jgi.p|Nanoce1779_2|521593, mRNA_1742 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|521593
Unique NamemRNA_1742
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1362
Alignment locationscaffold_1:1376471..1377832 +

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Properties
Property NameValue
TranscriptId521679
TrackFilteredModels2
ProteinId521593
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:1376471..1377832 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|521593gene_1742Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|521593mRNA_1742-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1742CDS_1742Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1742 ID=mRNA_1742|Name=jgi.p|Nanoce1779_2|521593|organism=Nannochloropsis oceanica|type=mRNA|length=1362bp
ATGGTGCCTTTCTACCCTACGACGACTGCCATCACTACCCTTGTCCTCCG
TCGTCGAGCGGCGCCCTTCCCCTCTATTGCCACGACCAACACCGTCGCAA
CCCGCCTAGCAGTAGCCACGGGTACGAATGGTGCTATTCCATTCGCCGCG
ACCTTGACGACGGGCCTGCATGCCTCGCCGTGGTGGGTTTGGTCGATGCT
TCTCCTCGCGTCAACCGCCGGTGTGGCCGCCGAACGCTCTAAGGTTGGAG
CCGCCCTTTCATCCCCTCTTATTACCATGGCCGTAGCCCTCGTTGTGTGC
AACCTCGGCCTTCTCCCCGCCGTTGCACCCGCCTACGCTACTGTCAATAA
GTTTCTAGTTCCTTTAGCCATTCCTCTCCTCCTTCTCGACGCCAACCTCT
TTAAAGTCCTCACCCAAACCGGTCGCTTGCTCCGTTCCTTCGCCCTCGGC
AGCATTGGCACGGTCCTTGGGACGCTTGTGGCTGCGTGGCTTGTGCCGTT
GAGGAATTTAGGGGTGGATGGAAAGGAGGGATGGACGATTGCGGCAGCCT
TGGCCTCAAGGCATATTGGAGGAGCTGTTAATTTTGTGGCGGTTAGCGAG
ACGTTGGCGACCTCTGCTGAGCTCACCGCAGCAGGCATCGCCGCGGATAA
TCTGGTGGTGTCGTTCTATTTTGGTTTGCTTTTCTGGCTGGCCCGGCGTA
TTTTGCCGGAGGAGGAGGAGGAAGAGGGGCAGGGCGGAGGGGTGGCAGGG
GAAGGAGAGAAAGAGGAATGGGTTGGGCGAGCCAGGGTAATAGAAGCAGC
CGACGCTCCTGCCCTTGGGTATTTGAAGGCCCTCAGCCTGTCGTGCGTCC
TTTGTATGGTTGGCACGTGGGTTGGCGAAGGGCTGCTGAGTGGAGCTATC
TCGAGTTTGCCCATCATCTCCCTCCTGTCTGTCACCATTGCCACTCTATT
CCCTCGAGCCTGCGCGAGCATCACGGAACCCGCAGGCCATCTCGCTGTCA
TCCTCATGAATCTTTTCTTCTCCGTCACTGGTGCCCAAGGAAAATTGGGC
AAGGTCTTGGCGACGGCTCCCCGTCTTTTCCTCTTCTCCGCTGTCCAACT
TTTCGTTCACCTCGCTTTCCTCCTAGGGGCGGGCAGAGGCCTCTTTCGCC
TCCCTTTCAAGGAGCTGTTGATCGCATCGAACGCCAACGTCGGGGGCCCA
ACAACAGCAGCAGCCATGGCGGGGAGTAAGAAGTGGAAGAGTCTCGTGCT
GCCAGGCATACTTACGGGTATCCTAGGGTACGCCTCAGCGACGTTCATTG
