jgi.p|Nanoce1779_2|573285, mRNA_1743 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|573285
Unique NamemRNA_1743
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1447
Alignment locationscaffold_1:1377944..1379390 -

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Properties
Property NameValue
TranscriptId573371
TrackFilteredModels2
ProteinId573285
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:1377944..1379390 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573285gene_1743Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573285mRNA_1743-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1743CDS_1743Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1743 ID=mRNA_1743|Name=jgi.p|Nanoce1779_2|573285|organism=Nannochloropsis oceanica|type=mRNA|length=1447bp
ACAGGAAGTTGCCATTGGCTATTGAAACAAGCGTCCAGCCCGCCAGGCAG
CCATGATGAGGCGGTTGCGCCGCAAGACCTCCGACATGGAAGCGGCGCGC
ACTGCATCCTCGTCTTCACCCACCACCTCCGCCTCTACCTCGCCCGTGAA
GCGCCGTGGCAATGAGATGAAAAAATCTTCCGCCGGGCAAGACTTGGATG
CCCCCTCGTCCTCCGCTGCCCCCTCATTGTCTGCCTCGACCGGAAGTAGC
AGTACAACCAAGGCGGAGAAGCGTTCCATCAACTCTCCCCCTCATCACAA
ATCTCGTGCTAATAACACGGCAGAGTCCTGGTGGTGGCCCTGGAAGAATG
TTATTCTAGCCCTTGGTCTTGCCTTGATTCTGACTTTCACTGTTAAGGGC
TACGATGCATTTAATGACATGGAAGACAATGGCTTCGCTCTAGTGGCCGC
AACGGCGCCGGGTTCCCATTGGGGCAATTGGCGCAGCCTGACCCGATGTG
ATTGCAAGGCCTTTCAACAGTGCACCGATGCCTTGTCCAAGGCCAAGACC
CTGAAGGATACTCGCCTGGGTCGTTTTTTCCAGCTTGCCACCTGTAAGCT
GGCCACGGGACAGGACGAGGACTGTCAATTGAGGGACAAGGAGCTCAAGA
GTGGCTTAACCCGCTTTCGGTTCTTCGGGCCCGAGCTCGTGCTTCGTTTG
CGGCTGGCGGCGGATTTTAAGTGGTGGGTCCGGCTGGGTTGTTATTTCCT
CATGTGTTGCGCATTGCTTGAGATCCTCTTCTATTTGATTGAAACGACGC
AGTTGCGGTGGCAACGGAAGGGGGCCATGAAGCAAGAGGGCTCAAGGGAG
TGGTGGGAGAAGGAGGTATTGGTATGGTTGTTCCTGATAGGGTGGCACGA
GGTCTTGAGCTACGCAGTTCATTACGTGTATAATGACCAGCATACCATGT
GTGATGGGATCGGGTTGTTCTTTCGGGATGCCATGGCTCTGTACACTCTA
ATTCAAGTGGGCATGCGCGCTGTTGTCAAGCGCGGTCCGAATGCGCATCG
AGTGTGGCTCGTCCAAGCGGAGCAGAAGTACGCGGCTTTGCAGGGGAAGC
CACTATGGGTGCAGGTTGTGCGAGATCCCAGGATTGGGGCGTTTCATTTG
TTTAGCGGCCTGGAGCTGAAGGTGACTGAGGACCCGGTAGGGGTGATATC
CGGGCTCGTAAATACATTGTTGAGCGTGGCCGAGAGGGTGTTGAGGTATG
CGCCGCACGAGGTGCAGAAGCTTGTGGCGATGGTGCCATATTTGGGGGGG
AGGCTAGTGGTGCTGGGAGTCTCGGGGACTGTGCCGGGGCAAGTGGAAGG
