jgi.p|Nanoce1779_2|627023, mRNA_1730 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|627023
Unique Name	mRNA_1730
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1491
Alignment location	scaffold_1:1344829..1346508 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	627109
Track	FilteredModels2
ProteinId	627023

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:1344829..1346508 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|627023	gene_1730	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|627023	mRNA_1730-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1730	CDS_1730	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:1344829..1346508+
coding sequence from alignment at scaffold_1:1344829..1346508+

mRNA sequence

>mRNA_1730 ID=mRNA_1730|Name=jgi.p|Nanoce1779_2|627023|organism=Nannochloropsis oceanica|type=mRNA|length=1491bp
AGGTGTGGACGGGAGCCGGAGAGCTGGAGAGCTTTGCCTTCCAAGTATCA
TCTTTCATACATCAACCATCCTCTTGACGTAGCCTCCTCCGCGTCCTCCT
GGCTGGAAACATCATCAACTCAATACACCGCGGAAATAAGCCGCTAAGGA
GTATTTTGAAGTAGCCCCTTGCCTTACAACAATCGAGAGCAAGGATGGCC
GCACCACCACTTCAACCACCACCTTGGACTGATGTAGGGCCTCGTTTCCT
GGCTGCATTTCCTGACCTCGTGACAGAGCTGCTGGACCCTTCGGGATCGC
CCACGATCCCTATTACGCAATTTCAGGCTACGATTCGCGCAGCCATCCGC
GTTTTGAAACCTCTCTCTCCTTCCCTCCATGCCTTGGCACAAGCGAACGA
GAGCCTGCACGACTTTCTGACCCAAGCCTTTCCTGCCTTTGCCGAAGCTG
TGTTTCGTAAGAGGGCTCGACCAGCAGATATCCCCCTCATCCAACGATGC
CTCGTTTCGGTCTTCCGCCTCCTCGTCCTGTGCATCCCTCTGGAAATAGA
ATCACTTTCTGCCCTTCTCTTGCTCTTACTGGGAGGGGGGGAAACGAGGA
CGGTGTCCCAAGGGTTGGCACCGTATGTTCCTGTGCAGTGCCGCACCCTC
GTCCCTGGGGGGCTGTATCAGGTACACGGGAAGCCGGTGATGCGGAGCGT
GGGTGGAAAGGACATGCTTGTATGGCCCGATCAAGACGCTGAGCCCCAGG
GGGAGGCAGTAGTAGGAGTAGCAGCAGTCGGTCGGCCACTAGCCTTGAAG
GAGGAAGGGAAGGAGAGAGGGAACAAGGGATGGCGACTGGGGTTGGTCTG
CGATTTCGACGCGAGCACTGCGAAACACGCGGTACATTTCATACCCCTGC
CATCAACGGAGGATAGGAGGGAGGAGGACGAGGAGAAAGAGAAAGGGGAG
GACGAGGAGGTAGAGGAGGAAAGGGAGGTGGAGCTGTCCTCTCAGCCTAT
CATGTGGCTTCCCACCGAGAATGATCTCTGCGCCAAGACCATGGCACGCG
TCGCCTCTCCCGCTCCTTCCCTTTCCTCCTCTTCCTCCTCCTCTTCCGTA
TACGGGAGACCTGAGGGGGTGGTAGAGGATCGCTCGACGCCGTTGCTAAA
TAGCGCCGAGGACATCGGCACACGGTTGAAAGTATGGTGGGGGAAAGACA
AGATGTATTACATAGGGACGGTGACGGGCTTCGACGCGATGGCGGGCACG
CACGTGGTGTCATACGATGATGGAGACGTCAGGAAGTACGTCATGGCCAA
CAAGGAGTATTTTATCTTGCAGCAGTCTGCGCCCGCAGCGCGACGACAAG
CTGCACCGCCACCAGCAGCAGCAGCGGCAGCGGCAGTACGACAAACATCT
CTCTCATCATCAGCAGTAGCAGCAGTACCAGTAGGACCAACGGCTCCCGC
ACATCAGAACGGGAGTGCAACCCCTCCCTCCTTCCCTCCCT

