jgi.p|Nanoce1779_2|15946, mRNA_1732 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|15946
Unique Name	mRNA_1732
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1592
Alignment location	scaffold_1:1356311..1357902 +

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Properties


Property Name	Value
TranscriptId	16032
Track	FilteredModels2
ProteinId	15946

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:1356311..1357902 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|15946	gene_1732	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|15946	mRNA_1732-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1732	CDS_1732	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:1356311..1357902+
coding sequence from alignment at scaffold_1:1356311..1357902+

mRNA sequence

>mRNA_1732 ID=mRNA_1732|Name=jgi.p|Nanoce1779_2|15946|organism=Nannochloropsis oceanica|type=mRNA|length=1592bp
GGGGGAGGAAGGGGGGGAGGGAGGGGAGGAGGGAAGAAAGGCACCGATGC
TGGGGGCATTGGGGTCGTCGTTTTTCTCTTCATCGAGGGGCCTGCTGCTG
GCGTCCTCCCTCTCGTCCTCCTCTGGTTTGTTCTCTTCGATGGGAGGGGA
AGGAGGGGAGGGGGGAACAGGGAGCTCGCTTCCCCTCCATCCATCGTCCT
CGGCCTCGACCCGGAGGTATCTTTACGAGTTGAAGGGGGTGGTGGCCCAT
GTGGGCACAAGCGACAGTGGACATTATTACTCCTTCATCAAGGAGGAGGA
TGAGGACGCGGGGGAGGACGGGGGGGAAGGAGGGCGGTGGTTTGAGTATA
ATGACCAGGTGGTGTCGCCCTTTGATCCGTCTCTGATTCCAAAAGAGTGT
TTTGGGGGGACAGAGCCTCCTCCTCCTTTGCTATCCGTAGTGCACGCAAC
GGGAGGGAGGGGGGGGGCTTTGCCAGGAAGAGAGGGCGGGAGGGTGAGGA
ATAATAATGCCTACTTGTTGTTCTATCAGCATAAATTGGTGGATGTGCCG
CATCAGCAGCCGGAGCAGCACCCGCCGCTTCACAAGCTCCAGCACCAGCA
CCAAAACCAGCACCGGCAGCAAAAGCAGTCATCACGGAAGAGAGAGATGA
CGGAGATGGGAATGGAGGGGGAAGAGGAGGAGGAAGGGGGGGAGGGAGAG
GGGGAGCAGACACCCCTACCTTCCCCTGTGACAGCGAGCAAACAAGAGCA
GCGAGAGCGAGGCGTGCTCTGGGGAATGAGGAAAGAGAGTGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGATGAAGGGGAGAAGGAAGGG
GTGTTGTCCGCGTTGGTGCTGGCGAGGCGGCGAAGGGAGAGACTGGCGTC
TGAGAGGGCGAATAGCTTTGGCACGTATTTGGAAGCATATGACAGTAGCA
GCAAAGTCAAGGGCCACAGTGCTGGAAGAGAAGGACGAGGGGGGGGGAGG
GGAGGAGGACGAGGAATAGGAACAGGCTTTCCGTCCGCGTTGGTCCGGGC
AGCAGGAGGAGGAGGAGGACGAGGAGAGAGAGGGAGGGGGGGTCGCGCCT
CCTTTGTCTCATCCCTCCTCCTCCTCGCCGGCAGGCACAGCCCTCTGCCT
GCCCCTGGCCGTGCGTCGCACAGTGTGGGAAGAGAACATGACGTTCTTTC
AGGACAAGCATCGTTTCGATCCTCACTACGCCCGCTTTGTCTGGCAGCTC
CTCGGTGCCCTCTCCTCCCTCCCTCCCTCGTCCTCCTCCTCCACGGCAGC
AGCTGCTCATTTGAGGGCGTACGGCGCGGGCCTTCGCTTCGTTTTGGAGG
TGTTAATACATGGTCGTGCCTCCTCCTGCCTCCCTCTCTGGTTTCAAACC
CTTCATTCCCTCCTCCTCCAACCCGACGAGGACGGGGATGAGGACGAAGG
CAGGAGGGACGGCGGGAGGGAGGGAAGGGTGCGGAGGTGCGGATTGTGGA
CGTTGATGTACTTGGCAGATGACCCTCAGGGAAGGAAGGAGGGGATGCAG
GCCCTCCTGTCCTGCCCTCATCTCCCCAGTCGTCGGGAAGTG

