jgi.p|Nanoce1779_2|231636, mRNA_173 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|231636
Unique NamemRNA_173
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1407
Alignment locationscaffold_3:437146..439269 -

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Properties
Property NameValue
TranscriptId231722
TrackFilteredModels2
ProteinId231636
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:437146..439269 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|231636gene_173Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|231636mRNA_173-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_173CDS_173Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_173 ID=mRNA_173|Name=jgi.p|Nanoce1779_2|231636|organism=Nannochloropsis oceanica|type=mRNA|length=1407bp
CACACCACTGCATGGGCATTGATCTCTTTGGTATGGAATCATTGTGGCGT
GCAGGCTTTAGGACTCGCAGCTGGACCGTCAGACGCCTCGCTCCAATCGT
TCAAGCCTCCGCCGCGCTCTTCTGTTAGGGTTACGAGACGTGCGCACCTC
ATCTGATCTCCGGAGTATTAAAACCAAGCAGTTTCCCTCCACGACCTACA
AAGATGTTGGACATGACCACTGTGTTCGCCATGGTGGGCAATGTCGGCTC
AGTTGTCGGCGTGGTTATCATGAACAAATACATCGTCTCGATCGACGCCT
TCAACTTTATGGTCTTTCTCTCCTTCACCCACTTTGTCTTCACCTACTTC
GGGTGTTGCGTCCTCCTCAAATTCCGGTTCTTTACTTACAAACCGGCTCC
GCTCCGGGGTGTCCTCCCCGTGGCCCTTGGCTCGTTGGGCAGTGTGGCAT
TTATGAATCTGAATCTCGCGCATAACTCTGTCGGGTTTTATCAGTTGTCG
AAGCTAGCCTGTATCCCGGTGACCATTTTTCTGGAACGGGTGTTCTACGG
TAAGACCGTGCCAGGACCTATTCTTTTGACGCTGATCCCCATCACGATTG
GAGTGGGCATTGCCACTGTGAATGATGTGACTGTTAACTTTGTCGGGACG
GTCTTCGCGGGTTTCGCCGTGCTTTTTACTTCCTTGGCGCAAATTTTCAC
GTCAACGTACCAGAAGCAACTGGATTGCGATGCCTTGCAACTGCTCTATC
ATTCCTCGCCGCTCATCGCGGGGGGTATGTTTTGCATGATCCCTTTTTTC
GACAACGTCAGGTATCTCGTTAAAACAGAGTTTTCCATCCCTCTGGTGAA
TCATGTGCTGTCCTCGTGCGTGCTTGCTCTCGGTGTGAACATCTCGAATT
ATCTCGTGCTGGGGAAGACGTCCCCTCTAACCTACCAGGTGCTGGGGCAC
TTGAAGACGATTTTGATTCTAGTGTTAGGCTTTGTGGTGTTCCATTATGA
ATCCAATTTGAGGGCGGTGATTGGGATTGTGGTTGCTCTTGGGGGAGTGA
TCGCCTACACCGAGTTAAAGCGACAGGTGTCGTCGCAGGGGCTTGTGACG
GTTGTGAATGGCAGCAGCAGCAGTAGCAGCAGGGGAGGGATGCAGTATTC
CAAGCTGGAGACACATGAGGACATGATCCCTGATGGTGAGGTAGGGGAGG
CGAGGATGCTTGAGATGTTGTCAGGGCCGATGAAGGTCTAAGAGGAAGGA
GGGAAGGAGGAAGGAGGGAGGGGCAAATATGGTGACGGGGGTAGGGGTAC
AAATCAAGCTGGAAACGCAGGAAGTGATGATGGGGTGTGGAGGCATTAAA
GCAGGTATGTATTGTCGGGGCCAATCAAGGTCTCGAAGACGCAGATAAGC
AGCAGTA
