jgi.p|Nanoce1779_2|521951, mRNA_1741 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|521951
Unique NamemRNA_1741
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1404
Alignment locationscaffold_1:1374516..1375919 -

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Properties
Property NameValue
TranscriptId522037
TrackFilteredModels2
ProteinId521951
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:1374516..1375919 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|521951gene_1741Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1741CDS_1741Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|521951mRNA_1741-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1741 ID=mRNA_1741|Name=jgi.p|Nanoce1779_2|521951|organism=Nannochloropsis oceanica|type=mRNA|length=1404bp
ATGGCGCGTGGGTCAAGTGCCCCTGATTTGGAAAATGTAGATGGGCGGCA
TTTCGACGTGCAGCGAACCTTAGGGGAAGGGGGCTTCGGCAAGGTCAATG
CGGTGGTCAAAAAGACGGAACCAGATGTGGGCAAGTGGTACGCCATGAAA
GCGTTGGTCAAGGAGGTGATTGTCCACAAACAAATGCAAGAGGAAGTCCT
GCGCGAATTGGCCCTGCTCCGCGAGGTTGGAAGCAGTCACTTTGTTGCCT
CAGCCTACTACGCTTTTCAAGACTTTTCCCATCTTTATCTAGTCCTTGAC
TTATATTTGGGCGGCGATTTGCGTTTTCATTTGTCCAAGGCCCCCGAGCG
CCATTTGTCAGCGGCCCAAGTCACGTTTTACGGAGCCTCCCTCGTACTAG
CCCTGGACTTTTTGCATACCCGAGGCGTCTTGCATCGTGACATCAAGCCC
GAGAATGTTCTTATGGACGACAAGGGCCAGATTGCACTGACTGACTTAGG
CATCTCAGCCAAAATTGACGATACCTCGACACGGACAGCCCTGATCTGCA
CACACACCAGCGGCACGCCGGGGTACATGGGACCCGAGCTCTTTTGGGCA
ACCCATCGGCATGGTATCCCTTCCGAAGGATTTTCTTTGGGTGTGTTGCT
ATATGAACTCAGTACGGGGGCTCGGCCATACGCACATGATATGTTTAACA
AGCTGGACCACCACGGCGAGGAGGCCGCGTACTATAAGGACGCCGCCGCT
GCGACTGAGAAGATGCCCCTTTTCAAAAGCGTTCCGGCGATCAGCGCGCC
ACCAGAAATGCAGGCCCTTATCCGCCAGTTGCTTCGAGTTCATCCAGAGC
AGCGTGGTGTGAACGAAACCCAAGGCCTGACTTCGCTCAAAACCAGTCCG
GCCTTCGCGGGTCTGGACTGGGAGGCCCTCAGCGCCAAGACGCTTGCTCC
TCCCTTTGTGCCCAAGAAGGAGGCCAATGTTCAGGCAAACATGAATGATC
TCTTTGATGAAGAGGATGATGGAGCCGTGACAGTAGTCAAAAAGAAAAAG
AAGAATGATAAAGTCGTCGCGGGCCTCCTGACCCCCGAGCAGCAGGCAGC
CTTCGCGTCATATAGCTACAATCACCGCAAGATCACAGGCAATACCGGAA
TCGAGAACAATGAAAAGAGGTCAAATATCCGCAACTCCATTGTCAACATA
ATTTCCTTCCCAAAGAGCTTGCACCAGAGTTTCGAAAGCCTAGCGGGCAG
AAGATCTTCGTCGTCCAACATGTCCATCGGAGGAAAGGCTAATGACCCCG
TAGGTATTTTCCTGCCTTCTTCACCCTCTACTAAGTTCCTCTCTGTACTG