GCTTGGTCCTTGGGAGGAGGGTGCTAGCGAAGATGATGATGAGTAGCGTG
GGAGGAAGTTGA
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protein sequence of jgi.p|Nanoce1779_2|521593

>mRNA_1742-protein ID=mRNA_1742-protein|Name=jgi.p|Nanoce1779_2|521593|organism=Nannochloropsis oceanica|type=polypeptide|length=454bp
MVPFYPTTTAITTLVLRRRAAPFPSIATTNTVATRLAVATGTNGAIPFAA
TLTTGLHASPWWVWSMLLLASTAGVAAERSKVGAALSSPLITMAVALVVC
NLGLLPAVAPAYATVNKFLVPLAIPLLLLDANLFKVLTQTGRLLRSFALG
SIGTVLGTLVAAWLVPLRNLGVDGKEGWTIAAALASRHIGGAVNFVAVSE
TLATSAELTAAGIAADNLVVSFYFGLLFWLARRILPEEEEEEGQGGGVAG
EGEKEEWVGRARVIEAADAPALGYLKALSLSCVLCMVGTWVGEGLLSGAI
SSLPIISLLSVTIATLFPRACASITEPAGHLAVILMNLFFSVTGAQGKLG
KVLATAPRLFLFSAVQLFVHLAFLLGAGRGLFRLPFKELLIASNANVGGP
TTAAAMAGSKKWKSLVLPGILTGILGYASATFIGLVLGRRVLAKMMMSSV
GGS*
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mRNA from alignment at scaffold_1:1376471..1377832+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1742 ID=mRNA_1742|Name=jgi.p|Nanoce1779_2|521593|organism=Nannochloropsis oceanica|type=mRNA|length=1362bp|location=Sequence derived from alignment at scaffold_1:1376471..1377832+ (Nannochloropsis oceanica)
ATGGTGCCTTTCTACCCTACGACGACTGCCATCACTACCCTTGTCCTCCG
TCGTCGAGCGGCGCCCTTCCCCTCTATTGCCACGACCAACACCGTCGCAA
CCCGCCTAGCAGTAGCCACGGGTACGAATGGTGCTATTCCATTCGCCGCG
ACCTTGACGACGGGCCTGCATGCCTCGCCGTGGTGGGTTTGGTCGATGCT
TCTCCTCGCGTCAACCGCCGGTGTGGCCGCCGAACGCTCTAAGGTTGGAG
CCGCCCTTTCATCCCCTCTTATTACCATGGCCGTAGCCCTCGTTGTGTGC
AACCTCGGCCTTCTCCCCGCCGTTGCACCCGCCTACGCTACTGTCAATAA
GTTTCTAGTTCCTTTAGCCATTCCTCTCCTCCTTCTCGACGCCAACCTCT
TTAAAGTCCTCACCCAAACCGGTCGCTTGCTCCGTTCCTTCGCCCTCGGC
AGCATTGGCACGGTCCTTGGGACGCTTGTGGCTGCGTGGCTTGTGCCGTT
GAGGAATTTAGGGGTGGATGGAAAGGAGGGATGGACGATTGCGGCAGCCT
TGGCCTCAAGGCATATTGGAGGAGCTGTTAATTTTGTGGCGGTTAGCGAG
ACGTTGGCGACCTCTGCTGAGCTCACCGCAGCAGGCATCGCCGCGGATAA
TCTGGTGGTGTCGTTCTATTTTGGTTTGCTTTTCTGGCTGGCCCGGCGTA
TTTTGCCGGAGGAGGAGGAGGAAGAGGGGCAGGGCGGAGGGGTGGCAGGG
GAAGGAGAGAAAGAGGAATGGGTTGGGCGAGCCAGGGTAATAGAAGCAGC
CGACGCTCCTGCCCTTGGGTATTTGAAGGCCCTCAGCCTGTCGTGCGTCC
TTTGTATGGTTGGCACGTGGGTTGGCGAAGGGCTGCTGAGTGGAGCTATC
TCGAGTTTGCCCATCATCTCCCTCCTGTCTGTCACCATTGCCACTCTATT
CCCTCGAGCCTGCGCGAGCATCACGGAACCCGCAGGCCATCTCGCTGTCA
