jgi.p|Nanoce1779_2|573235, mRNA_1724 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|573235
Unique NamemRNA_1724
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length931
Alignment locationscaffold_1:1332749..1334227 +

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Properties
Property NameValue
TranscriptId573321
TrackFilteredModels2
ProteinId573235
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:1332749..1334227 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573235gene_1724Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573235mRNA_1724-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1724CDS_1724Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1724 ID=mRNA_1724|Name=jgi.p|Nanoce1779_2|573235|organism=Nannochloropsis oceanica|type=mRNA|length=931bp
CAGTACAACCAGTAACACTAGTCATGCTGCGGGTCGCGAGCCCTCCTCCC
CCTCCTCTTCCTCCGCCGCCGCCGCCGCCGCCGCCGCCCAGCAAAAGACC
GCGAAAAGGCAGTCAGCTGCAACAACAACACCAGCAGCAACAACAACAGC
GACAGCAGCAACAGGGGCCTCGCATAAGGATATTTTTGACTTTGTCAAGG
TCGCGGAAAAGGGGAAGGCGGAGGCGAGAGCTGCGGTTGAGAGGATGACA
AGGAAGTTTCAGGACGTGCTCAAGTACTTTGGGGAGGATCCAAAAATGCT
GCCGGAGGTGTTCTTCACCACTCTCGAGAGCTTCATGAAGGTCTTTGATC
AAGCCAAAATCGACGTCGAGAGGAAAGAGCGTGCCTTTGAACGAGAGCGT
CTGCTTACTGAGAAGAAGGAGAAGTCCCTCATGTCCCCCACAAGCACCAG
CGCCAGTGGCAGCAGCAGCAGCACTGGGGCTGTAGGTCCCCGCACGGCAT
TTGGGGGCCCAGGGGCGGGGAGGGGAGGAGGGATGGAGAGAGGAGGAATG
GAAAGTGGCGCGCTGCGAGGGCAGCTGCTGCAGCAACTAAAGGCTGCTGG
TCAGACGAGGGGAGGTGTTCGACCTCCACCAATTACGGCTCCCGCCCCCC
TCGCCCTTTACGGAAAAGGCGTGAAGGAGGATGGATGGAGGAGAGGGGTG
GATGTTGAGGCAGGAAGAGGAGGAGGAGGGGGAGGAGAGGACGGGCCTCG
CTCCCCTGAGAAGCCGCCAAAGCCGGTCTTCCGCTAGGCACATTTTATGG
GAATCGATACTCCCCCTCCCCCTCCCCTGATAAAGGGGAGTGAGGGGGGA
GGGAGATAGCAGGAGATGTGATATTGACGAGGGGAAGAGCAGGAGACGAT
GATTTCGAGGGCGTGTACATGTATGGGAGGG
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protein sequence of jgi.p|Nanoce1779_2|573235

>mRNA_1724-protein ID=mRNA_1724-protein|Name=jgi.p|Nanoce1779_2|573235|organism=Nannochloropsis oceanica|type=polypeptide|length=181bp
MTRKFQDVLKYFGEDPKMLPEVFFTTLESFMKVFDQAKIDVERKERAFER
