jgi.p|Nanoce1779_2|573276, mRNA_1738 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|573276
Unique NamemRNA_1738
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1222
Alignment locationscaffold_1:1366363..1367584 +

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Properties
Property NameValue
TranscriptId573362
TrackFilteredModels2
ProteinId573276
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:1366363..1367584 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573276gene_1738Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573276mRNA_1738-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1738CDS_1738Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1738 ID=mRNA_1738|Name=jgi.p|Nanoce1779_2|573276|organism=Nannochloropsis oceanica|type=mRNA|length=1222bp
ACAGCAATATTCAGCTTTCTTCCGACTATCGACGCCACCGCCCTCACCGT
ATCAACACTGGCAGTAACGACGAAACAACAGCCAGCGAAATGACCACCAA
CATTCAGCAGACAATGGGGCAGATGGGGCAGTTCGTGGAACGTGGTGTGA
AGCAACTGGTACCCTCAGAAATGGAGCACACAGTGGACGAGGGCCAGGCC
ATTTTGGGGCGCTACCTGAACATGCCCTTCGCATTTAGCATGGAACAAGA
GATCCGTAAGGCTCGCAACATTTGCAAGAACCTCAAGGACTTCCCTGCCT
ACCTCGACGGCAAGCTGGTATCCTCTCAAATCAAGCAGGCCGACGCGGTG
GTATTCTTAACGAATGCCCGTGCGGGCATCTTTATGACGGGCCACGTCGG
GTCTGGCTTGGTAGTGGCACGCAACTCGGACGGGTCCTGGTCGGCGCCCT
CAGCCGTCTTCTACCTTGGCTCGGGTATGGGCCTGCAAGGCGGCGCAGAT
GTGACGGACTACGTGGTCATTCTGAAGCGCCAAGCTGTGGACTCCTTCGC
GGGTAACAACCAGCTGGTCTTGGGCGGCGACGTCGGCGCGACATTTTGGA
TGGGGCGTCACGGCACGGCTGAGCTCCATATTGGAAAGCGGACCGGTATG
GCATTGGGCTGGGCGGCGAGCAAAGGGTTTTTTGCAGGCGCAGCGGCCAC
AGCTGGCTATCTTTGCACTCGTGGTGGCATCAACAAGAAATTTTACGGCC
GTGAAGTGGACCCCTGTGACCTGCTCCACGGGAAGATCAGCAAGCCTCGA
GCCGCCAAGCCCCTGTACGAGGCCCTCAACGACTTGCCGTAATGTGCTGG
GCAGGAGAAGGAAGAAGGTAGAACAATTTTGGTGTTTGAGAAAGAAGGGC
AGTGGTCCTTAAACAGAAAGGAATGGAAGGTAAGGTTAGTGCGGTGCTTG
ACTTGTGTGGTACATGAAAGACGATATTGGCAGAAGCAGCAGTGGTCATT
TTAATAAGAACAACAACAATTCCAGCAACACGTATGAAGAAAGCCACGAA
GAGAGACAAGCAAGTGTCTGCATTGTTCATTATGTGTGTGTGCATGCGAG
GGTTCCGTATGTCCCGTCTGCGGAAGAGCGGCTGCTTGTCTAACCATGCT
TGGGGGTGTAGTTAAGTGGGAGGTAAGAGAAAGCATGACTCGAGAGAAAA
ATGGGGTTTAACTTCACAGTTA
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protein sequence of jgi.p|Nanoce1779_2|573276

