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Properties
| Property Name | Value |
|---|
| TranscriptId | 573334 |
| Track | FilteredModels2 |
| ProteinId | 573248 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_1 | supercontig | scaffold_1:1339228..1340711 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_1728 ID=mRNA_1728|Name=jgi.p|Nanoce1779_2|573248|organism=Nannochloropsis oceanica|type=mRNA|length=1175bp
CCGTCATCATATGGCCTGACTTTTCGGTGCTTAAACACAGCCAACTTCAA
CCCTCCCTCCCTCTCTCCCTCCCCTCCTCGCCGCAGCTTATCCCTCAAGT
CCTCGATGCGATCCACCTCCTGTAAGCCCACCACATCGGCCTGCATGCTC
TCGATCTCCTTGACAATACTCTTGCTCCTCACCTCCCACTCCATCTCATG
CTGGTAATCCAATAACCTCCCCAAGTCCGACTCGTTCAGACTCAGAAACG
TCCCTATTTCCAAAGCAACTTCCTGAAACTCCTCCTCTATCCTCGCTTCC
GACAGCTCAAAATGTTCCAGTGCTCCCTTGTGGTGCGTGTGCCTTCGCCG
ACATACCAACGTCCGTCGCAGCCACGCATTGAATCTATCCACAGCCTTCC
GACACTCCACCGGATCATAACACTTGGTTTTAATCCCCTGTCGGAGTGCC
TCGGCCTCCTTCCATTCCTCCTCTGTAAATGTGTACCCCAGTGGGTGCAA
CAATCCCCTCTCCCAAATCTTATAATCGTTACTGTTTCGGTCAAACAGAT
GGTAAGCCAAGTGCTTGTTCCCGTGTGCATGATTCGTCGTATTCCGATGA
AAGAAGTCAAATGTCGCAGACTCCAACAAACCCTTCAACGCCACCGCAGG
CCCTTCAGGGTGCGCACTCTCCGGTCGTCCCGTTTGGGCGAGTGCATCAA
TTCGATATGGGTAAGATGGCTCTCGATCGAAGAGATGGAGATAAGTCTTG
GCCACGCACCACAGGTCGATAAAGAGCTTGCTGCGTCCGACACCAAAGGT
TTGGAGGCGTGCCTCATCAAATGCGTCACCTGTATAGTGAGGTACAGTGG
GTTGCACGCCACGGAAACCGTACCAAAACCATGGCTTGAGATTGTTGGCC
AGATCGGCGGCTAGCACGTTATACTGAGAAACGTGCAGTGTGAAGGAGAA
ACTCTTCGCAGCAGAAGCCAACAGAGGCAGGGCCAACATCGAGATCTCAT
GTGATCAGCATCCATTCTTTCTAGACCGTGGCATGCCACTCGGGGGCTCG
TGCTCTCATCATGCTGCTGCTGTCCTCCCTCGCCATGTCGCTGCTTTTCG
TGTTTTTGGCGACAGGCATTTTCCTGGTTGTACTGCTTCGGTTGCAGCAG
GGTTGTTGCATGTCAGCGATCCTGT back to topprotein sequence of jgi.p|Nanoce1779_2|573248 >mRNA_1728-protein ID=mRNA_1728-protein|Name=jgi.p|Nanoce1779_2|573248|organism=Nannochloropsis oceanica|type=polypeptide|length=201bp
MFQCSLVVRVPSPTYQRPSQPRIESIHSLPTLHRIITLGFNPLSECLGLL
PFLLCKCVPQWVQQSPLPNLIIVTVSVKQMVSQVLVPVCMIRRIPMKEVK
CRRLQQTLQRHRRPFRVRTLRSSRLGECINSIWVRWLSIEEMEISLGHAP
QVDKELAASDTKGLEACLIKCVTCIVRYSGLHATETVPKPWLEIVGQIGG
* back to topmRNA from alignment at scaffold_1:1339228..1340711+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_1728 ID=mRNA_1728|Name=jgi.p|Nanoce1779_2|573248|organism=Nannochloropsis oceanica|type=mRNA|length=1484bp|location=Sequence derived from alignment at scaffold_1:1339228..1340711+ (Nannochloropsis oceanica)
CCGTCATCATATGGCCTGACTTTTCGGTGCTTAAACACAGCCAACTTCAA
CCCTCCCTCCCTCTCTCCCTCCCCTCCTCGCCGCAGCTTATCCCTCAAGT
CCTCGATGCGATCCACCTCCTGTAAGCCCACCACATCGGCCTGCATGCTC
TCGATCTCCTTGACAATACTCTTGCTCCTCACCTCCCACTCCATCTCATG
CTGGTAATCCAATAACCTCCCCAAGTCCGACTCGTTCAGACTCAGAAACG
TCCCTATTTCCAAAGCAACTTCCTGAAACTCCTCCTCTATCCTCGCTTCC
GACAGCTCAAAATGTTCCAGTGCTCCCTTGTGGTGCGTGTGCCTTCGCCG