ERLLTEKKEKSLMSPTSTSASGSSSSTGAVGPRTAFGGPGAGRGGGMERG
GMESGALRGQLLQQLKAAGQTRGGVRPPPITAPAPLALYGKGVKEDGWRR
GVDVEAGRGGGGGGEDGPRSPEKPPKPVFR*
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mRNA from alignment at scaffold_1:1332749..1334227+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1724 ID=mRNA_1724|Name=jgi.p|Nanoce1779_2|573235|organism=Nannochloropsis oceanica|type=mRNA|length=1479bp|location=Sequence derived from alignment at scaffold_1:1332749..1334227+ (Nannochloropsis oceanica)
CAGTACAACCAGTAACACTAGTCATGCTGCGGGTCGCGAGCCCTCCTCCC
CCTCCTCTTCCTCCGCCGCCGCCGCCGCCGCCGCCGCCCAGCAAAAGACC
GCGAAAAGGCAGTCAGCTGCAACAACAACACCAGCAGCAACAACAACAGC
GACAGCAGCAACAGGGGCCTCGCATAAGGATATTTTTGACTTTGTCAAGG
TCGCGGAAAAGGGGAAGGCGGAGGCGAGAGCTGCGGTTGAGAGGATGACA
AGGAAGTTTCAGGTAAGGAGCAGGAGGGAGGGACGGAAGCAGGGAGGGAC
GGAGGGAGGGACGGAGAAGGAATTTTCAGATATCACAAATTCTGATACTT
TTTTCTTCTTTGCGGAGGAGAAAGAAGAAGATGGGAGGGAGGGAGGGAGG
GAGGGAGGGCGCATGTTTGATTTTCCGACCCCCTTCACTTCGTTTGATGT
TGACATGCGCACTGTGTTTGTCCTTCTCCTTGTCCTTACCCTTGCCGTTA
TTTTCATCCTTCTTCTGGCCATTTTTCTGGCCCTTACCCCTCATGCCACA
CCCTTCTCCTTGTCCTTGAACCTCATTCTTGTCCGTGAACCTCATTCTTG
TCCGTGAACCTCTCTCTTATCCTTGTCCTATTCCTTAAACCTCACTCTTC
CCCTACCCCTGACGCCACTGCCGTTGCCCACACCAGGACGTGCTCAAGTA
CTTTGGGGAGGATCCAAAAATGCTGCCGGAGGTGTTCTTCACCACTCTCG
AGAGCTTCATGAAGGTCCGCTCTCCCTTCCTCCTTCCTTTCGGCCCTCTC
TCTTCCATATTCTCGATTCCCTCAATGCCATCCTGCCCCCCCTCCTCAAT
GCCTCCCTCCCCCTCTCTTTCCCTCCGTCCCTCCCAAGGTCTTTGATCAA
GCCAAAATCGACGTCGAGAGGAAAGAGCGTGCCTTTGAACGAGAGCGTCT
GCTTACTGAGAAGAAGGAGAAGTCCCTCATGTCCCCCACAAGCACCAGCG
CCAGTGGCAGCAGCAGCAGCACTGGGGCTGTAGGTCCCCGCACGGCATTT
GGGGGCCCAGGGGCGGGGAGGGGAGGAGGGATGGAGAGAGGAGGAATGGA
AAGTGGCGCGCTGCGAGGGCAGCTGCTGCAGCAACTAAAGGCTGCTGGTC
AGACGAGGGGAGGTGTTCGACCTCCACCAATTACGGCTCCCGCCCCCCTC
GCCCTTTACGGAAAAGGCGTGAAGGAGGATGGATGGAGGAGAGGGGTGGA
TGTTGAGGCAGGAAGAGGAGGAGGAGGGGGAGGAGAGGACGGGCCTCGCT
CCCCTGAGAAGCCGCCAAAGCCGGTCTTCCGCTAGGCACATTTTATGGGA
ATCGATACTCCCCCTCCCCCTCCCCTGATAAAGGGGAGTGAGGGGGGAGG
GAGATAGCAGGAGATGTGATATTGACGAGGGGAAGAGCAGGAGACGATGA
TTTCGAGGGCGTGTACATGTATGGGAGGG