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protein sequence of jgi.p|Nanoce1779_2|231636

>mRNA_173-protein ID=mRNA_173-protein|Name=jgi.p|Nanoce1779_2|231636|organism=Nannochloropsis oceanica|type=polypeptide|length=346bp
MLDMTTVFAMVGNVGSVVGVVIMNKYIVSIDAFNFMVFLSFTHFVFTYFG
CCVLLKFRFFTYKPAPLRGVLPVALGSLGSVAFMNLNLAHNSVGFYQLSK
LACIPVTIFLERVFYGKTVPGPILLTLIPITIGVGIATVNDVTVNFVGTV
FAGFAVLFTSLAQIFTSTYQKQLDCDALQLLYHSSPLIAGGMFCMIPFFD
NVRYLVKTEFSIPLVNHVLSSCVLALGVNISNYLVLGKTSPLTYQVLGHL
KTILILVLGFVVFHYESNLRAVIGIVVALGGVIAYTELKRQVSSQGLVTV
VNGSSSSSSRGGMQYSKLETHEDMIPDGEVGEARMLEMLSGPMKV*
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mRNA from alignment at scaffold_3:437146..439269-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_173 ID=mRNA_173|Name=jgi.p|Nanoce1779_2|231636|organism=Nannochloropsis oceanica|type=mRNA|length=2124bp|location=Sequence derived from alignment at scaffold_3:437146..439269- (Nannochloropsis oceanica)
CACACCACTGCATGGGCATTGATCTCTTTGGTATGGAATCATTGTGGCGT
GCAGGTGTGGATGATCAAAGCTCGGACCGACACATCGGCCGGGTTTTAAA
TCTCTCTTTCCTGGTCACCTGGCCCAGCACATGTACAAATACCCATCGCC
ACACCCCTCACACGGACATAGGCTTTAGGACTCGCAGCTGGACCGTCAGA
CGCCTCGCTCCAATCGTTCAAGCCTCCGCCGCGCTCTTCTGTTAGGGTTA
CGAGACGTGCGCACCTCATCTGATCTCCGGAGTATTAAAACCAAGCAGTT
TCCCTCCACGACCTACAAAGGTAAGGTGTGAGTGCTGTGCTGGTGCGACA
TGGGCGAAAGGATGACATGATGCAAGGGCTAGCACTCGAAATTGGATAGG
CCCATGCCCACACACTCAGCGCGCAGCGGGCGGCGTTCGATGATGATCGT
AGACCGTGCTTACTTGCCCTCCGGCAATTTGGCTTTTGCCTGCTCCCTGT
ATACCACAACGCAGATCTCACCAGCCCTTTTTGTGTTTTTTCCTTCTTGC
GCGGCCGAGTCCGCGGTGAAAGACGTTTTCCTTCCTCCACGCTCTGTGCC
CTCTCACGCAGACAAAACCATTCAGGTCCTCCCTCCCCTCCCTTTCTCCC
CTCCTCCCCTTGGCGCAGATGTTGGACATGACCACTGTGTTCGCCATGGT
GGGCAATGTCGGCTCAGTTGTCGGCGTGGTTATCATGAACAAATACATCG
TCTCGATCGACGCCTTCAACTTTATGGTCTTTCTCTCCTTCACCCACTTT
GTCTTCACCTACTTCGGGTGTTGCGTCCTCCTCAAATTCCGGTTCTTTAC
TTACAAACCGGCTCCGCTCCGGGGTGTCCTCCCCGTGGCCCTTGGCTCGT
TGGGCAGTGTGGCATTTATGAATCTGAATCTCGCGCATAACTCTGTCGGG
TTTTATCAGTTGTCGAAGCTAGCCTGTATCCCGGTGACCATTTTTCTGGA
ACGGGTGTTCTACGGTAAGACCGTGCCAGGACCTATTCTTTTGACGCTGA
TCCCCATCACGATTGGAGTGGGCATTGCCACTGTGAATGATGTGACTGTT
AACTTTGTCGGGACGGTCTTCGCGGGTTTCGCCGTGCTTTTTACTTCCTT
GGCGCAAATTTTCACGTCAACGTACCAGAAGCAACTGGATTGCGATGCCT
TGCAACTGCTCTATCATTCCTCGCCGCTCATCGCGGGGGGTATGTTTTGC
ATGATCCCTTTTTTCGACAACGTCAGGTATCTCGTTAAAACAGAGTTTTC
CATCCCTCTGGTGAATCATGTGCTGTCCTCGTGCGTGCTTGCTCTCGGTG