CCTGACGTGCCTGAAGCCGCGGGGAACGGAAATCTTGCTGCTTTGACTGA
TTAG
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protein sequence of jgi.p|Nanoce1779_2|521951

>mRNA_1741-protein ID=mRNA_1741-protein|Name=jgi.p|Nanoce1779_2|521951|organism=Nannochloropsis oceanica|type=polypeptide|length=468bp
MARGSSAPDLENVDGRHFDVQRTLGEGGFGKVNAVVKKTEPDVGKWYAMK
ALVKEVIVHKQMQEEVLRELALLREVGSSHFVASAYYAFQDFSHLYLVLD
LYLGGDLRFHLSKAPERHLSAAQVTFYGASLVLALDFLHTRGVLHRDIKP
ENVLMDDKGQIALTDLGISAKIDDTSTRTALICTHTSGTPGYMGPELFWA
THRHGIPSEGFSLGVLLYELSTGARPYAHDMFNKLDHHGEEAAYYKDAAA
ATEKMPLFKSVPAISAPPEMQALIRQLLRVHPEQRGVNETQGLTSLKTSP
AFAGLDWEALSAKTLAPPFVPKKEANVQANMNDLFDEEDDGAVTVVKKKK
KNDKVVAGLLTPEQQAAFASYSYNHRKITGNTGIENNEKRSNIRNSIVNI
ISFPKSLHQSFESLAGRRSSSSNMSIGGKANDPVGIFLPSSPSTKFLSVL
PDVPEAAGNGNLAALTD*
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mRNA from alignment at scaffold_1:1374516..1375919-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1741 ID=mRNA_1741|Name=jgi.p|Nanoce1779_2|521951|organism=Nannochloropsis oceanica|type=mRNA|length=1404bp|location=Sequence derived from alignment at scaffold_1:1374516..1375919- (Nannochloropsis oceanica)
ATGGCGCGTGGGTCAAGTGCCCCTGATTTGGAAAATGTAGATGGGCGGCA
TTTCGACGTGCAGCGAACCTTAGGGGAAGGGGGCTTCGGCAAGGTCAATG
CGGTGGTCAAAAAGACGGAACCAGATGTGGGCAAGTGGTACGCCATGAAA
GCGTTGGTCAAGGAGGTGATTGTCCACAAACAAATGCAAGAGGAAGTCCT
GCGCGAATTGGCCCTGCTCCGCGAGGTTGGAAGCAGTCACTTTGTTGCCT
CAGCCTACTACGCTTTTCAAGACTTTTCCCATCTTTATCTAGTCCTTGAC
TTATATTTGGGCGGCGATTTGCGTTTTCATTTGTCCAAGGCCCCCGAGCG
CCATTTGTCAGCGGCCCAAGTCACGTTTTACGGAGCCTCCCTCGTACTAG
CCCTGGACTTTTTGCATACCCGAGGCGTCTTGCATCGTGACATCAAGCCC
GAGAATGTTCTTATGGACGACAAGGGCCAGATTGCACTGACTGACTTAGG
CATCTCAGCCAAAATTGACGATACCTCGACACGGACAGCCCTGATCTGCA
CACACACCAGCGGCACGCCGGGGTACATGGGACCCGAGCTCTTTTGGGCA
ACCCATCGGCATGGTATCCCTTCCGAAGGATTTTCTTTGGGTGTGTTGCT
ATATGAACTCAGTACGGGGGCTCGGCCATACGCACATGATATGTTTAACA
AGCTGGACCACCACGGCGAGGAGGCCGCGTACTATAAGGACGCCGCCGCT
GCGACTGAGAAGATGCCCCTTTTCAAAAGCGTTCCGGCGATCAGCGCGCC
ACCAGAAATGCAGGCCCTTATCCGCCAGTTGCTTCGAGTTCATCCAGAGC
AGCGTGGTGTGAACGAAACCCAAGGCCTGACTTCGCTCAAAACCAGTCCG
GCCTTCGCGGGTCTGGACTGGGAGGCCCTCAGCGCCAAGACGCTTGCTCC
TCCCTTTGTGCCCAAGAAGGAGGCCAATGTTCAGGCAAACATGAATGATC
TCTTTGATGAAGAGGATGATGGAGCCGTGACAGTAGTCAAAAAGAAAAAG