>mRNA_1738-protein ID=mRNA_1738-protein|Name=jgi.p|Nanoce1779_2|573276|organism=Nannochloropsis oceanica|type=polypeptide|length=251bp
MTTNIQQTMGQMGQFVERGVKQLVPSEMEHTVDEGQAILGRYLNMPFAFS
MEQEIRKARNICKNLKDFPAYLDGKLVSSQIKQADAVVFLTNARAGIFMT
GHVGSGLVVARNSDGSWSAPSAVFYLGSGMGLQGGADVTDYVVILKRQAV
DSFAGNNQLVLGGDVGATFWMGRHGTAELHIGKRTGMALGWAASKGFFAG
AAATAGYLCTRGGINKKFYGREVDPCDLLHGKISKPRAAKPLYEALNDLP
*
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mRNA from alignment at scaffold_1:1366363..1367584+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1738 ID=mRNA_1738|Name=jgi.p|Nanoce1779_2|573276|organism=Nannochloropsis oceanica|type=mRNA|length=1222bp|location=Sequence derived from alignment at scaffold_1:1366363..1367584+ (Nannochloropsis oceanica)
ACAGCAATATTCAGCTTTCTTCCGACTATCGACGCCACCGCCCTCACCGT
ATCAACACTGGCAGTAACGACGAAACAACAGCCAGCGAAATGACCACCAA
CATTCAGCAGACAATGGGGCAGATGGGGCAGTTCGTGGAACGTGGTGTGA
AGCAACTGGTACCCTCAGAAATGGAGCACACAGTGGACGAGGGCCAGGCC
ATTTTGGGGCGCTACCTGAACATGCCCTTCGCATTTAGCATGGAACAAGA
GATCCGTAAGGCTCGCAACATTTGCAAGAACCTCAAGGACTTCCCTGCCT
ACCTCGACGGCAAGCTGGTATCCTCTCAAATCAAGCAGGCCGACGCGGTG
GTATTCTTAACGAATGCCCGTGCGGGCATCTTTATGACGGGCCACGTCGG
GTCTGGCTTGGTAGTGGCACGCAACTCGGACGGGTCCTGGTCGGCGCCCT
CAGCCGTCTTCTACCTTGGCTCGGGTATGGGCCTGCAAGGCGGCGCAGAT
GTGACGGACTACGTGGTCATTCTGAAGCGCCAAGCTGTGGACTCCTTCGC
GGGTAACAACCAGCTGGTCTTGGGCGGCGACGTCGGCGCGACATTTTGGA
TGGGGCGTCACGGCACGGCTGAGCTCCATATTGGAAAGCGGACCGGTATG
GCATTGGGCTGGGCGGCGAGCAAAGGGTTTTTTGCAGGCGCAGCGGCCAC
AGCTGGCTATCTTTGCACTCGTGGTGGCATCAACAAGAAATTTTACGGCC
GTGAAGTGGACCCCTGTGACCTGCTCCACGGGAAGATCAGCAAGCCTCGA
GCCGCCAAGCCCCTGTACGAGGCCCTCAACGACTTGCCGTAATGTGCTGG
GCAGGAGAAGGAAGAAGGTAGAACAATTTTGGTGTTTGAGAAAGAAGGGC
AGTGGTCCTTAAACAGAAAGGAATGGAAGGTAAGGTTAGTGCGGTGCTTG
ACTTGTGTGGTACATGAAAGACGATATTGGCAGAAGCAGCAGTGGTCATT
TTAATAAGAACAACAACAATTCCAGCAACACGTATGAAGAAAGCCACGAA
GAGAGACAAGCAAGTGTCTGCATTGTTCATTATGTGTGTGTGCATGCGAG
GGTTCCGTATGTCCCGTCTGCGGAAGAGCGGCTGCTTGTCTAACCATGCT
TGGGGGTGTAGTTAAGTGGGAGGTAAGAGAAAGCATGACTCGAGAGAAAA
ATGGGGTTTAACTTCACAGTTA
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Coding sequence (CDS) from alignment at scaffold_1:1366363..1367584+

>mRNA_1738 ID=mRNA_1738|Name=jgi.p|Nanoce1779_2|573276|organism=Nannochloropsis oceanica|type=CDS|length=753bp|location=Sequence derived from alignment at scaffold_1:1366363..1367584+ (Nannochloropsis oceanica)
ATGACCACCAACATTCAGCAGACAATGGGGCAGATGGGGCAGTTCGTGGA
ACGTGGTGTGAAGCAACTGGTACCCTCAGAAATGGAGCACACAGTGGACG
AGGGCCAGGCCATTTTGGGGCGCTACCTGAACATGCCCTTCGCATTTAGC
ATGGAACAAGAGATCCGTAAGGCTCGCAACATTTGCAAGAACCTCAAGGA
CTTCCCTGCCTACCTCGACGGCAAGCTGGTATCCTCTCAAATCAAGCAGG
CCGACGCGGTGGTATTCTTAACGAATGCCCGTGCGGGCATCTTTATGACG
GGCCACGTCGGGTCTGGCTTGGTAGTGGCACGCAACTCGGACGGGTCCTG
GTCGGCGCCCTCAGCCGTCTTCTACCTTGGCTCGGGTATGGGCCTGCAAG
GCGGCGCAGATGTGACGGACTACGTGGTCATTCTGAAGCGCCAAGCTGTG
GACTCCTTCGCGGGTAACAACCAGCTGGTCTTGGGCGGCGACGTCGGCGC
GACATTTTGGATGGGGCGTCACGGCACGGCTGAGCTCCATATTGGAAAGC
GGACCGGTATGGCATTGGGCTGGGCGGCGAGCAAAGGGTTTTTTGCAGGC
GCAGCGGCCACAGCTGGCTATCTTTGCACTCGTGGTGGCATCAACAAGAA
ATTTTACGGCCGTGAAGTGGACCCCTGTGACCTGCTCCACGGGAAGATCA
GCAAGCCTCGAGCCGCCAAGCCCCTGTACGAGGCCCTCAACGACTTGCCG
TAA
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Synonyms
Publications