TGAACATCTCGAATTATCTCGTGCTGGGGAAGACGTCCCCTCTAACCTAC
CAGGTGCTGGGGCACTTGAAGACGATTTTGATTCTAGTGTTAGGCTTTGT
GGTGTTCCATTATGAATCCAATTTGAGGGCGGTGATTGGGATTGTGGTTG
CTCTTGGGGGAGTGATCGCCTACACCGAGTTAAAGCGACAGGTGTCGTCG
CAGGGGCTTGTGACGGTTGTGAATGGCAGCAGCAGCAGTAGCAGCAGGGG
AGGGATGCAGTATTCCAAGCTGGAGACACATGAGGACATGATCCCTGATG
GTGAGGTAGGGGAGGCGAGGATGCTTGAGATGTTGTCAGGGCCGATGAAG
GTCTAAGAGGAAGGAGGGAAGGAGGAAGGAGGGAGGGGCAAATATGGTGA
CGGGGGTAGGGGTACAAATCAAGCTGGAAACGCAGGAAGTGATGATGGGG
TGTGGAGGCATTAAAGCAGGTATGTATTGTCGGGGCCAATCAAGGTCTCG
AAGACGCAGCAGCAGCGGCAGTAGCAGCAGTTATAGTGGTGTTCGTGGTA
GTGGGAAGGAAGTAAATATGATGCGACGGTTGAATAAAAATGTGACCAGT
GTGAGTGAGGGAAGGTGGGACGGAGTGGTAGAATGGAGAATCGAAACGAG
AATGGCAGATACAGATAGGCACAGAGACAGGCACAGAGAGAGAAAGCATG
AAAAAAGAACCCTTTAACCGTCATTACTTAAGAGCCTCAAGAATGCTTCC
AGCGAAGCAGGATAAGCAGCAGTA
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Coding sequence (CDS) from alignment at scaffold_3:437146..439269-

>mRNA_173 ID=mRNA_173|Name=jgi.p|Nanoce1779_2|231636|organism=Nannochloropsis oceanica|type=CDS|length=1038bp|location=Sequence derived from alignment at scaffold_3:437146..439269- (Nannochloropsis oceanica)
ATGTTGGACATGACCACTGTGTTCGCCATGGTGGGCAATGTCGGCTCAGT
TGTCGGCGTGGTTATCATGAACAAATACATCGTCTCGATCGACGCCTTCA
ACTTTATGGTCTTTCTCTCCTTCACCCACTTTGTCTTCACCTACTTCGGG
TGTTGCGTCCTCCTCAAATTCCGGTTCTTTACTTACAAACCGGCTCCGCT
CCGGGGTGTCCTCCCCGTGGCCCTTGGCTCGTTGGGCAGTGTGGCATTTA
TGAATCTGAATCTCGCGCATAACTCTGTCGGGTTTTATCAGTTGTCGAAG
CTAGCCTGTATCCCGGTGACCATTTTTCTGGAACGGGTGTTCTACGGTAA
GACCGTGCCAGGACCTATTCTTTTGACGCTGATCCCCATCACGATTGGAG
TGGGCATTGCCACTGTGAATGATGTGACTGTTAACTTTGTCGGGACGGTC
TTCGCGGGTTTCGCCGTGCTTTTTACTTCCTTGGCGCAAATTTTCACGTC
AACGTACCAGAAGCAACTGGATTGCGATGCCTTGCAACTGCTCTATCATT
CCTCGCCGCTCATCGCGGGGGGTATGTTTTGCATGATCCCTTTTTTCGAC
AACGTCAGGTATCTCGTTAAAACAGAGTTTTCCATCCCTCTGGTGAATCA
TGTGCTGTCCTCGTGCGTGCTTGCTCTCGGTGTGAACATCTCGAATTATC
TCGTGCTGGGGAAGACGTCCCCTCTAACCTACCAGGTGCTGGGGCACTTG
AAGACGATTTTGATTCTAGTGTTAGGCTTTGTGGTGTTCCATTATGAATC
CAATTTGAGGGCGGTGATTGGGATTGTGGTTGCTCTTGGGGGAGTGATCG
CCTACACCGAGTTAAAGCGACAGGTGTCGTCGCAGGGGCTTGTGACGGTT
GTGAATGGCAGCAGCAGCAGTAGCAGCAGGGGAGGGATGCAGTATTCCAA
GCTGGAGACACATGAGGACATGATCCCTGATGGTGAGGTAGGGGAGGCGA
GGATGCTTGAGATGTTGTCAGGGCCGATGAAGGTCTAA
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Synonyms
Publications