protein sequence of jgi.p|Nanoce1779_2|627023

>mRNA_1730-protein ID=mRNA_1730-protein|Name=jgi.p|Nanoce1779_2|627023|organism=Nannochloropsis oceanica|type=polypeptide|length=432bp
MAAPPLQPPPWTDVGPRFLAAFPDLVTELLDPSGSPTIPITQFQATIRAA
IRVLKPLSPSLHALAQANESLHDFLTQAFPAFAEAVFRKRARPADIPLIQ
RCLVSVFRLLVLCIPLEIESLSALLLLLLGGGETRTVSQGLAPYVPVQCR
TLVPGGLYQVHGKPVMRSVGGKDMLVWPDQDAEPQGEAVVGVAAVGRPLA
LKEEGKERGNKGWRLGLVCDFDASTAKHAVHFIPLPSTEDRREEDEEKEK
GEDEEVEEEREVELSSQPIMWLPTENDLCAKTMARVASPAPSLSSSSSSS
SVYGRPEGVVEDRSTPLLNSAEDIGTRLKVWWGKDKMYYIGTVTGFDAMA
GTHVVSYDDGDVRKYVMANKEYFILQQSAPAARRQAAPPPAAAAAAAVRQ
TSLSSSAVAAVPVGPTAPAHQNGSATPPSFPP

mRNA from alignment at scaffold_1:1344829..1346508+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1730 ID=mRNA_1730|Name=jgi.p|Nanoce1779_2|627023|organism=Nannochloropsis oceanica|type=mRNA|length=1680bp|location=Sequence derived from alignment at scaffold_1:1344829..1346508+ (Nannochloropsis oceanica)
AGGTGTGGACGGGAGCCGGAGAGCTGGAGAGCTTTGCCTTCCAAGTATCA
TCTTTCATACATCAACCATCCTCTTGACGTAGCCTCCTCCGCGTCCTCCT
GGCTGGAAACATCATCAACTCAATACACCGCGGAAATAAGCCGCTAAGGA
GTATTTTGAAGTAGCCCCTTGCCTTACAACAATCGAGAGCAAGGATGGCC
GCACCACCACTTCAACCACCACCTTGGACTGATGTAGGGCCTCGTTTCCT
GGCTGCATTTCCTGACCTCGTGACAGAGCTGCTGGACCCTTCGGGATCGC
CCACGATCCCTATTACGCAATTTCAGGCTACGATTCGCGCAGCCATCCGC
GTTTTGAAACCTCTCTCTCCTTCCCTCCATGCCTTGGCACAAGCGAACGA
GAGCCTGCACGACTTTCTGACCCAAGCCTTTCCTGCCTTTGCCGAAGCTG
TGTTTCGTAAGAGGGCTCGACCAGCAGATATCCCCCTCATCCAACGATGC
CTCGTTTCGGTCTTCCGCCTCCTCGTCCTGTGCATCCCTCTGGAAATAGA
ATCACTTTCTGCCCTTCTCTTGCTCTTACTGGGAGGGGGGGAAACGAGGA
CGGTGTCCCAAGGGTTGGCACCGTATGTTCCTGTGCAGTGCCGCACCCTC
GTCCCTGGGGGGCTGTATCAGGTACACGGGAAGCCGGTGATGCGGAGGTA
AGGAAACGCGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAAATAAGGAT
GGGGTCTGGGCTTGGTGTTGGGAGCCTTACCCTTTTCACTACACATGCAC
ACCTTCCCGCTCTACCTATACATATTACCACACTACACATGCACACCTTC
CCGCTCTACCTATACATATTACCACACAACTTACAGCGTGGGTGGAAAGG
ACATGCTTGTATGGCCCGATCAAGACGCTGAGCCCCAGGGGGAGGCAGTA
GTAGGAGTAGCAGCAGTCGGTCGGCCACTAGCCTTGAAGGAGGAAGGGAA
GGAGAGAGGGAACAAGGGATGGCGACTGGGGTTGGTCTGCGATTTCGACG
CGAGCACTGCGAAACACGCGGTACATTTCATACCCCTGCCATCAACGGAG
GATAGGAGGGAGGAGGACGAGGAGAAAGAGAAAGGGGAGGACGAGGAGGT
AGAGGAGGAAAGGGAGGTGGAGCTGTCCTCTCAGCCTATCATGTGGCTTC
CCACCGAGAATGATCTCTGCGCCAAGACCATGGCACGCGTCGCCTCTCCC
GCTCCTTCCCTTTCCTCCTCTTCCTCCTCCTCTTCCGTATACGGGAGACC
TGAGGGGGTGGTAGAGGATCGCTCGACGCCGTTGCTAAATAGCGCCGAGG
ACATCGGCACACGGTTGAAAGTATGGTGGGGGAAAGACAAGATGTATTAC
ATAGGGACGGTGACGGGCTTCGACGCGATGGCGGGCACGCACGTGGTGTC
ATACGATGATGGAGACGTCAGGAAGTACGTCATGGCCAACAAGGAGTATT
TTATCTTGCAGCAGTCTGCGCCCGCAGCGCGACGACAAGCTGCACCGCCA
CCAGCAGCAGCAGCGGCAGCGGCAGTACGACAAACATCTCTCTCATCATC
AGCAGTAGCAGCAGTACCAGTAGGACCAACGGCTCCCGCACATCAGAACG
GGAGTGCAACCCCTCCCTCCTTCCCTCCCT

