jgi.p|Nanoce1779_2|573271, mRNA_1736 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|573271
Unique Name	mRNA_1736
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1461
Alignment location	scaffold_1:1362749..1364209 +

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Properties


Property Name	Value
TranscriptId	573357
Track	FilteredModels2
ProteinId	573271

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:1362749..1364209 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|573271	gene_1736	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|573271	mRNA_1736-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1736	CDS_1736	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:1362749..1364209+
coding sequence from alignment at scaffold_1:1362749..1364209+

mRNA sequence

>mRNA_1736 ID=mRNA_1736|Name=jgi.p|Nanoce1779_2|573271|organism=Nannochloropsis oceanica|type=mRNA|length=1461bp
ATGGGGGGGGGCGGCCAGGTAGGTAGGCCGGAAGACGTAGTGCGAAGCAG
GGTTGGGATCTGAGGGCGGGATGGAGAGCGGGGCCGGGGGTGGAAAGGCA
AGGATGTCGTCGAGAGGGAGGGTGGGGTAGTTGCAGACCGCGCCAGAGTC
GGTGGCATAGGTGACCACAAGGCCACTTGGGGTTCCAAACGAAAGGAGCT
CGCCGGAGAGGGAAGTAGAGAGGCAGGACATGGGAGAGGGGGCCCCGATT
TGGTAGTCTTGGAGGTGGAAGAATGCGGTCTCGGCGGCCGTGACATTGAA
CGGATCGCAAGTGAGGAACTGACCTGTGCTGCCGGAGGCGACGAGAAGGC
GGTCCTTGTCCTTACCGGGGAGGAAGGAAAGGAGGGAGGGCGAGCCGAGG
GCGGGTGCGAAGGAGAGGGGGAGGGTTTGACGGAGCATCCGTAAATCAAA
TACCTTAATGAGCGGATCGGGCAAAAAGCGAGTGGGGGCCAGCCCGGAAC
GGTCGTAGGGGTTGAGGGAGCGACCTTGTGTCCCTGTAGCCACCACCAAG
TCGTCCCATGTACATAGACTCGTCACTGGTCCAGTGTATGCCTCCAACTC
CCTCTCGACCCCCTGGCGGGATCGCATCATCCCGTCTAAGAACCGCAGTC
GTCCATCGGTGCCTCCGGTGATAACGGCGCGATTACTCTCCATGCAGGCA
GAGGGGCTCGTGACGTCTATCATTCTTACCACGGTAAGACCTGTTACTAA
ATCAAGCTGCCAGACATGTCCTTGGTTTCCGCCCACCGTCAGATACTCCC
CTCCAAAAGCTGCCATGTGGTGGCTCCTAGGCACGTTCAAGGCCCCGCAC
GTAAACTCTTCTTTGCCGGCTTTCTTGTGGGCGCTGCCATTGCGGCTGCC
GTCGTCGCTATCGTCGCTGTCAGCCCCCCCTGCAGCGCGGCCACCCACAC
GGAGGCTTGCGGGGCTCGCCTGTTTCTTCCCACCCTCCATCTCTCCCTCC
TCCTCCCCCAGCATGGCCTTGGAGGGAGCCCCACAAATGGCCAGACAATT
CCGATTGTGCATCCTCACTTCTTTCCCCGAGATGGAAATCACACCCTCCC
CAAAACAACGGATCTGCCGCACGGGGCATGGATGCGCCATGACAGATACA
TGCTTGTGCATGGTCGGCTGGGCCAGGGCAGAGAGGCGGCCGTTGCCCGT
GCCGACCCACAGGAGCTCCTCGATAGGGTCGAACGCCAGAGCCGTGATGG
GGAAGCCATCACTAGGCACACGACCGAGCTCAGCCCAGCTCCCTGGAACG
TGGCCCTCCGTAGGGCCGTCGAGCTCCTCGTCCTCGTGGTAGCCCGACCG
GGAGAATGGGGGGTCCTCCTCCTCCTCCTCCTCCTCCTGCTGCTGCTGCT
GCTGCTGCCCTGGCGGGATGAAGGGAGCACTCAGGCCGTTCATGGCTGAG
TGAGGAGGTCG

protein sequence of jgi.p|Nanoce1779_2|573271

>mRNA_1736-protein ID=mRNA_1736-protein|Name=jgi.p|Nanoce1779_2|573271|organism=Nannochloropsis oceanica|type=polypeptide|length=228bp
MSLVSAHRQILPSKSCHVVAPRHVQGPARKLFFAGFLVGAAIAAAVVAIV
AVSPPCSAATHTEACGARLFLPTLHLSLLLPQHGLGGSPTNGQTIPIVHP
HFFPRDGNHTLPKTTDLPHGAWMRHDRYMLVHGRLGQGREAAVARADPQE
LLDRVERQSRDGEAITRHTTELSPAPWNVALRRAVELLVLVVARPGEWGV
LLLLLLLLLLLLLLPWRDEGSTQAVHG*

