jgi.p|Nanoce1779_2|15832, mRNA_1722 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|15832
Unique NamemRNA_1722
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1015
Alignment locationscaffold_1:1324171..1325444 +

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Properties
Property NameValue
TranscriptId15918
TrackFilteredModels2
ProteinId15832
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:1324171..1325444 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|15832gene_1722Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|15832mRNA_1722-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1722CDS_1722Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1722 ID=mRNA_1722|Name=jgi.p|Nanoce1779_2|15832|organism=Nannochloropsis oceanica|type=mRNA|length=1015bp
CCTCACGCCTTCGTTTACCCGCCTCCCCACATACAACACAAACATCAGCG
CTACCACTACGAAAGTGGCATGTACTACGCGTCATTCTCGCCCTTTCCCG
CCTTATCATCGCGTCCGTCGTCCCCGACCTGATTTACCAAACGAGCAAGT
AGTAAGAGAGGCTCCCCCTTCATCACCTCCTCGCCGTCATAAATTAAATA
ACCACATTGCTGCGTCAATCAAGGAAATTGCCGCGGCACCATGAATCCAG
CGATGATGGCTGAGTTGAAGGCCAAAAAGGAGGCTGGTGCAGCCAGGGCG
GCCGCCGAAGCCGCCACGGAAAGTGGAATGGATGAGAAGGCCTTTGCAGG
CGGCGTCCGCCAGGTCCAGGCTTACAACACCCACAACAATAACGTGATCG
TCAACAACAATAGAAGCAGCAGCATCAGCAGTTGTGATAGTAGTAGTAGT
GTACATGCTTCTCTGGAGGTGTTGGACATCACGTGTGTGTGGCCCGGCAG
GGTCTTTGCCATGGGTCCTCCCTCCGCCGACACCATCTCGTTTCTCAACG
ATGCCTACGCCGGTCGATATTTGATCTGGAATCTGAGTGACGAGTCGAGT
CATCGGGTGAACATTGGGTTGCAGGGTCAGATCTGTGATTTCCATTGGGC
GGCCCCCGGGAAAAGCCAGACCCCGACATTGCAGGCCCTGTTTCGGGTAT
GTTATTCGATCCATGCCTGGTTGAGCTTAAGTCCTGAGCATGCGGCGTTT
GTGTTTTGCAGCAATGGGAAAACACGGACGGGGATAGTGCTGGCGTGTTT
ATTGAGGGTTCAAGCTTTTCTGCGAGAGACGCTGCCAAGCCCCTCTCCAG
GACGTTTTGAGCAAGATTCCCCCCACCCTCGTGCAATACTTCAATCACTT
TGACGAAGCCCAACGGCTCGGGGCTTTTCCCAACCGTTACCCCCTCCGGT
TGGCGAGTGTGCGGATCGACGGGGTCCCTGTGGAGGACATGCCGTGCGTG
GACGTATGGGACGCG
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protein sequence of jgi.p|Nanoce1779_2|15832

>mRNA_1722-protein ID=mRNA_1722-protein|Name=jgi.p|Nanoce1779_2|15832|organism=Nannochloropsis oceanica|type=polypeptide|length=221bp
MNPAMMAELKAKKEAGAARAAAEAATESGMDEKAFAGGVRQVQAYNTHNN
NVIVNNNRSSSISSCDSSSSVHASLEVLDITCVWPGRVFAMGPPSADTIS
FLNDAYAGRYLIWNLSDESSHRVNIGLQGQICDFHWAAPGKSQTPTLQAL
FRVCYSIHAWLSLSPEHAAFVFCSNGKTRTGIVLACLLRVQAFLRETLPS
PSPGRFEQDSPHPRAILQSL*
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mRNA from alignment at scaffold_1:1324171..1325444+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1722 ID=mRNA_1722|Name=jgi.p|Nanoce1779_2|15832|organism=Nannochloropsis oceanica|type=mRNA|length=1274bp|location=Sequence derived from alignment at scaffold_1:1324171..1325444+ (Nannochloropsis oceanica)
CCTCACGCCTTCGTTTACCCGCCTCCCCACATACAACACAAACATCAGCG
CTACCACTACGAAAGTGGCATGTACTACGCGTCATTCTCGCCCTTTCCCG
CCTTATCATCGCGTCCGTCGTCCCCGACCTGATTTACCAAACGAGCAAGT
AGTAAGAGAGGCTCCCCCTTCATCACCTCCTCGCCGTCATAAATTAAATA
ACCACATTGCTGCGTCAATCAAGGAAATTGCCGCGGCACCATGAATCCAG
CGATGATGGCTGAGTTGAAGGCCAAAAAGGAGGCTGGTGCAGCCAGGGCG
GCCGCCGAAGCCGCCACGGAAAGTGGAATGGATGAGAAGGCCTTTGCAGG
CGGCGTCCGCCAGGTCCAGGCTTACAACACCCACAACAATAACGTGATCG
TCAACAACAATAGAAGCAGCAGCATCAGCAGTTGTGATAGTAGTAGTAGT
GTACATGCTTCTCTGGAGGTGTTGGACATCACGTGTGTGTGGCCCGGCAG
GGTCTTTGCCATGGGTCCTCCCTCCGCCGACACCATCTCGTTTCTCAACG
ATGCCTACGCCGGTCGATATTTGATCTGGAATCTGAGTGACGAGTCGAGT
CATCGGGTGAACATTGGGTTGCAGGGTCAGATCTGTGATTTCCATTGGGC
GGCCCCCGGGAAAAGCCAGACCCCGACATTGCAGGCCCTGTTTCGGGTAT
GTTATTCGATCCATGCCTGGTTGAGCTTAAGTCCTGAGCATGCGGCGTTT
GTGTTTTGCAGCAATGGGAAAACACGGACGGGGATAGTGCTGGCGTGTTT
ATTGAGGTATTGCTTGAGGGTGGAAACACCCTTGGAAGGTAGGTTCGATA
GGGAGGGGGGGAGGGAGGGAGGGAGGACGAAGGCGCTTCTAGTCCATGTG
CCACTTTTTTTGGGGCATCCAGTCGCTCAAATGCTTGCGTTCTACCCTCC
CCTTCCTCCCTACGTCCCTCCCCCCCAATGATCCTCAAATTAAACCCCCC
CCCTACCCTCGTGCCATGGCTCATTCCTCCCTCCATCCGTCCCTCCCTCC
TTCCCTTCCCTCTAGGGTTCAAGCTTTTCTGCGAGAGACGCTGCCAAGCC
CCTCTCCAGGACGTTTTGAGCAAGATTCCCCCCACCCTCGTGCAATACTT
CAATCACTTTGACGAAGCCCAACGGCTCGGGGCTTTTCCCAACCGTTACC
CCCTCCGGTTGGCGAGTGTGCGGATCGACGGGGTCCCTGTGGAGGACATG
CCGTGCGTGGACGTATGGGACGCG
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Coding sequence (CDS) from alignment at scaffold_1:1324171..1325444+