AAGAATGATAAAGTCGTCGCGGGCCTCCTGACCCCCGAGCAGCAGGCAGC
CTTCGCGTCATATAGCTACAATCACCGCAAGATCACAGGCAATACCGGAA
TCGAGAACAATGAAAAGAGGTCAAATATCCGCAACTCCATTGTCAACATA
ATTTCCTTCCCAAAGAGCTTGCACCAGAGTTTCGAAAGCCTAGCGGGCAG
AAGATCTTCGTCGTCCAACATGTCCATCGGAGGAAAGGCTAATGACCCCG
TAGGTATTTTCCTGCCTTCTTCACCCTCTACTAAGTTCCTCTCTGTACTG
CCTGACGTGCCTGAAGCCGCGGGGAACGGAAATCTTGCTGCTTTGACTGA
TTAG
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Coding sequence (CDS) from alignment at scaffold_1:1374516..1375919-

>mRNA_1741 ID=mRNA_1741|Name=jgi.p|Nanoce1779_2|521951|organism=Nannochloropsis oceanica|type=CDS|length=1404bp|location=Sequence derived from alignment at scaffold_1:1374516..1375919- (Nannochloropsis oceanica)
ATGGCGCGTGGGTCAAGTGCCCCTGATTTGGAAAATGTAGATGGGCGGCA
TTTCGACGTGCAGCGAACCTTAGGGGAAGGGGGCTTCGGCAAGGTCAATG
CGGTGGTCAAAAAGACGGAACCAGATGTGGGCAAGTGGTACGCCATGAAA
GCGTTGGTCAAGGAGGTGATTGTCCACAAACAAATGCAAGAGGAAGTCCT
GCGCGAATTGGCCCTGCTCCGCGAGGTTGGAAGCAGTCACTTTGTTGCCT
CAGCCTACTACGCTTTTCAAGACTTTTCCCATCTTTATCTAGTCCTTGAC
TTATATTTGGGCGGCGATTTGCGTTTTCATTTGTCCAAGGCCCCCGAGCG
CCATTTGTCAGCGGCCCAAGTCACGTTTTACGGAGCCTCCCTCGTACTAG
CCCTGGACTTTTTGCATACCCGAGGCGTCTTGCATCGTGACATCAAGCCC
GAGAATGTTCTTATGGACGACAAGGGCCAGATTGCACTGACTGACTTAGG
CATCTCAGCCAAAATTGACGATACCTCGACACGGACAGCCCTGATCTGCA
CACACACCAGCGGCACGCCGGGGTACATGGGACCCGAGCTCTTTTGGGCA
ACCCATCGGCATGGTATCCCTTCCGAAGGATTTTCTTTGGGTGTGTTGCT
ATATGAACTCAGTACGGGGGCTCGGCCATACGCACATGATATGTTTAACA
AGCTGGACCACCACGGCGAGGAGGCCGCGTACTATAAGGACGCCGCCGCT
GCGACTGAGAAGATGCCCCTTTTCAAAAGCGTTCCGGCGATCAGCGCGCC
ACCAGAAATGCAGGCCCTTATCCGCCAGTTGCTTCGAGTTCATCCAGAGC
AGCGTGGTGTGAACGAAACCCAAGGCCTGACTTCGCTCAAAACCAGTCCG
GCCTTCGCGGGTCTGGACTGGGAGGCCCTCAGCGCCAAGACGCTTGCTCC
TCCCTTTGTGCCCAAGAAGGAGGCCAATGTTCAGGCAAACATGAATGATC
TCTTTGATGAAGAGGATGATGGAGCCGTGACAGTAGTCAAAAAGAAAAAG
AAGAATGATAAAGTCGTCGCGGGCCTCCTGACCCCCGAGCAGCAGGCAGC
CTTCGCGTCATATAGCTACAATCACCGCAAGATCACAGGCAATACCGGAA
TCGAGAACAATGAAAAGAGGTCAAATATCCGCAACTCCATTGTCAACATA
ATTTCCTTCCCAAAGAGCTTGCACCAGAGTTTCGAAAGCCTAGCGGGCAG
AAGATCTTCGTCGTCCAACATGTCCATCGGAGGAAAGGCTAATGACCCCG
TAGGTATTTTCCTGCCTTCTTCACCCTCTACTAAGTTCCTCTCTGTACTG
CCTGACGTGCCTGAAGCCGCGGGGAACGGAAATCTTGCTGCTTTGACTGA
TTAG
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Synonyms
Publications