAGGAGGAACAACAGCAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGTGGGAGGGAGGGAGGGAGGGGGGGAGGCCGAGCCGGC
ACATCCGGTCGCCGTATGCGAGTCCGGTGAGGAGGCAGGGAAGCACGGCG
TCATTGTCGTCGATGGGATCGGAGGGCAGGGAGAGTAGGAGAGAGAGCCC
GTGGGAGGAGCGAAGGAGGGAAAAGAGGGAGGACGGGGAGGACGGAGAGA
GCGGGGAGGAGGAGAGGGAGTATCACAACGAGATAGGGCCGGGGTCGGAG
GAAGAAGGGGAGGAAGAGGAGGAGCTTCAGTGGGACTTTACGGTCAAATC
AGCCGATGCCTTTTTGCCAGTTGCTGGAGCCATGTGAATGGAGGATATTC
AACGCGAAATTGATATCCTTTCCCACTGCAATTGTCCGCAATTAACCCGC
TATTTTGCTTCGTACGTCGTCGAGCATTCTCTCTGGATCGTTATGGAGTA
TGTAGATGGAGGATCTCTGGGGGAGCTCCTGGCCCTTACCCCCCACGGCC
GCTTAGGTGAAGTGGCGATCGCTGGGGCCATGAGCCAGCTATGCCAGGCT
TTGGCCTACCTGCACGGAGAGAGGAAAATCCATCGGGACGTGAAAGCAAA
AAACGTCCTCGTCTCCTCAACCGGTCTGGTGAAGCTTGCCGATTTCGGCG
TGACTGCCTCGTTGACGGAGACCATGGGAAAGCGACAAACCTTTGCCGGG
ACGCCGTTTTGGATGGCGCCTGAGGTGATTTCTCAGACCTCATATGACTT
CAAAGCGGACGTCTGGAGTCTGGGGATAACGGCGATGGAACTGGCGAAGG
GGGCTCCGCCCTATGCGAAGGTCCACCCCGTCCGGGCCTTGTTTTTAATT
CCGAAGAACCCGCCGCCACGGTTGGAGGATGAGGAGGAGGGCTCGGGAGA
GGGAAGGTGGTCGGAGGGGTTCAAGGAGTTTGTGGCGGCGTGTTTGAGGA
AGGATCCCGCGGAGAGACTGACGGCGGGGGAGTTGTCGTTGTTGCCGTTC
TTGGATGACGAGGGGAGGGTGGAAGAAGGAAGGGAGCAGCTGGTGGCGTT
GGTGAAGAGGCGAGTGCCTTCCCAGAGGTTGGAGCGGGAGGAGATGCTGC
TGGCGGAGGAGGAACAACAGCAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
TGGGAGGGAGGGAGGGAGGGGGGGAGGCCGAGCCGGCACATCCGGTCGCC
GTATGCGAGTCCGGTGAGGAGGCAGGGAAGCACGGCGTCATTGTCGTCGA
TGGGATCGGAGGGCAGGGAGAGTAGGAGAGAGAGCCCGTGGGAGGAGCGA
AGGAGGGAAAAGAGGGAGGACGGGGAGGACGGAGAGAGCGGGGAGGAGGA
GAGGGAGTATCACAACGAGATAGGGCCGGGGTCGGAGGAAGAAGGGGAGG
AAGAGGAGGAGCTTCAGTGGGACTTTACGGTCAAATCAGCCGATGCCTTT
TTGCCAGTTGCTGGAGCCATGTGA

Synonyms

Publications