jgi.p|Nanoce1779_2|576442, mRNA_174 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|576442
Unique NamemRNA_174
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length927
Alignment locationscaffold_3:439956..440882 -

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Properties
Property NameValue
TranscriptId576528
TrackFilteredModels2
ProteinId576442
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:439956..440882 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576442gene_174Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576442mRNA_174-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_174CDS_174Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_174 ID=mRNA_174|Name=jgi.p|Nanoce1779_2|576442|organism=Nannochloropsis oceanica|type=mRNA|length=927bp
TTTTCGCGACGGGTTGTGATTTGCCCAACGTACGTGAGCCATGCAGACAT
TTCAAGTCACTTCACGCAACTGTTACAGTCCAACGATACCCATTTGGCAC
TGTTGTTTGTTTGTCATGCCGCATATAGCCTTGGAATCCTTGACGGACAG
TGACAATGTGCCTGGGTCGCTCCTTCCCGATCCATCTCCTCTCCAGCGGG
CTATCGCCTATCGGCGTACCCTCCCTCCTCATCCACTTTCCCTACGCATA
CACCAACACAAAATGTACGTCCAAAGTACGAGGGCGAATACGCGGTTTCT
ATCTCCAGGGGGCTGGACAAGGGGGTACCGTGGCAAGGAGGTGTTGTCTT
GGATACTTCCTTGTCTGGAGCAAGCACGACCACGGGAATTCCTCCTCCTC
CTCCTCCTCCTCATCATCATCATCATCATCATCATCATCATTATCATCAT
CATTATCATCAGCATCGTCATTCTCCTCTCCTCCTCAACATAGACTCATT
CAAAACACGCTTCAGGCCCTTTAGTCCTGGCACCTTCTTCACGAGATCAA
AGTAAAAGACGCGCTTTGCCCGGAGAAACAGGGACTGTTTAAATTTGAAG
TATTTCTCGAGCTCAACAGTCTTGCTGTTGTCGCTCTGGAAATGTGCATT
TACGACCATTTGACGCGACGCATATATGCACAACCCAATGCGGCTGTCCG
GGTGGTAATTAGTGGCCAGGCACCGATCTGGAAACAGAGTGCAACACAGC
CCCTCGCGACGATTCCCACCACCGTGGGCGACGCACATTCTTGGCTAGCC
TGTATTCTGGCTGTTGTGTTGAGCAGACTGCCCACACTCTGCTGTCTTGG
ACGGAGGCGCGGCGAAGAAAACAAAGATATGACGTGCTCACGAGAGTGGG
GGTGGGGATCGAATATGGAGGGAGGGA
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protein sequence of jgi.p|Nanoce1779_2|576442

>mRNA_174-protein ID=mRNA_174-protein|Name=jgi.p|Nanoce1779_2|576442|organism=Nannochloropsis oceanica|type=polypeptide|length=151bp
MQTFQVTSRNCYSPTIPIWHCCLFVMPHIALESLTDSDNVPGSLLPDPSP
LQRAIAYRRTLPPHPLSLRIHQHKMYVQSTRANTRFLSPGGWTRGYRGKE
VLSWILPCLEQARPREFLLLLLLLIIIIIIIIIIIIIIIISIVILLSSST
*
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mRNA from alignment at scaffold_3:439956..440882-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_174 ID=mRNA_174|Name=jgi.p|Nanoce1779_2|576442|organism=Nannochloropsis oceanica|type=mRNA|length=927bp|location=Sequence derived from alignment at scaffold_3:439956..440882- (Nannochloropsis oceanica)
TTTTCGCGACGGGTTGTGATTTGCCCAACGTACGTGAGCCATGCAGACAT
TTCAAGTCACTTCACGCAACTGTTACAGTCCAACGATACCCATTTGGCAC
TGTTGTTTGTTTGTCATGCCGCATATAGCCTTGGAATCCTTGACGGACAG
TGACAATGTGCCTGGGTCGCTCCTTCCCGATCCATCTCCTCTCCAGCGGG
CTATCGCCTATCGGCGTACCCTCCCTCCTCATCCACTTTCCCTACGCATA
CACCAACACAAAATGTACGTCCAAAGTACGAGGGCGAATACGCGGTTTCT
ATCTCCAGGGGGCTGGACAAGGGGGTACCGTGGCAAGGAGGTGTTGTCTT
GGATACTTCCTTGTCTGGAGCAAGCACGACCACGGGAATTCCTCCTCCTC
CTCCTCCTCCTCATCATCATCATCATCATCATCATCATCATTATCATCAT
CATTATCATCAGCATCGTCATTCTCCTCTCCTCCTCAACATAGACTCATT
CAAAACACGCTTCAGGCCCTTTAGTCCTGGCACCTTCTTCACGAGATCAA
AGTAAAAGACGCGCTTTGCCCGGAGAAACAGGGACTGTTTAAATTTGAAG
TATTTCTCGAGCTCAACAGTCTTGCTGTTGTCGCTCTGGAAATGTGCATT
TACGACCATTTGACGCGACGCATATATGCACAACCCAATGCGGCTGTCCG
GGTGGTAATTAGTGGCCAGGCACCGATCTGGAAACAGAGTGCAACACAGC
CCCTCGCGACGATTCCCACCACCGTGGGCGACGCACATTCTTGGCTAGCC
TGTATTCTGGCTGTTGTGTTGAGCAGACTGCCCACACTCTGCTGTCTTGG
ACGGAGGCGCGGCGAAGAAAACAAAGATATGACGTGCTCACGAGAGTGGG
GGTGGGGATCGAATATGGAGGGAGGGA
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Coding sequence (CDS) from alignment at scaffold_3:439956..440882-

>mRNA_174 ID=mRNA_174|Name=jgi.p|Nanoce1779_2|576442|organism=Nannochloropsis oceanica|type=CDS|length=453bp|location=Sequence derived from alignment at scaffold_3:439956..440882- (Nannochloropsis oceanica)
ATGCAGACATTTCAAGTCACTTCACGCAACTGTTACAGTCCAACGATACC
CATTTGGCACTGTTGTTTGTTTGTCATGCCGCATATAGCCTTGGAATCCT
TGACGGACAGTGACAATGTGCCTGGGTCGCTCCTTCCCGATCCATCTCCT
CTCCAGCGGGCTATCGCCTATCGGCGTACCCTCCCTCCTCATCCACTTTC
CCTACGCATACACCAACACAAAATGTACGTCCAAAGTACGAGGGCGAATA
CGCGGTTTCTATCTCCAGGGGGCTGGACAAGGGGGTACCGTGGCAAGGAG
GTGTTGTCTTGGATACTTCCTTGTCTGGAGCAAGCACGACCACGGGAATT
CCTCCTCCTCCTCCTCCTCCTCATCATCATCATCATCATCATCATCATCA
TTATCATCATCATTATCATCAGCATCGTCATTCTCCTCTCCTCCTCAACA
TAG
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Synonyms
Publications