Coding sequence (CDS) from alignment at scaffold_1:1344829..1346508+

>mRNA_1730 ID=mRNA_1730|Name=jgi.p|Nanoce1779_2|627023|organism=Nannochloropsis oceanica|type=CDS|length=2592bp|location=Sequence derived from alignment at scaffold_1:1344829..1346508+ (Nannochloropsis oceanica)
ATGGCCGCACCACCACTTCAACCACCACCTTGGACTGATGTAGGGCCTCG
TTTCCTGGCTGCATTTCCTGACCTCGTGACAGAGCTGCTGGACCCTTCGG
GATCGCCCACGATCCCTATTACGCAATTTCAGGCTACGATTCGCGCAGCC
ATCCGCGTTTTGAAACCTCTCTCTCCTTCCCTCCATGCCTTGGCACAAGC
GAACGAGAGCCTGCACGACTTTCTGACCCAAGCCTTTCCTGCCTTTGCCG
AAGCTGTGTTTCGTAAGAGGGCTCGACCAGCAGATATCCCCCTCATCCAA
CGATGCCTCGTTTCGGTCTTCCGCCTCCTCGTCCTGTGCATCCCTCTGGA
AATAGAATCACTTTCTGCCCTTCTCTTGCTCTTACTGGGAGGGGGGGAAA
CGAGGACGGTGTCCCAAGGGTTGGCACCGTATGTTCCTGTGCAGTGCCGC
ACCCTCGTCCCTGGGGGGCTGTATCAGGTACACGGGAAGCCGGTGATGCG
GAGCGTGGGTGGAAAGGACATGCTTGTATGGCCCGATCAAGACGCTGAGC
CCCAGGGGGAGGCAGTAGTAGGAGTAGCAGCAGTCGGTCGGCCACTAGCC
TTGAAGGAGGAAGGGAAGGAGAGAGGGAACAAGGGATGGCGACTGGGGTT
GGTCTGCGATTTCGACGCGAGCACTGCGAAACACGCGGTACATTTCATAC
CCCTGCCATCAACGGAGGATAGGAGGGAGGAGGACGAGGAGAAAGAGAAA
GGGGAGGACGAGGAGGTAGAGGAGGAAAGGGAGGTGGAGCTGTCCTCTCA
GCCTATCATGTGGCTTCCCACCGAGAATGATCTCTGCGCCAAGACCATGG
CACGCGTCGCCTCTCCCGCTCCTTCCCTTTCCTCCTCTTCCTCCTCCTCT
TCCGTATACGGGAGACCTGAGGGGGTGGTAGAGGATCGCTCGACGCCGTT
GCTAAATAGCGCCGAGGACATCGGCACACGGTTGAAAGTATGGTGGGGGA
AAGACAAGATGTATTACATAGGGACGGTGACGGGCTTCGACGCGATGGCG
GGCACGCACGTGGTGTCATACGATGATGGAGACGTCAGGAAGTACGTCAT
GGCCAACAAGGAGTATTTTATCTTGCAGCAGTCTGCGCCCGCAGCGCGAC
