jgi.p|Nanoce1779_2|622257, mRNA_1725 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|622257
Unique NamemRNA_1725
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1335
Alignment locationscaffold_1:1334494..1336035 -

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Properties
Property NameValue
TranscriptId622343
TrackFilteredModels2
ProteinId622257
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:1334494..1336035 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|622257gene_1725Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|622257mRNA_1725-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1725CDS_1725Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1725 ID=mRNA_1725|Name=jgi.p|Nanoce1779_2|622257|organism=Nannochloropsis oceanica|type=mRNA|length=1335bp
ATGGTAGCGGCGGAGGAGGAGGAGGCGTATGTGCGTGATGCTGCCCTAGG
AGTGCTGATGGGCACCTTTCCACACGCGTCGCCCGATGCCCTTCTCGTCG
CTCTCTTGCGTTGCGACGTCGATTTGGAAGAAGCAGTGCGGAGGGTGGAC
GCGGCATTAAAACCCCGGGTGCCCGCATGCCGTTACTTTGTGTCTGGCTT
TTGTGCCCGGGCCGACTGTGCCTTCAGCCATGCCCTGGATACGATGACGT
GCATTCACTGGTTACTTGGGTCCTGTCGGGACGGGATGATGGACGAGGAA
AGCAAGACGCTGCACAGGTGCCCTTTCTGGCATGACATCCGTGCCGTGGA
CCGGGAGGACGGTAATCCTTCCGAGACCTCTTCCTCCTCCTCGTCCTCCT
CCTCCACCTCCTCCTCCTCTTCTTCCGGCCCACTCTTCAGTGCCAAGGAC
GAAACACACTTTCCTGCCCTTTCAGCCTCGACAACCAGCAGCTCCGCCAC
GACGTCTGCGGCGTCCTCGTCCTCGTCCTCGTCCTCGTCCTCGTCCTCGT
CCTCGCCCTCCACCACGGCCAGCACTCCGGGCAAGTCTTTCCTACAAGTC
GCCCTGGCCTCGAAACGCACCTCCATCCCTGGGAGAAACCCTTTCCCTTC
CTCCCTCCCTTCCTCTTCTTCCTCCAAGAACAGCTGCAGGAGCAGGAGCA
GGAGTAGGAGCAGCAGAAGGAGGTTGGAATCTCTGTGGGTCATGGGGGGG
GAGGAGGTGAGAAAGACATACCAGCAGGCGCGAGCGGAGGCGACCCACGC
AGCAAAGGCTCGGAACCAATACTTCATGCGGGCCACTGAGGCCTTCCAGA
GGGGGGATAAGGCGGCGGCCAAATCCCTGGGGCTGGAAGGCCGGCATTGG
AACACCATCATGAAGGCCCGCCACCGTGCTGCTGCCCTCGCCATCTTTGC
CTCGCGGAATCCGTCCGAGAAAAAGATTTATGAGGAGGGTGTACTAGACC
TGCACGGGCTGCATGTGGCAGAGGCGACCGAGGCAGTGGAGGAGTTGCTG
CCAGACATTTACGCGTGTGGGAAGGCTGGGGAGGCGACATTGATCACGGG
GACAGGAAAACACTCGGGAGGGGTGAGTCATTACCAAGCAAGGCTCTTCC