TCCTCATGAATCTTTTCTTCTCCGTCACTGGTGCCCAAGGAAAATTGGGC
AAGGTCTTGGCGACGGCTCCCCGTCTTTTCCTCTTCTCCGCTGTCCAACT
TTTCGTTCACCTCGCTTTCCTCCTAGGGGCGGGCAGAGGCCTCTTTCGCC
TCCCTTTCAAGGAGCTGTTGATCGCATCGAACGCCAACGTCGGGGGCCCA
ACAACAGCAGCAGCCATGGCGGGGAGTAAGAAGTGGAAGAGTCTCGTGCT
GCCAGGCATACTTACGGGTATCCTAGGGTACGCCTCAGCGACGTTCATTG
GCTTGGTCCTTGGGAGGAGGGTGCTAGCGAAGATGATGATGAGTAGCGTG
GGAGGAAGTTGA
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Coding sequence (CDS) from alignment at scaffold_1:1376471..1377832+

>mRNA_1742 ID=mRNA_1742|Name=jgi.p|Nanoce1779_2|521593|organism=Nannochloropsis oceanica|type=CDS|length=1362bp|location=Sequence derived from alignment at scaffold_1:1376471..1377832+ (Nannochloropsis oceanica)
ATGGTGCCTTTCTACCCTACGACGACTGCCATCACTACCCTTGTCCTCCG
TCGTCGAGCGGCGCCCTTCCCCTCTATTGCCACGACCAACACCGTCGCAA
CCCGCCTAGCAGTAGCCACGGGTACGAATGGTGCTATTCCATTCGCCGCG
ACCTTGACGACGGGCCTGCATGCCTCGCCGTGGTGGGTTTGGTCGATGCT
TCTCCTCGCGTCAACCGCCGGTGTGGCCGCCGAACGCTCTAAGGTTGGAG
CCGCCCTTTCATCCCCTCTTATTACCATGGCCGTAGCCCTCGTTGTGTGC
AACCTCGGCCTTCTCCCCGCCGTTGCACCCGCCTACGCTACTGTCAATAA
GTTTCTAGTTCCTTTAGCCATTCCTCTCCTCCTTCTCGACGCCAACCTCT
TTAAAGTCCTCACCCAAACCGGTCGCTTGCTCCGTTCCTTCGCCCTCGGC
AGCATTGGCACGGTCCTTGGGACGCTTGTGGCTGCGTGGCTTGTGCCGTT
GAGGAATTTAGGGGTGGATGGAAAGGAGGGATGGACGATTGCGGCAGCCT
TGGCCTCAAGGCATATTGGAGGAGCTGTTAATTTTGTGGCGGTTAGCGAG
ACGTTGGCGACCTCTGCTGAGCTCACCGCAGCAGGCATCGCCGCGGATAA
TCTGGTGGTGTCGTTCTATTTTGGTTTGCTTTTCTGGCTGGCCCGGCGTA
TTTTGCCGGAGGAGGAGGAGGAAGAGGGGCAGGGCGGAGGGGTGGCAGGG
GAAGGAGAGAAAGAGGAATGGGTTGGGCGAGCCAGGGTAATAGAAGCAGC
CGACGCTCCTGCCCTTGGGTATTTGAAGGCCCTCAGCCTGTCGTGCGTCC
TTTGTATGGTTGGCACGTGGGTTGGCGAAGGGCTGCTGAGTGGAGCTATC
TCGAGTTTGCCCATCATCTCCCTCCTGTCTGTCACCATTGCCACTCTATT
CCCTCGAGCCTGCGCGAGCATCACGGAACCCGCAGGCCATCTCGCTGTCA
TCCTCATGAATCTTTTCTTCTCCGTCACTGGTGCCCAAGGAAAATTGGGC
AAGGTCTTGGCGACGGCTCCCCGTCTTTTCCTCTTCTCCGCTGTCCAACT
TTTCGTTCACCTCGCTTTCCTCCTAGGGGCGGGCAGAGGCCTCTTTCGCC
TCCCTTTCAAGGAGCTGTTGATCGCATCGAACGCCAACGTCGGGGGCCCA
ACAACAGCAGCAGCCATGGCGGGGAGTAAGAAGTGGAAGAGTCTCGTGCT
GCCAGGCATACTTACGGGTATCCTAGGGTACGCCTCAGCGACGTTCATTG
GCTTGGTCCTTGGGAGGAGGGTGCTAGCGAAGATGATGATGAGTAGCGTG
GGAGGAAGTTGA
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Synonyms
Publications