protein sequence of jgi.p|Nanoce1779_2|15946

>mRNA_1732-protein ID=mRNA_1732-protein|Name=jgi.p|Nanoce1779_2|15946|organism=Nannochloropsis oceanica|type=polypeptide|length=465bp
MLGALGSSFFSSSRGLLLASSLSSSSGLFSSMGGEGGEGGTGSSLPLHPS
SSASTRRYLYELKGVVAHVGTSDSGHYYSFIKEEDEDAGEDGGEGGRWFE
YNDQVVSPFDPSLIPKECFGGTEPPPPLLSVVHATGGRGGALPGREGGRV
RNNNAYLLFYQHKLVDVPHQQPEQHPPLHKLQHQHQNQHRQQKQSSRKRE
MTEMGMEGEEEEEGGEGEGEQTPLPSPVTASKQEQRERGVLWGMRKESEE
EEEEEEEEEEEDEGEKEGVLSALVLARRRRERLASERANSFGTYLEAYDS
SSKVKGHSAGREGRGGGRGGGRGIGTGFPSALVRAAGGGGGRGERGRGGR
ASFVSSLLLLAGRHSPLPAPGRASHSVGREHDVLSGQASFRSSLRPLCLA
APRCPLLPPSLVLLLHGSSCSFEGVRRGPSLRFGGVNTWSCLLLPPSLVS
NPSFPPPPTRRGRG*

mRNA from alignment at scaffold_1:1356311..1357902+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1732 ID=mRNA_1732|Name=jgi.p|Nanoce1779_2|15946|organism=Nannochloropsis oceanica|type=mRNA|length=1592bp|location=Sequence derived from alignment at scaffold_1:1356311..1357902+ (Nannochloropsis oceanica)
GGGGGAGGAAGGGGGGGAGGGAGGGGAGGAGGGAAGAAAGGCACCGATGC
TGGGGGCATTGGGGTCGTCGTTTTTCTCTTCATCGAGGGGCCTGCTGCTG
GCGTCCTCCCTCTCGTCCTCCTCTGGTTTGTTCTCTTCGATGGGAGGGGA
AGGAGGGGAGGGGGGAACAGGGAGCTCGCTTCCCCTCCATCCATCGTCCT
CGGCCTCGACCCGGAGGTATCTTTACGAGTTGAAGGGGGTGGTGGCCCAT
GTGGGCACAAGCGACAGTGGACATTATTACTCCTTCATCAAGGAGGAGGA
TGAGGACGCGGGGGAGGACGGGGGGGAAGGAGGGCGGTGGTTTGAGTATA
ATGACCAGGTGGTGTCGCCCTTTGATCCGTCTCTGATTCCAAAAGAGTGT
TTTGGGGGGACAGAGCCTCCTCCTCCTTTGCTATCCGTAGTGCACGCAAC
GGGAGGGAGGGGGGGGGCTTTGCCAGGAAGAGAGGGCGGGAGGGTGAGGA
ATAATAATGCCTACTTGTTGTTCTATCAGCATAAATTGGTGGATGTGCCG
CATCAGCAGCCGGAGCAGCACCCGCCGCTTCACAAGCTCCAGCACCAGCA
CCAAAACCAGCACCGGCAGCAAAAGCAGTCATCACGGAAGAGAGAGATGA
CGGAGATGGGAATGGAGGGGGAAGAGGAGGAGGAAGGGGGGGAGGGAGAG
GGGGAGCAGACACCCCTACCTTCCCCTGTGACAGCGAGCAAACAAGAGCA
GCGAGAGCGAGGCGTGCTCTGGGGAATGAGGAAAGAGAGTGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGATGAAGGGGAGAAGGAAGGG
GTGTTGTCCGCGTTGGTGCTGGCGAGGCGGCGAAGGGAGAGACTGGCGTC
TGAGAGGGCGAATAGCTTTGGCACGTATTTGGAAGCATATGACAGTAGCA
GCAAAGTCAAGGGCCACAGTGCTGGAAGAGAAGGACGAGGGGGGGGGAGG
GGAGGAGGACGAGGAATAGGAACAGGCTTTCCGTCCGCGTTGGTCCGGGC
AGCAGGAGGAGGAGGAGGACGAGGAGAGAGAGGGAGGGGGGGTCGCGCCT
CCTTTGTCTCATCCCTCCTCCTCCTCGCCGGCAGGCACAGCCCTCTGCCT
GCCCCTGGCCGTGCGTCGCACAGTGTGGGAAGAGAACATGACGTTCTTTC
AGGACAAGCATCGTTTCGATCCTCACTACGCCCGCTTTGTCTGGCAGCTC
CTCGGTGCCCTCTCCTCCCTCCCTCCCTCGTCCTCCTCCTCCACGGCAGC
AGCTGCTCATTTGAGGGCGTACGGCGCGGGCCTTCGCTTCGTTTTGGAGG
TGTTAATACATGGTCGTGCCTCCTCCTGCCTCCCTCTCTGGTTTCAAACC
CTTCATTCCCTCCTCCTCCAACCCGACGAGGACGGGGATGAGGACGAAGG
CAGGAGGGACGGCGGGAGGGAGGGAAGGGTGCGGAGGTGCGGATTGTGGA
CGTTGATGTACTTGGCAGATGACCCTCAGGGAAGGAAGGAGGGGATGCAG
GCCCTCCTGTCCTGCCCTCATCTCCCCAGTCGTCGGGAAGTG

