jgi.p|Nanoce1779_2|522035, mRNA_1735 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|522035
Unique NamemRNA_1735
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length432
Alignment locationscaffold_1:1363010..1363441 -

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Properties
Property NameValue
TranscriptId522121
TrackFilteredModels2
ProteinId522035
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:1363010..1363441 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|522035gene_1735Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1735CDS_1735Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|522035mRNA_1735-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1735 ID=mRNA_1735|Name=jgi.p|Nanoce1779_2|522035|organism=Nannochloropsis oceanica|type=mRNA|length=432bp
ATGGAGAGTAATCGCGCCGTTATCACCGGAGGCACCGATGGACGACTGCG
GTTCTTAGACGGGATGATGCGATCCCGCCAGGGGGTCGAGAGGGAGTTGG
AGGCATACACTGGACCAGTGACGAGTCTATGTACATGGGACGACTTGGTG
GTGGCTACAGGGACACAAGGTCGCTCCCTCAACCCCTACGACCGTTCCGG
GCTGGCCCCCACTCGCTTTTTGCCCGATCCGCTCATTAAGGTATTTGATT
TACGGATGCTCCGTCAAACCCTCCCCCTCTCCTTCGCACCCGCCCTCGGC
TCGCCCTCCCTCCTTTCCTTCCTCCCCGGTAAGGACAAGGACCGCCTTCT
CGTCGCCTCCGGCAGCACAGGTCAGTTCCTCACTTGCGATCCGTTCAATG
TCACGGCCGCCGAGACCGCATTCTTCCACCTC
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protein sequence of jgi.p|Nanoce1779_2|522035

>mRNA_1735-protein ID=mRNA_1735-protein|Name=jgi.p|Nanoce1779_2|522035|organism=Nannochloropsis oceanica|type=polypeptide|length=144bp
MESNRAVITGGTDGRLRFLDGMMRSRQGVERELEAYTGPVTSLCTWDDLV
VATGTQGRSLNPYDRSGLAPTRFLPDPLIKVFDLRMLRQTLPLSFAPALG
SPSLLSFLPGKDKDRLLVASGSTGQFLTCDPFNVTAAETAFFHL
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mRNA from alignment at scaffold_1:1363010..1363441-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1735 ID=mRNA_1735|Name=jgi.p|Nanoce1779_2|522035|organism=Nannochloropsis oceanica|type=mRNA|length=432bp|location=Sequence derived from alignment at scaffold_1:1363010..1363441- (Nannochloropsis oceanica)
ATGGAGAGTAATCGCGCCGTTATCACCGGAGGCACCGATGGACGACTGCG
GTTCTTAGACGGGATGATGCGATCCCGCCAGGGGGTCGAGAGGGAGTTGG
AGGCATACACTGGACCAGTGACGAGTCTATGTACATGGGACGACTTGGTG
GTGGCTACAGGGACACAAGGTCGCTCCCTCAACCCCTACGACCGTTCCGG
GCTGGCCCCCACTCGCTTTTTGCCCGATCCGCTCATTAAGGTATTTGATT
TACGGATGCTCCGTCAAACCCTCCCCCTCTCCTTCGCACCCGCCCTCGGC
TCGCCCTCCCTCCTTTCCTTCCTCCCCGGTAAGGACAAGGACCGCCTTCT
CGTCGCCTCCGGCAGCACAGGTCAGTTCCTCACTTGCGATCCGTTCAATG
TCACGGCCGCCGAGACCGCATTCTTCCACCTC
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Coding sequence (CDS) from alignment at scaffold_1:1363010..1363441-

>mRNA_1735 ID=mRNA_1735|Name=jgi.p|Nanoce1779_2|522035|organism=Nannochloropsis oceanica|type=CDS|length=432bp|location=Sequence derived from alignment at scaffold_1:1363010..1363441- (Nannochloropsis oceanica)
ATGGAGAGTAATCGCGCCGTTATCACCGGAGGCACCGATGGACGACTGCG
GTTCTTAGACGGGATGATGCGATCCCGCCAGGGGGTCGAGAGGGAGTTGG
AGGCATACACTGGACCAGTGACGAGTCTATGTACATGGGACGACTTGGTG
GTGGCTACAGGGACACAAGGTCGCTCCCTCAACCCCTACGACCGTTCCGG
GCTGGCCCCCACTCGCTTTTTGCCCGATCCGCTCATTAAGGTATTTGATT
TACGGATGCTCCGTCAAACCCTCCCCCTCTCCTTCGCACCCGCCCTCGGC
TCGCCCTCCCTCCTTTCCTTCCTCCCCGGTAAGGACAAGGACCGCCTTCT
CGTCGCCTCCGGCAGCACAGGTCAGTTCCTCACTTGCGATCCGTTCAATG
TCACGGCCGCCGAGACCGCATTCTTCCACCTC
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Synonyms
Publications