jgi.p|Nanoce1779_2|627025, mRNA_1733 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|627025
Unique Name	mRNA_1733
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1826
Alignment location	scaffold_1:1356771..1359231 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	627111
Track	FilteredModels2
ProteinId	627025

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:1356771..1359231 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|627025	gene_1733	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|627025	mRNA_1733-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1733	CDS_1733	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:1356771..1359231+
coding sequence from alignment at scaffold_1:1356771..1359231+

mRNA sequence

>mRNA_1733 ID=mRNA_1733|Name=jgi.p|Nanoce1779_2|627025|organism=Nannochloropsis oceanica|type=mRNA|length=1826bp
GGGGGGGCTTTGCCAGGAAGAGAGGGCGGGAGGGTGAGGAATAATAATGC
CTACTTGTTGTTCTATCAGCATAAATTGGTGGATGTGCCGCATCAGCAGC
CGGAGCAGCACCCGCCGCTTCACAAGCTCCAGCACCAGCACCAAAACCAG
CACCGGCAGCAAAAGCAGTCATCACGGAAGAGAGAGATGACGGAGATGGG
AATGGAGGGGGAAGAGGAGGAGGAAGGGGGGGAGGGAGAGGGGGAGCAGA
CACCCCTACCTTCCCCTGTGACAGCGAGCAAACAAGAGCAGCGAGAGCGA
GGCGTGCTCTGGGGAATGAGGAAAGAGAGTGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGATGAAGGGGAGAAGGAAGGGGTGTTGTCCG
CGTTGGTGCTGGCGAGGCGGCGAAGGGAGAGACTGGCGTCTGAGAGGGCG
AATAGCTTTGGCACGTATTTGGAAGCATATGACATCGTCGGGAAGTGGTG
CGTTTGGTGGTGGCGGCAGCGAAGGAGGTGGTACAAGGAAGAGGAGGAGG
AGCAGCAGCAGCAGGAGGAGGAGACGGAGGGGGAGGAATAAGAGGGTTGC
TGGAATTGAGAGAGGGAGGGAGGGAGTTGGCGCATCCCTTGGCCAGGTTG
GTGGCGTGGTATTTGGTGGTGATCACGCATTGTGCCGGGACAGATGGTTG
GCTCTTCTCGCCTCCGCTTACCGAAGCGGAGGAGGAGGCAGGAAGGAGGG
AGGGAGGGCCTCATACCAATGTATTCGCCTCTTCATCGACAGGGATGAGG
GCAGGAAGCATTTCCTTCAACATTACTCCGGAGGTACTTCTCCTCCTGCT
GGAGCTGGCCTCCCTCGGCCCCGCCCTCCGTCAGCTCCTCCGCAGCCTGG
GAGGAATCGGACGTCTAGCTGCCCTGGTCGCTTCCGTTAATGGTGGCGAT
AATCGTCACCTCCTCCCCAACTTTCCCCTGCTTGCCCAGGAGGTCATCGC
TCTCGCCCTTCGTCTCCTTGCTACCTTAGCTGAAGATGCCTCTCCGAACG
AGCTTCACTCCCCCTTCCATCTCTCCACGCTTTCCTCCCGCCGCTTTGTC
GAAATGGCAGCGACGCTCCACCCTCAAGATACCTCCCTCCTCCTGGCCAA
GTTTGTCGCAATGACGGCCCCCTCGTCCTCTCTCGATCCTTCCCACCTCA
TCATCGACCAGCAGCAAAACGTCGCGGCCGCTACCGCTGCCGTCATTCGT
GTCCTTGTGGACCGAGCGTTGGAAGCCACTGCGCTTGTCAGTCAGCCCCC
TGCCCCCCTCCCTGCCTTTACATCCTTTCCTAACCCGTCTCCTTCCTATG
CGATGTATATGGAGCACCAACGGCGTCTGATTGCATTAGGGCCCAAACCA
CTCCTGCGGGTGTTGCAGGCCGTGCTGGGAGTAGCGGGAGAGGGAGGGAG
GGAGGGAGAGGAGCAGCAGACATGGCGGCTGGAGCAGTCTCTGTCACTGC
TGGACCAATGCTCACGTTTGATGGCTCGAGGACGGGGTGGAGTGGAAGGG
AGGGGGGGAGGGAGGGGGGAATATGGAGGAGAGATGGATTTGGTATGGGG
TGTGGCTAAATTGTATTTTTCTTTGGCGGCACGATCACCCGTGGCAACGA
AATTTGTGCGGACAAGAGTGGAGAGAGTGGTGAGGGAGTGGCGGCAAATG
ATGGGGACGATGGGAGGGGGCGGAGGAAGAGGAGGGAAGAGGTGAGATTG
CGTAAGGGAGTGAGGGTACAAATGTGGGGAAAGGGATGGGTAGAGAGATC
AAGGAGTGTGAGTAAAAATGAAAGCG