mRNA from alignment at scaffold_1:1362749..1364209+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1736 ID=mRNA_1736|Name=jgi.p|Nanoce1779_2|573271|organism=Nannochloropsis oceanica|type=mRNA|length=1461bp|location=Sequence derived from alignment at scaffold_1:1362749..1364209+ (Nannochloropsis oceanica)
ATGGGGGGGGGCGGCCAGGTAGGTAGGCCGGAAGACGTAGTGCGAAGCAG
GGTTGGGATCTGAGGGCGGGATGGAGAGCGGGGCCGGGGGTGGAAAGGCA
AGGATGTCGTCGAGAGGGAGGGTGGGGTAGTTGCAGACCGCGCCAGAGTC
GGTGGCATAGGTGACCACAAGGCCACTTGGGGTTCCAAACGAAAGGAGCT
CGCCGGAGAGGGAAGTAGAGAGGCAGGACATGGGAGAGGGGGCCCCGATT
TGGTAGTCTTGGAGGTGGAAGAATGCGGTCTCGGCGGCCGTGACATTGAA
CGGATCGCAAGTGAGGAACTGACCTGTGCTGCCGGAGGCGACGAGAAGGC
GGTCCTTGTCCTTACCGGGGAGGAAGGAAAGGAGGGAGGGCGAGCCGAGG
GCGGGTGCGAAGGAGAGGGGGAGGGTTTGACGGAGCATCCGTAAATCAAA
TACCTTAATGAGCGGATCGGGCAAAAAGCGAGTGGGGGCCAGCCCGGAAC
GGTCGTAGGGGTTGAGGGAGCGACCTTGTGTCCCTGTAGCCACCACCAAG
TCGTCCCATGTACATAGACTCGTCACTGGTCCAGTGTATGCCTCCAACTC
CCTCTCGACCCCCTGGCGGGATCGCATCATCCCGTCTAAGAACCGCAGTC
GTCCATCGGTGCCTCCGGTGATAACGGCGCGATTACTCTCCATGCAGGCA
GAGGGGCTCGTGACGTCTATCATTCTTACCACGGTAAGACCTGTTACTAA
ATCAAGCTGCCAGACATGTCCTTGGTTTCCGCCCACCGTCAGATACTCCC
CTCCAAAAGCTGCCATGTGGTGGCTCCTAGGCACGTTCAAGGCCCCGCAC
GTAAACTCTTCTTTGCCGGCTTTCTTGTGGGCGCTGCCATTGCGGCTGCC
GTCGTCGCTATCGTCGCTGTCAGCCCCCCCTGCAGCGCGGCCACCCACAC
GGAGGCTTGCGGGGCTCGCCTGTTTCTTCCCACCCTCCATCTCTCCCTCC
TCCTCCCCCAGCATGGCCTTGGAGGGAGCCCCACAAATGGCCAGACAATT
CCGATTGTGCATCCTCACTTCTTTCCCCGAGATGGAAATCACACCCTCCC
CAAAACAACGGATCTGCCGCACGGGGCATGGATGCGCCATGACAGATACA
TGCTTGTGCATGGTCGGCTGGGCCAGGGCAGAGAGGCGGCCGTTGCCCGT
GCCGACCCACAGGAGCTCCTCGATAGGGTCGAACGCCAGAGCCGTGATGG
GGAAGCCATCACTAGGCACACGACCGAGCTCAGCCCAGCTCCCTGGAACG
TGGCCCTCCGTAGGGCCGTCGAGCTCCTCGTCCTCGTGGTAGCCCGACCG
GGAGAATGGGGGGTCCTCCTCCTCCTCCTCCTCCTCCTGCTGCTGCTGCT
GCTGCTGCCCTGGCGGGATGAAGGGAGCACTCAGGCCGTTCATGGCTGAG
TGAGGAGGTCG

Coding sequence (CDS) from alignment at scaffold_1:1362749..1364209+

>mRNA_1736 ID=mRNA_1736|Name=jgi.p|Nanoce1779_2|573271|organism=Nannochloropsis oceanica|type=CDS|length=684bp|location=Sequence derived from alignment at scaffold_1:1362749..1364209+ (Nannochloropsis oceanica)
ATGTCCTTGGTTTCCGCCCACCGTCAGATACTCCCCTCCAAAAGCTGCCA
TGTGGTGGCTCCTAGGCACGTTCAAGGCCCCGCACGTAAACTCTTCTTTG
CCGGCTTTCTTGTGGGCGCTGCCATTGCGGCTGCCGTCGTCGCTATCGTC
GCTGTCAGCCCCCCCTGCAGCGCGGCCACCCACACGGAGGCTTGCGGGGC
TCGCCTGTTTCTTCCCACCCTCCATCTCTCCCTCCTCCTCCCCCAGCATG
GCCTTGGAGGGAGCCCCACAAATGGCCAGACAATTCCGATTGTGCATCCT
CACTTCTTTCCCCGAGATGGAAATCACACCCTCCCCAAAACAACGGATCT
GCCGCACGGGGCATGGATGCGCCATGACAGATACATGCTTGTGCATGGTC
GGCTGGGCCAGGGCAGAGAGGCGGCCGTTGCCCGTGCCGACCCACAGGAG
CTCCTCGATAGGGTCGAACGCCAGAGCCGTGATGGGGAAGCCATCACTAG
GCACACGACCGAGCTCAGCCCAGCTCCCTGGAACGTGGCCCTCCGTAGGG
CCGTCGAGCTCCTCGTCCTCGTGGTAGCCCGACCGGGAGAATGGGGGGTC
CTCCTCCTCCTCCTCCTCCTCCTGCTGCTGCTGCTGCTGCTGCCCTGGCG
GGATGAAGGGAGCACTCAGGCCGTTCATGGCTGA

Synonyms

Publications