ACATACCAACGTCCGTCGCAGCCACGCATTGAATCTATCCACAGCCTTCC
GACACTCCACCGGATCATAACACTTGGTTTTAATCCCCTGTCGGAGTGCC
TCGGCCTCCTTCCATTCCTCCTCTGTAAATGTGTACCCCAGTGGGTGCAA
CAATCCCCTCTCCCAAATCTTATAATCGTTACTGTTTCGGTCAAACAGAT
GGTAAGCCAAGTGCTTGTTCCCGTGTGCATGATTCGTCGTATTCCGATGA
AAGAAGTCAAATGTCGCAGACTCCAACAAACCCTTCAACGCCACCGCAGG
CCCTTCAGGGTGCGCACTCTCCGGTCGTCCCGTTTGGGCGAGTGCATCAA
TTCGATATGGGTAAGATGGCTCTCGATCGAAGAGATGGAGATAAGTCTTG
GCCACGCACCACAGGTCGATAAAGAGCTTGCTGCGTCCGACACCAAAGGT
TTGGAGGCGTGCCTCATCAAATGCGTCACCTGTATAGTGAGGTACAGTGG
GTTGCACGCCACGGAAACCGTACCAAAACCATGGCTTTTTTGGTGTGGGA
AGAGGGGGAAGGGGGAAGGGGGAAGGAAGGAGGGCAGGGAGCAGTCGGGT
GAGTGGAAGGGGACAGGCTTCTTTCTCTCATCACAAGGCATTGACGCATG
AAGCAAAGTGGATGATTTTGCAACGGTATGCTGCTACAATACTCGTCCCG
CTAAAGCAGCGGGGTTATTCCCTCTTAATTGCCTCACCCCCGGCTTCACA
TTACCTTGAGATTGTTGGCCAGATCGGCGGCTAGCACGTTATACTGAGAA
ACGTGCAGTGTGAAGGAGAAACTCTTCGCAGCAGAAGCCAACAGAGGCAG
GGCCAACATCGAGATCTCTGGTGGTAAGAAAAAGGACGGGGGATAAATAC
ATGAGTATACGAGGGCCCCCCGTCACAGGGCACAAGGCCACAAGCACACT
ACACACCATGTGATCAGCATCCATTCTTTCTAGACCGTGGCATGCCACTC
GGGGGCTCGTGCTCTCATCATGCTGCTGCTGTCCTCCCTCGCCATGTCGC
TGCTTTTCGTGTTTTTGGCGACAGGCATTTTCCTGGTTGTACTGCTTCGG
TTGCAGCAGGGTTGTTGCATGTCAGCGATCCTGT back to topCoding sequence (CDS) from alignment at scaffold_1:1339228..1340711+ >mRNA_1728 ID=mRNA_1728|Name=jgi.p|Nanoce1779_2|573248|organism=Nannochloropsis oceanica|type=CDS|length=1206bp|location=Sequence derived from alignment at scaffold_1:1339228..1340711+ (Nannochloropsis oceanica)
ATGTTCCAGTGCTCCCTTGTGGTGCGTGTGCCTTCGCCGACATACCAACG
TCCGTCGCAGCCACGCATTGAATCTATCCACAGCCTTCCGACACTCCACC
GGATCATAACACTTGGTTTTAATCCCCTGTCGGAGTGCCTCGGCCTCCTT
CCATTCCTCCTCTGTAAATGTGTACCCCAGTGGGTGCAACAATCCCCTCT
CCCAAATCTTATAATCGTTACTGTTTCGGTCAAACAGATGGTAAGCCAAG
TGCTTGTTCCCGTGTGCATGATTCGTCGTATTCCGATGAAAGAAGTCAAA
TGTCGCAGACTCCAACAAACCCTTCAACGCCACCGCAGGCCCTTCAGGGT
GCGCACTCTCCGGTCGTCCCGTTTGGGCGAGTGCATCAATTCGATATGGG
TAAGATGGCTCTCGATCGAAGAGATGGAGATAAGTCTTGGCCACGCACCA
CAGGTCGATAAAGAGCTTGCTGCGTCCGACACCAAAGGTTTGGAGGCGTG
CCTCATCAAATGCGTCACCTGTATAGTGAGGTACAGTGGGTTGCACGCCA
CGGAAACCGTACCAAAACCATGGCTTGAGATTGTTGGCCAGATCGGCGGC
TAGATGTTCCAGTGCTCCCTTGTGGTGCGTGTGCCTTCGCCGACATACCA
ACGTCCGTCGCAGCCACGCATTGAATCTATCCACAGCCTTCCGACACTCC
ACCGGATCATAACACTTGGTTTTAATCCCCTGTCGGAGTGCCTCGGCCTC
CTTCCATTCCTCCTCTGTAAATGTGTACCCCAGTGGGTGCAACAATCCCC
TCTCCCAAATCTTATAATCGTTACTGTTTCGGTCAAACAGATGGTAAGCC
AAGTGCTTGTTCCCGTGTGCATGATTCGTCGTATTCCGATGAAAGAAGTC
AAATGTCGCAGACTCCAACAAACCCTTCAACGCCACCGCAGGCCCTTCAG
GGTGCGCACTCTCCGGTCGTCCCGTTTGGGCGAGTGCATCAATTCGATAT
GGGTAAGATGGCTCTCGATCGAAGAGATGGAGATAAGTCTTGGCCACGCA
CCACAGGTCGATAAAGAGCTTGCTGCGTCCGACACCAAAGGTTTGGAGGC
GTGCCTCATCAAATGCGTCACCTGTATAGTGAGGTACAGTGGGTTGCACG
CCACGGAAACCGTACCAAAACCATGGCTTGAGATTGTTGGCCAGATCGGC
GGCTAG back to top
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