protein sequence of jgi.p|Nanoce1779_2|627025

>mRNA_1733-protein ID=mRNA_1733-protein|Name=jgi.p|Nanoce1779_2|627025|organism=Nannochloropsis oceanica|type=polypeptide|length=317bp
MRAGSISFNITPEVLLLLLELASLGPALRQLLRSLGGIGRLAALVASVNG
GDNRHLLPNFPLLAQEVIALALRLLATLAEDASPNELHSPFHLSTLSSRR
FVEMAATLHPQDTSLLLAKFVAMTAPSSSLDPSHLIIDQQQNVAAATAAV
IRVLVDRALEATALVSQPPAPLPAFTSFPNPSPSYAMYMEHQRRLIALGP
KPLLRVLQAVLGVAGEGGREGEEQQTWRLEQSLSLLDQCSRLMARGRGGV
EGRGGGRGEYGGEMDLVWGVAKLYFSLAARSPVATKFVRTRVERVVREWR
QMMGTMGGGGGRGGKR*

mRNA from alignment at scaffold_1:1356771..1359231+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1733 ID=mRNA_1733|Name=jgi.p|Nanoce1779_2|627025|organism=Nannochloropsis oceanica|type=mRNA|length=2461bp|location=Sequence derived from alignment at scaffold_1:1356771..1359231+ (Nannochloropsis oceanica)
GGGGGGGCTTTGCCAGGAAGAGAGGGCGGGAGGGTGAGGAATAATAATGC
CTACTTGTTGTTCTATCAGCATAAATTGGTGGATGTGCCGCATCAGCAGC
CGGAGCAGCACCCGCCGCTTCACAAGCTCCAGCACCAGCACCAAAACCAG
CACCGGCAGCAAAAGCAGTCATCACGGAAGAGAGAGATGACGGAGATGGG
AATGGAGGGGGAAGAGGAGGAGGAAGGGGGGGAGGGAGAGGGGGAGCAGA
CACCCCTACCTTCCCCTGTGACAGCGAGCAAACAAGAGCAGCGAGAGCGA
GGCGTGCTCTGGGGAATGAGGAAAGAGAGTGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGATGAAGGGGAGAAGGAAGGGGTGTTGTCCG
CGTTGGTGCTGGCGAGGCGGCGAAGGGAGAGACTGGCGTCTGAGAGGGCG
AATAGCTTTGGCACGTATTTGGAAGCATATGACAGTAGCAGCAAAGTCAA
GGGCCACAGTGCTGGAAGAGAAGGACGAGGGGGGGGGAGGGGAGGAGGAC
GAGGAATAGGAACAGGCTTTCCGTCCGCGTTGGTCCGGGCAGCAGGAGGA
GGAGGAGGACGAGGAGAGAGAGGGAGGGGGGGTCGCGCCTCCTTTGTCTC
ATCCCTCCTCCTCCTCGCCGGCAGGCACAGCCCTCTGCCTGCCCCTGGCC
GTGCGTCGCACAGTGTGGGAAGAGAACATGACGTTCTTTCAGGACAAGCA
TCGTTTCGATCCTCACTACGCCCGCTTTGTCTGGCAGCTCCTCGGTGCCC
TCTCCTCCCTCCCTCCCTCGTCCTCCTCCTCCACGGCAGCAGCTGCTCAT
TTGAGGGCGTACGGCGCGGGCCTTCGCTTCGTTTTGGAGGTGTTAATACA
TGGTCGTGCCTCCTCCTGCCTCCCTCTCTGGTTTCAAACCCTTCATTCCC
TCCTCCTCCAACCCGACGAGGACGGGGATGAGGACGAAGGCAGGAGGGAC
GGCGGGAGGGAGGGAAGGGTGCGGAGGTGCGGATTGTGGACGTTGATGTA
CTTGGCAGATGACCCTCAGGGAAGGAAGGAGGGGATGCAGGCCCTCCTGT
CCTGCCCTCATCTCCCCAGTCGTCGGGAAGTGGTGCGTTTGGTGGTGGCG
GCAGCGAAGGAGGTGGTACAAGGAAGAGGAGGAGGAGCAGCAGCAGCAGG
AGGAGGAGACGGAGGGGGAGGAATAAGAGGGTTGCTGGAATTGAGAGAGG
GAGGGAGGGAGTTGGCGCATCCCTTGGCCAGGTTGGTGGCGTGGTATTTG
GTGGTGATCACGCATTGTGCCGGGACAGATGGTTGGCTCTTCTCGCCTCC
GCTTACCGAAGCGGAGGAGGAGGCAGGAAGGAGGGAGGGAGGGCCTCATA
CCAATGTATTCGCCTCTTCATCGACAGGGATGAGGGCAGGAAGCATTTCC
TTCAACATTACTCCGGAGGTACTTCTCCTCCTGCTGGAGCTGGCCTCCCT
CGGCCCCGCCCTCCGTCAGCTCCTCCGCAGCCTGGGAGGAATCGGACGTC
TAGCTGCCCTGGTCGCTTCCGTTAATGGTGGCGATAATCGTCACCTCCTC
CCCAACTTTCCCCTGCTTGCCCAGGAGGTCATCGCTCTCGCCCTTCGTCT
CCTTGCTACCTTAGCTGAAGATGCCTCTCCGAACGAGCTTCACTCCCCCT
TCCATCTCTCCACGCTTTCCTCCCGCCGCTTTGTCGAAATGGCAGCGACG
CTCCACCCTCAAGATACCTCCCTCCTCCTGGCCAAGTTTGTCGCAATGAC
GGCCCCCTCGTCCTCTCTCGATCCTTCCCACCTCATCATCGACCAGCAGC
AAAACGTCGCGGCCGCTACCGCTGCCGTCATTCGTGTCCTTGTGGACCGA
GCGTTGGAAGCCACTGCGCTTGTCAGTCAGCCCCCTGCCCCCCTCCCTGC
CTTTACATCCTTTCCTAACCCGTCTCCTTCCTATGCGATGTATATGGAGC
ACCAACGGCGTCTGATTGCATTAGGGCCCAAACCACTCCTGCGGGTGTTG
CAGGCCGTGCTGGGAGTAGCGGGAGAGGGAGGGAGGGAGGGAGAGGAGCA
GCAGACATGGCGGCTGGAGCAGTCTCTGTCACTGCTGGACCAATGCTCAC
GTTTGATGGCTCGAGGACGGGGTGGAGTGGAAGGGAGGGGGGGAGGGAGG
GGGGAATATGGAGGAGAGATGGATTTGGTATGGGGTGTGGCTAAATTGTA
TTTTTCTTTGGCGGCACGATCACCCGTGGCAACGAAATTTGTGCGGACAA
GAGTGGAGAGAGTGGTGAGGGAGTGGCGGCAAATGATGGGGACGATGGGA
GGGGGCGGAGGAAGAGGAGGGAAGAGGTGAGATTGCGTAAGGGAGTGAGG
GTACAAATGTGGGGAAAGGGATGGGTAGAGAGATCAAGGAGTGTGAGTAA
AAATGAAAGCG