GAGTAGTAGTAGAAGGAAGGATGAGTAAAAGAGGTGGGGGAGGGGTTGAC
GAGAGACCTCAACGAAAGAAGTGAAGTAAACAAAAAAATATACACGT
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protein sequence of jgi.p|Nanoce1779_2|573285

>mRNA_1743-protein ID=mRNA_1743-protein|Name=jgi.p|Nanoce1779_2|573285|organism=Nannochloropsis oceanica|type=polypeptide|length=440bp
MMRRLRRKTSDMEAARTASSSSPTTSASTSPVKRRGNEMKKSSAGQDLDA
PSSSAAPSLSASTGSSSTTKAEKRSINSPPHHKSRANNTAESWWWPWKNV
ILALGLALILTFTVKGYDAFNDMEDNGFALVAATAPGSHWGNWRSLTRCD
CKAFQQCTDALSKAKTLKDTRLGRFFQLATCKLATGQDEDCQLRDKELKS
GLTRFRFFGPELVLRLRLAADFKWWVRLGCYFLMCCALLEILFYLIETTQ
LRWQRKGAMKQEGSREWWEKEVLVWLFLIGWHEVLSYAVHYVYNDQHTMC
DGIGLFFRDAMALYTLIQVGMRAVVKRGPNAHRVWLVQAEQKYAALQGKP
LWVQVVRDPRIGAFHLFSGLELKVTEDPVGVISGLVNTLLSVAERVLRYA
PHEVQKLVAMVPYLGGRLVVLGVSGTVPGQVEGSSSRRKD
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mRNA from alignment at scaffold_1:1377944..1379390-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1743 ID=mRNA_1743|Name=jgi.p|Nanoce1779_2|573285|organism=Nannochloropsis oceanica|type=mRNA|length=1447bp|location=Sequence derived from alignment at scaffold_1:1377944..1379390- (Nannochloropsis oceanica)
ACAGGAAGTTGCCATTGGCTATTGAAACAAGCGTCCAGCCCGCCAGGCAG
CCATGATGAGGCGGTTGCGCCGCAAGACCTCCGACATGGAAGCGGCGCGC
ACTGCATCCTCGTCTTCACCCACCACCTCCGCCTCTACCTCGCCCGTGAA
GCGCCGTGGCAATGAGATGAAAAAATCTTCCGCCGGGCAAGACTTGGATG
CCCCCTCGTCCTCCGCTGCCCCCTCATTGTCTGCCTCGACCGGAAGTAGC
AGTACAACCAAGGCGGAGAAGCGTTCCATCAACTCTCCCCCTCATCACAA
ATCTCGTGCTAATAACACGGCAGAGTCCTGGTGGTGGCCCTGGAAGAATG
TTATTCTAGCCCTTGGTCTTGCCTTGATTCTGACTTTCACTGTTAAGGGC
TACGATGCATTTAATGACATGGAAGACAATGGCTTCGCTCTAGTGGCCGC
AACGGCGCCGGGTTCCCATTGGGGCAATTGGCGCAGCCTGACCCGATGTG
ATTGCAAGGCCTTTCAACAGTGCACCGATGCCTTGTCCAAGGCCAAGACC
CTGAAGGATACTCGCCTGGGTCGTTTTTTCCAGCTTGCCACCTGTAAGCT
GGCCACGGGACAGGACGAGGACTGTCAATTGAGGGACAAGGAGCTCAAGA
GTGGCTTAACCCGCTTTCGGTTCTTCGGGCCCGAGCTCGTGCTTCGTTTG
CGGCTGGCGGCGGATTTTAAGTGGTGGGTCCGGCTGGGTTGTTATTTCCT
CATGTGTTGCGCATTGCTTGAGATCCTCTTCTATTTGATTGAAACGACGC
AGTTGCGGTGGCAACGGAAGGGGGCCATGAAGCAAGAGGGCTCAAGGGAG
TGGTGGGAGAAGGAGGTATTGGTATGGTTGTTCCTGATAGGGTGGCACGA
GGTCTTGAGCTACGCAGTTCATTACGTGTATAATGACCAGCATACCATGT
GTGATGGGATCGGGTTGTTCTTTCGGGATGCCATGGCTCTGTACACTCTA
ATTCAAGTGGGCATGCGCGCTGTTGTCAAGCGCGGTCCGAATGCGCATCG