Coding sequence (CDS) from alignment at scaffold_1:1356311..1357902+

>mRNA_1732 ID=mRNA_1732|Name=jgi.p|Nanoce1779_2|15946|organism=Nannochloropsis oceanica|type=CDS|length=1395bp|location=Sequence derived from alignment at scaffold_1:1356311..1357902+ (Nannochloropsis oceanica)
ATGCTGGGGGCATTGGGGTCGTCGTTTTTCTCTTCATCGAGGGGCCTGCT
GCTGGCGTCCTCCCTCTCGTCCTCCTCTGGTTTGTTCTCTTCGATGGGAG
GGGAAGGAGGGGAGGGGGGAACAGGGAGCTCGCTTCCCCTCCATCCATCG
TCCTCGGCCTCGACCCGGAGGTATCTTTACGAGTTGAAGGGGGTGGTGGC
CCATGTGGGCACAAGCGACAGTGGACATTATTACTCCTTCATCAAGGAGG
AGGATGAGGACGCGGGGGAGGACGGGGGGGAAGGAGGGCGGTGGTTTGAG
TATAATGACCAGGTGGTGTCGCCCTTTGATCCGTCTCTGATTCCAAAAGA
GTGTTTTGGGGGGACAGAGCCTCCTCCTCCTTTGCTATCCGTAGTGCACG
CAACGGGAGGGAGGGGGGGGGCTTTGCCAGGAAGAGAGGGCGGGAGGGTG
AGGAATAATAATGCCTACTTGTTGTTCTATCAGCATAAATTGGTGGATGT
GCCGCATCAGCAGCCGGAGCAGCACCCGCCGCTTCACAAGCTCCAGCACC
AGCACCAAAACCAGCACCGGCAGCAAAAGCAGTCATCACGGAAGAGAGAG
ATGACGGAGATGGGAATGGAGGGGGAAGAGGAGGAGGAAGGGGGGGAGGG
AGAGGGGGAGCAGACACCCCTACCTTCCCCTGTGACAGCGAGCAAACAAG
AGCAGCGAGAGCGAGGCGTGCTCTGGGGAATGAGGAAAGAGAGTGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGATGAAGGGGAGAAGGA
AGGGGTGTTGTCCGCGTTGGTGCTGGCGAGGCGGCGAAGGGAGAGACTGG
CGTCTGAGAGGGCGAATAGCTTTGGCACGTATTTGGAAGCATATGACAGT
AGCAGCAAAGTCAAGGGCCACAGTGCTGGAAGAGAAGGACGAGGGGGGGG
GAGGGGAGGAGGACGAGGAATAGGAACAGGCTTTCCGTCCGCGTTGGTCC
GGGCAGCAGGAGGAGGAGGAGGACGAGGAGAGAGAGGGAGGGGGGGTCGC
GCCTCCTTTGTCTCATCCCTCCTCCTCCTCGCCGGCAGGCACAGCCCTCT
GCCTGCCCCTGGCCGTGCGTCGCACAGTGTGGGAAGAGAACATGACGTTC
TTTCAGGACAAGCATCGTTTCGATCCTCACTACGCCCGCTTTGTCTGGCA
GCTCCTCGGTGCCCTCTCCTCCCTCCCTCCCTCGTCCTCCTCCTCCACGG
CAGCAGCTGCTCATTTGAGGGCGTACGGCGCGGGCCTTCGCTTCGTTTTG
GAGGTGTTAATACATGGTCGTGCCTCCTCCTGCCTCCCTCTCTGGTTTCA
AACCCTTCATTCCCTCCTCCTCCAACCCGACGAGGACGGGGATGA

Synonyms

Publications