Coding sequence (CDS) from alignment at scaffold_1:1356771..1359231+

>mRNA_1733 ID=mRNA_1733|Name=jgi.p|Nanoce1779_2|627025|organism=Nannochloropsis oceanica|type=CDS|length=951bp|location=Sequence derived from alignment at scaffold_1:1356771..1359231+ (Nannochloropsis oceanica)
ATGAGGGCAGGAAGCATTTCCTTCAACATTACTCCGGAGGTACTTCTCCT
CCTGCTGGAGCTGGCCTCCCTCGGCCCCGCCCTCCGTCAGCTCCTCCGCA
GCCTGGGAGGAATCGGACGTCTAGCTGCCCTGGTCGCTTCCGTTAATGGT
GGCGATAATCGTCACCTCCTCCCCAACTTTCCCCTGCTTGCCCAGGAGGT
CATCGCTCTCGCCCTTCGTCTCCTTGCTACCTTAGCTGAAGATGCCTCTC
CGAACGAGCTTCACTCCCCCTTCCATCTCTCCACGCTTTCCTCCCGCCGC
TTTGTCGAAATGGCAGCGACGCTCCACCCTCAAGATACCTCCCTCCTCCT
GGCCAAGTTTGTCGCAATGACGGCCCCCTCGTCCTCTCTCGATCCTTCCC
ACCTCATCATCGACCAGCAGCAAAACGTCGCGGCCGCTACCGCTGCCGTC
ATTCGTGTCCTTGTGGACCGAGCGTTGGAAGCCACTGCGCTTGTCAGTCA
GCCCCCTGCCCCCCTCCCTGCCTTTACATCCTTTCCTAACCCGTCTCCTT
CCTATGCGATGTATATGGAGCACCAACGGCGTCTGATTGCATTAGGGCCC
AAACCACTCCTGCGGGTGTTGCAGGCCGTGCTGGGAGTAGCGGGAGAGGG
AGGGAGGGAGGGAGAGGAGCAGCAGACATGGCGGCTGGAGCAGTCTCTGT
CACTGCTGGACCAATGCTCACGTTTGATGGCTCGAGGACGGGGTGGAGTG
GAAGGGAGGGGGGGAGGGAGGGGGGAATATGGAGGAGAGATGGATTTGGT
ATGGGGTGTGGCTAAATTGTATTTTTCTTTGGCGGCACGATCACCCGTGG
CAACGAAATTTGTGCGGACAAGAGTGGAGAGAGTGGTGAGGGAGTGGCGG
CAAATGATGGGGACGATGGGAGGGGGCGGAGGAAGAGGAGGGAAGAGGTG
A

Synonyms

Publications