CTGCGCTGGAGGCTTATTTACGAGAGCTGGAGGAGGAGGTGAAGGGGGGT
GGGAAGGGGAGGAAGGGGGAGAGGGAGAGCGAGAGGGGGTTGTTCGAGAG
GGTTGTGGACCCCCAAGGGTACGAAGGGGGCTTTAGGGTGCGGCTGTCGA
GGGAGTTGATGGAGTATTGGGGTGTAGGGAGCTAG
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protein sequence of jgi.p|Nanoce1779_2|622257

>mRNA_1725-protein ID=mRNA_1725-protein|Name=jgi.p|Nanoce1779_2|622257|organism=Nannochloropsis oceanica|type=polypeptide|length=445bp
MVAAEEEEAYVRDAALGVLMGTFPHASPDALLVALLRCDVDLEEAVRRVD
AALKPRVPACRYFVSGFCARADCAFSHALDTMTCIHWLLGSCRDGMMDEE
SKTLHRCPFWHDIRAVDREDGNPSETSSSSSSSSSTSSSSSSGPLFSAKD
ETHFPALSASTTSSSATTSAASSSSSSSSSSSSSSPSTTASTPGKSFLQV
ALASKRTSIPGRNPFPSSLPSSSSSKNSCRSRSRSRSSRRRLESLWVMGG
EEVRKTYQQARAEATHAAKARNQYFMRATEAFQRGDKAAAKSLGLEGRHW
NTIMKARHRAAALAIFASRNPSEKKIYEEGVLDLHGLHVAEATEAVEELL
PDIYACGKAGEATLITGTGKHSGGVSHYQARLFPALEAYLRELEEEVKGG
GKGRKGERESERGLFERVVDPQGYEGGFRVRLSRELMEYWGVGS*
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mRNA from alignment at scaffold_1:1334494..1336035-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1725 ID=mRNA_1725|Name=jgi.p|Nanoce1779_2|622257|organism=Nannochloropsis oceanica|type=mRNA|length=1542bp|location=Sequence derived from alignment at scaffold_1:1334494..1336035- (Nannochloropsis oceanica)
ATGGTAGCGGCGGAGGAGGAGGAGGCGTATGTGCGTGATGCTGCCCTAGG
AGTGCTGATGGGCACCTTTCCACACGCGTCGCCCGATGCCCTTCTCGTCG
CTCTCTTGCGTTGCGACGTCGATTTGGAAGAAGCAGTGCGGAGGGTGGAC
GCGGCATTAAAACCCCGGGTGCCCGCATGCCGTTACTTTGTGTCTGGCTT
TTGTGCCCGGGCCGACTGTGCCTTCAGCCATGCCCTGGATACGATGACGT
GCATTCACTGGTTACTTGGGTCCTGTCGGGACGGGATGATGGACGAGGAA
AGCAAGACGCTGCACAGGTGCCCTTTCTGGCATGACATCCGTGCCGTGGA
CCGGGAGGACGGTAATCCTTCCGAGACCTCTTCCTCCTCCTCGTCCTCCT
CCTCCACCTCCTCCTCCTCTTCTTCCGGCCCACTCTTCAGTGCCAAGGAC
GAAACACACTTTCCTGCCCTTTCAGCCTCGACAACCAGCAGCTCCGCCAC
GACGTCTGCGGCGTCCTCGTCCTCGTCCTCGTCCTCGTCCTCGTCCTCGT
CCTCGCCCTCCACCACGGCCAGCACTCCGGGCAAGTCTTTCCTACAAGTC
GCCCTGGCCTCGAAACGCACCTCCATCCCTGGGAGAAACCCTTTCCCTTC
CTCCCTCCCTTCCTCTTCTTCCTCCAAGAACAGCTGCAGGAGCAGGAGCA
GGAGTAGGAGCAGCAGAAGGAGGTTGGAATCTCTGTGGGTCATGGGGGGG