GACAAGCTGCACCGCCACCAGCAGCAGCAGCGGCAGCGGCAGTACGACAA
ACATCTCTCTCATCATCAGCAGTAGCAGCAGTACCAGTAGGACCAACGGC
TCCCGCACATCAGAACGGGAGTGCAACCCCTCCCTCCTTCCCTCCCATGG
CCGCACCACCACTTCAACCACCACCTTGGACTGATGTAGGGCCTCGTTTC
CTGGCTGCATTTCCTGACCTCGTGACAGAGCTGCTGGACCCTTCGGGATC
GCCCACGATCCCTATTACGCAATTTCAGGCTACGATTCGCGCAGCCATCC
GCGTTTTGAAACCTCTCTCTCCTTCCCTCCATGCCTTGGCACAAGCGAAC
GAGAGCCTGCACGACTTTCTGACCCAAGCCTTTCCTGCCTTTGCCGAAGC
TGTGTTTCGTAAGAGGGCTCGACCAGCAGATATCCCCCTCATCCAACGAT
GCCTCGTTTCGGTCTTCCGCCTCCTCGTCCTGTGCATCCCTCTGGAAATA
GAATCACTTTCTGCCCTTCTCTTGCTCTTACTGGGAGGGGGGGAAACGAG
GACGGTGTCCCAAGGGTTGGCACCGTATGTTCCTGTGCAGTGCCGCACCC
TCGTCCCTGGGGGGCTGTATCAGGTACACGGGAAGCCGGTGATGCGGAGC
GTGGGTGGAAAGGACATGCTTGTATGGCCCGATCAAGACGCTGAGCCCCA
GGGGGAGGCAGTAGTAGGAGTAGCAGCAGTCGGTCGGCCACTAGCCTTGA
AGGAGGAAGGGAAGGAGAGAGGGAACAAGGGATGGCGACTGGGGTTGGTC
TGCGATTTCGACGCGAGCACTGCGAAACACGCGGTACATTTCATACCCCT
GCCATCAACGGAGGATAGGAGGGAGGAGGACGAGGAGAAAGAGAAAGGGG
AGGACGAGGAGGTAGAGGAGGAAAGGGAGGTGGAGCTGTCCTCTCAGCCT
ATCATGTGGCTTCCCACCGAGAATGATCTCTGCGCCAAGACCATGGCACG
CGTCGCCTCTCCCGCTCCTTCCCTTTCCTCCTCTTCCTCCTCCTCTTCCG
TATACGGGAGACCTGAGGGGGTGGTAGAGGATCGCTCGACGCCGTTGCTA
AATAGCGCCGAGGACATCGGCACACGGTTGAAAGTATGGTGGGGGAAAGA
CAAGATGTATTACATAGGGACGGTGACGGGCTTCGACGCGATGGCGGGCA
CGCACGTGGTGTCATACGATGATGGAGACGTCAGGAAGTACGTCATGGCC
AACAAGGAGTATTTTATCTTGCAGCAGTCTGCGCCCGCAGCGCGACGACA
AGCTGCACCGCCACCAGCAGCAGCAGCGGCAGCGGCAGTACGACAAACAT
CTCTCTCATCATCAGCAGTAGCAGCAGTACCAGTAGGACCAACGGCTCCC
GCACATCAGAACGGGAGTGCAACCCCTCCCTCCTTCCCTCCC

Synonyms

Publications