>mRNA_1722 ID=mRNA_1722|Name=jgi.p|Nanoce1779_2|15832|organism=Nannochloropsis oceanica|type=CDS|length=1326bp|location=Sequence derived from alignment at scaffold_1:1324171..1325444+ (Nannochloropsis oceanica)
ATGAATCCAGCGATGATGGCTGAGTTGAAGGCCAAAAAGGAGGCTGGTGC
AGCCAGGGCGGCCGCCGAAGCCGCCACGGAAAGTGGAATGGATGAGAAGG
CCTTTGCAGGCGGCGTCCGCCAGGTCCAGGCTTACAACACCCACAACAAT
AACGTGATCGTCAACAACAATAGAAGCAGCAGCATCAGCAGTTGTGATAG
TAGTAGTAGTGTACATGCTTCTCTGGAGGTGTTGGACATCACGTGTGTGT
GGCCCGGCAGGGTCTTTGCCATGGGTCCTCCCTCCGCCGACACCATCTCG
TTTCTCAACGATGCCTACGCCGGTCGATATTTGATCTGGAATCTGAGTGA
CGAGTCGAGTCATCGGGTGAACATTGGGTTGCAGGGTCAGATCTGTGATT
TCCATTGGGCGGCCCCCGGGAAAAGCCAGACCCCGACATTGCAGGCCCTG
TTTCGGGTATGTTATTCGATCCATGCCTGGTTGAGCTTAAGTCCTGAGCA
TGCGGCGTTTGTGTTTTGCAGCAATGGGAAAACACGGACGGGGATAGTGC
TGGCGTGTTTATTGAGGGTTCAAGCTTTTCTGCGAGAGACGCTGCCAAGC
CCCTCTCCAGGACGTTTTGAGCAAGATTCCCCCCACCCTCGTGCAATACT
TCAATCACTTTGAATGAATCCAGCGATGATGGCTGAGTTGAAGGCCAAAA
AGGAGGCTGGTGCAGCCAGGGCGGCCGCCGAAGCCGCCACGGAAAGTGGA
ATGGATGAGAAGGCCTTTGCAGGCGGCGTCCGCCAGGTCCAGGCTTACAA
CACCCACAACAATAACGTGATCGTCAACAACAATAGAAGCAGCAGCATCA
GCAGTTGTGATAGTAGTAGTAGTGTACATGCTTCTCTGGAGGTGTTGGAC
ATCACGTGTGTGTGGCCCGGCAGGGTCTTTGCCATGGGTCCTCCCTCCGC
CGACACCATCTCGTTTCTCAACGATGCCTACGCCGGTCGATATTTGATCT
GGAATCTGAGTGACGAGTCGAGTCATCGGGTGAACATTGGGTTGCAGGGT
CAGATCTGTGATTTCCATTGGGCGGCCCCCGGGAAAAGCCAGACCCCGAC
ATTGCAGGCCCTGTTTCGGGTATGTTATTCGATCCATGCCTGGTTGAGCT
TAAGTCCTGAGCATGCGGCGTTTGTGTTTTGCAGCAATGGGAAAACACGG
ACGGGGATAGTGCTGGCGTGTTTATTGAGGGTTCAAGCTTTTCTGCGAGA
GACGCTGCCAAGCCCCTCTCCAGGACGTTTTGAGCAAGATTCCCCCCACC
CTCGTGCAATACTTCAATCACTTTGA
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Synonyms
Publications