AGTGTGGCTCGTCCAAGCGGAGCAGAAGTACGCGGCTTTGCAGGGGAAGC
CACTATGGGTGCAGGTTGTGCGAGATCCCAGGATTGGGGCGTTTCATTTG
TTTAGCGGCCTGGAGCTGAAGGTGACTGAGGACCCGGTAGGGGTGATATC
CGGGCTCGTAAATACATTGTTGAGCGTGGCCGAGAGGGTGTTGAGGTATG
CGCCGCACGAGGTGCAGAAGCTTGTGGCGATGGTGCCATATTTGGGGGGG
AGGCTAGTGGTGCTGGGAGTCTCGGGGACTGTGCCGGGGCAAGTGGAAGG
GAGTAGTAGTAGAAGGAAGGATGAGTAAAAGAGGTGGGGGAGGGGTTGAC
GAGAGACCTCAACGAAAGAAGTGAAGTAAACAAAAAAATATACACGT
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Coding sequence (CDS) from alignment at scaffold_1:1377944..1379390-

>mRNA_1743 ID=mRNA_1743|Name=jgi.p|Nanoce1779_2|573285|organism=Nannochloropsis oceanica|type=CDS|length=1322bp|location=Sequence derived from alignment at scaffold_1:1377944..1379390- (Nannochloropsis oceanica)
ATGATGAGGCGGTTGCGCCGCAAGACCTCCGACATGGAAGCGGCGCGCAC
TGCATCCTCGTCTTCACCCACCACCTCCGCCTCTACCTCGCCCGTGAAGC
GCCGTGGCAATGAGATGAAAAAATCTTCCGCCGGGCAAGACTTGGATGCC
CCCTCGTCCTCCGCTGCCCCCTCATTGTCTGCCTCGACCGGAAGTAGCAG
TACAACCAAGGCGGAGAAGCGTTCCATCAACTCTCCCCCTCATCACAAAT
CTCGTGCTAATAACACGGCAGAGTCCTGGTGGTGGCCCTGGAAGAATGTT
ATTCTAGCCCTTGGTCTTGCCTTGATTCTGACTTTCACTGTTAAGGGCTA
CGATGCATTTAATGACATGGAAGACAATGGCTTCGCTCTAGTGGCCGCAA
CGGCGCCGGGTTCCCATTGGGGCAATTGGCGCAGCCTGACCCGATGTGAT
TGCAAGGCCTTTCAACAGTGCACCGATGCCTTGTCCAAGGCCAAGACCCT
GAAGGATACTCGCCTGGGTCGTTTTTTCCAGCTTGCCACCTGTAAGCTGG
CCACGGGACAGGACGAGGACTGTCAATTGAGGGACAAGGAGCTCAAGAGT
GGCTTAACCCGCTTTCGGTTCTTCGGGCCCGAGCTCGTGCTTCGTTTGCG
GCTGGCGGCGGATTTTAAGTGGTGGGTCCGGCTGGGTTGTTATTTCCTCA
TGTGTTGCGCATTGCTTGAGATCCTCTTCTATTTGATTGAAACGACGCAG
TTGCGGTGGCAACGGAAGGGGGCCATGAAGCAAGAGGGCTCAAGGGAGTG
GTGGGAGAAGGAGGTATTGGTATGGTTGTTCCTGATAGGGTGGCACGAGG
TCTTGAGCTACGCAGTTCATTACGTGTATAATGACCAGCATACCATGTGT
GATGGGATCGGGTTGTTCTTTCGGGATGCCATGGCTCTGTACACTCTAAT
TCAAGTGGGCATGCGCGCTGTTGTCAAGCGCGGTCCGAATGCGCATCGAG
TGTGGCTCGTCCAAGCGGAGCAGAAGTACGCGGCTTTGCAGGGGAAGCCA
CTATGGGTGCAGGTTGTGCGAGATCCCAGGATTGGGGCGTTTCATTTGTT
TAGCGGCCTGGAGCTGAAGGTGACTGAGGACCCGGTAGGGGTGATATCCG
GGCTCGTAAATACATTGTTGAGCGTGGCCGAGAGGGTGTTGAGGTATGCG
CCGCACGAGGTGCAGAAGCTTGTGGCGATGGTGCCATATTTGGGGGGGAG
GCTAGTGGTGCTGGGAGTCTCGGGGACTGTGCCGGGGCAAGTGGAAGGGA
GTAGTAGTAGAAGGAAGGATGA
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Synonyms
Publications