GAGGAGGTGAGAAAGACATACCAGCAGGCGCGAGCGGAGGCGACCCACGC
AGCAAAGGCTCGGAACCAATACTTCATGCGGGCCACTGAGGCCTTCCAGA
GGGGGGATAAGGCGGCGGGTACGTAATGAGCGAAGGAGGGAGGGGGAGGG
AGTGAAAGGAAGATATCTCGAGGTGCCCAGAAAGTATCACTATTTACCCC
TCCCCCTTACCTCTCCCTCCTTCCCTCTTTGGCTCCCTTTCTGTTGCCTT
CAGCAAAGCTGCTTCCATTATAGGTCACCATAAATCCTCATCTCCCTCCC
TCCCTCCCTCCCTCCCCTCCTCCAGCCAAATCCCTGGGGCTGGAAGGCCG
GCATTGGAACACCATCATGAAGGCCCGCCACCGTGCTGCTGCCCTCGCCA
TCTTTGCCTCGCGGAATCCGTCCGAGAAAAAGATTTATGAGGAGGGTGTA
CTAGACCTGCACGGGCTGCATGTGGCAGAGGCGACCGAGGCAGTGGAGGA
GTTGCTGCCAGACATTTACGCGTGTGGGAAGGCTGGGGAGGCGACATTGA
TCACGGGGACAGGAAAACACTCGGGAGGGGTGAGTCATTACCAAGCAAGG
CTCTTCCCTGCGCTGGAGGCTTATTTACGAGAGCTGGAGGAGGAGGTGAA
GGGGGGTGGGAAGGGGAGGAAGGGGGAGAGGGAGAGCGAGAGGGGGTTGT
TCGAGAGGGTTGTGGACCCCCAAGGGTACGAAGGGGGCTTTAGGGTGCGG
CTGTCGAGGGAGTTGATGGAGTATTGGGGTGTAGGGAGCTAG
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Coding sequence (CDS) from alignment at scaffold_1:1334494..1336035-

>mRNA_1725 ID=mRNA_1725|Name=jgi.p|Nanoce1779_2|622257|organism=Nannochloropsis oceanica|type=CDS|length=2670bp|location=Sequence derived from alignment at scaffold_1:1334494..1336035- (Nannochloropsis oceanica)
CCAAATCCCTGGGGCTGGAAGGCCGGCATTGGAACACCATCATGAAGGCC
CGCCACCGTGCTGCTGCCCTCGCCATCTTTGCCTCGCGGAATCCGTCCGA
GAAAAAGATTTATGAGGAGGGTGTACTAGACCTGCACGGGCTGCATGTGG
CAGAGGCGACCGAGGCAGTGGAGGAGTTGCTGCCAGACATTTACGCGTGT
GGGAAGGCTGGGGAGGCGACATTGATCACGGGGACAGGAAAACACTCGGG
AGGGGTGAGTCATTACCAAGCAAGGCTCTTCCCTGCGCTGGAGGCTTATT
TACGAGAGCTGGAGGAGGAGGTGAAGGGGGGTGGGAAGGGGAGGAAGGGG
GAGAGGGAGAGCGAGAGGGGGTTGTTCGAGAGGGTTGTGGACCCCCAAGG
GTACGAAGGGGGCTTTAGGGTGCGGCTGTCGAGGGAGTTGATGGAGTATT
GGGGTGTAGGGAGCTAGATGGTAGCGGCGGAGGAGGAGGAGGCGTATGTG
CGTGATGCTGCCCTAGGAGTGCTGATGGGCACCTTTCCACACGCGTCGCC
CGATGCCCTTCTCGTCGCTCTCTTGCGTTGCGACGTCGATTTGGAAGAAG
CAGTGCGGAGGGTGGACGCGGCATTAAAACCCCGGGTGCCCGCATGCCGT
TACTTTGTGTCTGGCTTTTGTGCCCGGGCCGACTGTGCCTTCAGCCATGC
CCTGGATACGATGACGTGCATTCACTGGTTACTTGGGTCCTGTCGGGACG
GGATGATGGACGAGGAAAGCAAGACGCTGCACAGGTGCCCTTTCTGGCAT