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Coding sequence (CDS) from alignment at scaffold_1:1332749..1334227+

>mRNA_1724 ID=mRNA_1724|Name=jgi.p|Nanoce1779_2|573235|organism=Nannochloropsis oceanica|type=CDS|length=1629bp|location=Sequence derived from alignment at scaffold_1:1332749..1334227+ (Nannochloropsis oceanica)
ATGACAAGGAAGTTTCAGGACGTGCTCAAGTACTTTGGGGAGGATCCAAA
AATGCTGCCGGAGGTGTTCTTCACCACTCTCGAGAGCTTCATGAAGGTCT
TTGATCAAGCCAAAATCGACGTCGAGAGGAAAGAGCGTGCCTTTGAACGA
GAGCGTCTGCTTACTGAGAAGAAGGAGAAGTCCCTCATGTCCCCCACAAG
CACCAGCGCCAGTGGCAGCAGCAGCAGCACTGGGGCTGTAGGTCCCCGCA
CGGCATTTGGGGGCCCAGGGGCGGGGAGGGGAGGAGGGATGGAGAGAGGA
GGAATGGAAAGTGGCGCGCTGCGAGGGCAGCTGCTGCAGCAACTAAAGGC
TGCTGGTCAGACGAGGGGAGGTGTTCGACCTCCACCAATTACGGCTCCCG
CCCCCCTCGCCCTTTACGGAAAAGGCGTGAAGGAGGATGGATGGAGGAGA
GGGGTGGATGTTGAGGCAGGAAGAGGAGGAGGAGGGGGAGGAGAGGACGG
GCCTCGCTCCCCTGAGAAGCCGCCAAAGCCGGTCTTCCGCTAGATGACAA
GGAAGTTTCAGGACGTGCTCAAGTACTTTGGGGAGGATCCAAAAATGCTG
CCGGAGGTGTTCTTCACCACTCTCGAGAGCTTCATGAAGGTCTTTGATCA
AGCCAAAATCGACGTCGAGAGGAAAGAGCGTGCCTTTGAACGAGAGCGTC
TGCTTACTGAGAAGAAGGAGAAGTCCCTCATGTCCCCCACAAGCACCAGC
GCCAGTGGCAGCAGCAGCAGCACTGGGGCTGTAGGTCCCCGCACGGCATT
TGGGGGCCCAGGGGCGGGGAGGGGAGGAGGGATGGAGAGAGGAGGAATGG
AAAGTGGCGCGCTGCGAGGGCAGCTGCTGCAGCAACTAAAGGCTGCTGGT
CAGACGAGGGGAGGTGTTCGACCTCCACCAATTACGGCTCCCGCCCCCCT
CGCCCTTTACGGAAAAGGCGTGAAGGAGGATGGATGGAGGAGAGGGGTGG
ATGTTGAGGCAGGAAGAGGAGGAGGAGGGGGAGGAGAGGACGGGCCTCGC
TCCCCTGAGAAGCCGCCAAAGCCGGTCTTCCGCTAGATGACAAGGAAGTT
TCAGGACGTGCTCAAGTACTTTGGGGAGGATCCAAAAATGCTGCCGGAGG
TGTTCTTCACCACTCTCGAGAGCTTCATGAAGGTCTTTGATCAAGCCAAA
ATCGACGTCGAGAGGAAAGAGCGTGCCTTTGAACGAGAGCGTCTGCTTAC
TGAGAAGAAGGAGAAGTCCCTCATGTCCCCCACAAGCACCAGCGCCAGTG
GCAGCAGCAGCAGCACTGGGGCTGTAGGTCCCCGCACGGCATTTGGGGGC
CCAGGGGCGGGGAGGGGAGGAGGGATGGAGAGAGGAGGAATGGAAAGTGG
CGCGCTGCGAGGGCAGCTGCTGCAGCAACTAAAGGCTGCTGGTCAGACGA
GGGGAGGTGTTCGACCTCCACCAATTACGGCTCCCGCCCCCCTCGCCCTT
TACGGAAAAGGCGTGAAGGAGGATGGATGGAGGAGAGGGGTGGATGTTGA
GGCAGGAAGAGGAGGAGGAGGGGGAGGAGAGGACGGGCCTCGCTCCCCTG
AGAAGCCGCCAAAGCCGGTCTTCCGCTAG
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Synonyms
Publications