GACATCCGTGCCGTGGACCGGGAGGACGGTAATCCTTCCGAGACCTCTTC
CTCCTCCTCGTCCTCCTCCTCCACCTCCTCCTCCTCTTCTTCCGGCCCAC
TCTTCAGTGCCAAGGACGAAACACACTTTCCTGCCCTTTCAGCCTCGACA
ACCAGCAGCTCCGCCACGACGTCTGCGGCGTCCTCGTCCTCGTCCTCGTC
CTCGTCCTCGTCCTCGTCCTCGCCCTCCACCACGGCCAGCACTCCGGGCA
AGTCTTTCCTACAAGTCGCCCTGGCCTCGAAACGCACCTCCATCCCTGGG
AGAAACCCTTTCCCTTCCTCCCTCCCTTCCTCTTCTTCCTCCAAGAACAG
CTGCAGGAGCAGGAGCAGGAGTAGGAGCAGCAGAAGGAGGTTGGAATCTC
TGTGGGTCATGGGGGGGGAGGAGGTGAGAAAGACATACCAGCAGGCGCGA
GCGGAGGCGACCCACGCAGCAAAGGCTCGGAACCAATACTTCATGCGGGC
CACTGAGGCCTTCCAGAGGGGGGATAAGGCGGCGGCCAAATCCCTGGGGC
TGGAAGGCCGGCATTGGAACACCATCATGAAGGCCCGCCACCGTGCTGCT
GCCCTCGCCATCTTTGCCTCGCGGAATCCGTCCGAGAAAAAGATTTATGA
GGAGGGTGTACTAGACCTGCACGGGCTGCATGTGGCAGAGGCGACCGAGG
CAGTGGAGGAGTTGCTGCCAGACATTTACGCGTGTGGGAAGGCTGGGGAG
GCGACATTGATCACGGGGACAGGAAAACACTCGGGAGGGGTGAGTCATTA
CCAAGCAAGGCTCTTCCCTGCGCTGGAGGCTTATTTACGAGAGCTGGAGG
AGGAGGTGAAGGGGGGTGGGAAGGGGAGGAAGGGGGAGAGGGAGAGCGAG
AGGGGGTTGTTCGAGAGGGTTGTGGACCCCCAAGGGTACGAAGGGGGCTT
TAGGGTGCGGCTGTCGAGGGAGTTGATGGAGTATTGGGGTGTAGGGAGCT
AGATGGTAGCGGCGGAGGAGGAGGAGGCGTATGTGCGTGATGCTGCCCTA
GGAGTGCTGATGGGCACCTTTCCACACGCGTCGCCCGATGCCCTTCTCGT
CGCTCTCTTGCGTTGCGACGTCGATTTGGAAGAAGCAGTGCGGAGGGTGG
ACGCGGCATTAAAACCCCGGGTGCCCGCATGCCGTTACTTTGTGTCTGGC
TTTTGTGCCCGGGCCGACTGTGCCTTCAGCCATGCCCTGGATACGATGAC
GTGCATTCACTGGTTACTTGGGTCCTGTCGGGACGGGATGATGGACGAGG
AAAGCAAGACGCTGCACAGGTGCCCTTTCTGGCATGACATCCGTGCCGTG
GACCGGGAGGACGGTAATCCTTCCGAGACCTCTTCCTCCTCCTCGTCCTC
CTCCTCCACCTCCTCCTCCTCTTCTTCCGGCCCACTCTTCAGTGCCAAGG
ACGAAACACACTTTCCTGCCCTTTCAGCCTCGACAACCAGCAGCTCCGCC
ACGACGTCTGCGGCGTCCTCGTCCTCGTCCTCGTCCTCGTCCTCGTCCTC
GTCCTCGCCCTCCACCACGGCCAGCACTCCGGGCAAGTCTTTCCTACAAG
TCGCCCTGGCCTCGAAACGCACCTCCATCCCTGGGAGAAACCCTTTCCCT
TCCTCCCTCCCTTCCTCTTCTTCCTCCAAGAACAGCTGCAGGAGCAGGAG
CAGGAGTAGGAGCAGCAGAAGGAGGTTGGAATCTCTGTGGGTCATGGGGG
GGGAGGAGGTGAGAAAGACATACCAGCAGGCGCGAGCGGAGGCGACCCAC
GCAGCAAAGGCTCGGAACCAATACTTCATGCGGGCCACTGAGGCCTTCCA
GAGGGGGGATAAGGCGGCGG
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Synonyms
Publications