jgi.p|Nanoce1779_2|573220, mRNA_1721 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|573220
Unique NamemRNA_1721
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length756
Alignment locationscaffold_1:1322355..1323663 -

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Properties
Property NameValue
TranscriptId573306
TrackFilteredModels2
ProteinId573220
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:1322355..1323663 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573220gene_1721Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573220mRNA_1721-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1721CDS_1721Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1721 ID=mRNA_1721|Name=jgi.p|Nanoce1779_2|573220|organism=Nannochloropsis oceanica|type=mRNA|length=756bp
AATAGACAGGAGCCACTCCTCTCTCCATCCGTACAGACAATCATGCAGTT
CGTCCGCACCATCGCCGCCTTGCTCCTTGCTGCCTCTGTCTCCCAGGCTT
TCCTCGTTCCCACTCCGACCTCGGGTCGTGCCCTGACCAGCCGCTCGGCC
ACCGTAGTCGTCGGGCCGGCGACAGACATCCCTCGAGGCGAGCGCAAAAT
CGTCGATACGGACGCTGGGGCTGTGATTGTGGCGAACGTGGAAGGGAGCT
TTTATGCTGTGTTGGCCAAATGCCCTCACCTGGGCTTGCCTATGAAAACG
GGAAATATCGCGGTTGAGGGTGGAGAGCCGACGATCACCTGTAAATTTCA
CAACTCGAAATTTGAGCTCGCGACCGGGAAGTGCACGGCCTGGTCTGAGA
GCGTGTTTGGCATTAAGGGAACCGAAGGCATTGCTGGTTTCGTGGGTGGC
TTTGGTGGTGCAAAGGATTCGCCGGCGACTGTCTTTCCCGTCTTAACCAG
CGAGGAGGGGTTGGTGAGTATCGAGGTGTGAAGGGGTGAAGAAGGATACG
GGATGGGAGAAGGACATGATTAATTTTGACTACTTGTTTGGGCTCGAGGA
CGACTGAGAGGGAGCAAAACAGACTGATGCATGACACGACGGAAAATTCA
AAGCTTTCCTTTTTTCGACCATTGATTGATTCATTGAATGACTGAGACAT
TGAATGAAAACGCACCCATAATGAAAAAGAAAAGAAAATACATCGAGTTG
AACCAA
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protein sequence of jgi.p|Nanoce1779_2|573220

>mRNA_1721-protein ID=mRNA_1721-protein|Name=jgi.p|Nanoce1779_2|573220|organism=Nannochloropsis oceanica|type=polypeptide|length=163bp
MQFVRTIAALLLAASVSQAFLVPTPTSGRALTSRSATVVVGPATDIPRGE
RKIVDTDAGAVIVANVEGSFYAVLAKCPHLGLPMKTGNIAVEGGEPTITC
KFHNSKFELATGKCTAWSESVFGIKGTEGIAGFVGGFGGAKDSPATVFPV
LTSEEGLVSIEV*
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mRNA from alignment at scaffold_1:1322355..1323663-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1721 ID=mRNA_1721|Name=jgi.p|Nanoce1779_2|573220|organism=Nannochloropsis oceanica|type=mRNA|length=1309bp|location=Sequence derived from alignment at scaffold_1:1322355..1323663- (Nannochloropsis oceanica)
AATAGACAGGAGCCACTCCTCTCTCCATCCGTACAGACAATCATGCAGTT
CGTCCGCACCATCGCCGCCTTGCTCCTTGCTGCCTCTGTCTCCCAGGTAA
GGCCCCTTACGCTCCCTTGCTCACCGCTGTGTCCATCTATCAATCCATTC
ATACATCTTTACTACCTACCCTTCTTTTGCTCAGGCTTTCCTCGTTCCCA
CTCCGACCTCGGGTCGTGCCCTGACCAGCCGCTCGGCCACCGTAGTCGTC
GGGCCGGCGACAGACATCCCTCGAGGTACGCCGGATGAGAAGCAGAGAGA
CCATGCATAGTATTCACGGGTGTATAGGTAGTGGTCTCTGATCAATGTAC
ATTCCCGTCTTACATATTTGTGTGCTGTTTCCGTCTTTTTTATGGCATGT
CTGCACTCCTTACTTCCATCGACCATACTACATCACTTTCCATAAGCCTT
TCTCAACCCTTCTTCTCCCCGTTTTTTCCCTTCTTCCCGTTATTTTCCTC
ACAGGCGAGCGCAAAATCGTCGATACGGACGCTGGGGCTGTGATTGTGGC
GAACGTGGAAGGGAGCTTTTATGCTGTGTTGGCCAAATGCCCTCACCTGG
GCTTGCCTATGAAAACGGGTAAGTAGGCAGGAAGATAGCAGAAAGTCACA
TTGAATTGTGCGAGGCTGGTTGTGTGTGCATGCATCGTTGATCATTCTGT
ATCTTTCTTCAATGTTTTGTTCAATGTTATCTCAAGATGGCATAATACGC
CCCTCTTTCTGCTTCCCCCCCCAACATTCAAAGATCACAACATACATATT
TCCTTCCCTTCCTAACCCTCCATTCATCTCATCTTCTGTTTTAACTACCT
TGAGGAAATATCGCGGTTGAGGGTGGAGAGCCGACGATCACCTGTAAATT
TCACAACTCGAAATTTGAGCTCGCGACCGGGAAGTGCACGGCCTGGTCTG
AGAGCGTGTTTGGCATTAAGGGAACCGAAGGCATTGCTGGTTTCGTGGGT
GGCTTTGGTGGTGCAAAGGATTCGCCGGCGACTGTCTTTCCCGTCTTAAC
CAGCGAGGAGGGGTTGGTGAGTATCGAGGTGTGAAGGGGTGAAGAAGGAT
ACGGGATGGGAGAAGGACATGATTAATTTTGACTACTTGTTTGGGCTCGA
GGACGACTGAGAGGGAGCAAAACAGACTGATGCATGACACGACGGAAAAT
TCAAAGCTTTCCTTTTTTCGACCATTGATTGATTCATTGAATGACTGAGA
CATTGAATGAAAACGCACCCATAATGAAAAAGAAAAGAAAATACATCGAG
TTGAACCAA
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Coding sequence (CDS) from alignment at scaffold_1:1322355..1323663-

>mRNA_1721 ID=mRNA_1721|Name=jgi.p|Nanoce1779_2|573220|organism=Nannochloropsis oceanica|type=CDS|length=1956bp|location=Sequence derived from alignment at scaffold_1:1322355..1323663- (Nannochloropsis oceanica)
GAAATATCGCGGTTGAGGGTGGAGAGCCGACGATCACCTGTAAATTTCAC
AACTCGAAATTTGAGCTCGCGACCGGGAAGTGCACGGCCTGGTCTGAGAG
CGTGTTTGGCATTAAGGGAACCGAAGGCATTGCTGGTTTCGTGGGTGGCT
TTGGTGGTGCAAAGGATTCGCCGGCGACTGTCTTTCCCGTCTTAACCAGC
GAGGAGGGGTTGGTGAGTATCGAGGTGTGAGCGAGCGCAAAATCGTCGAT
ACGGACGCTGGGGCTGTGATTGTGGCGAACGTGGAAGGGAGCTTTTATGC
TGTGTTGGCCAAATGCCCTCACCTGGGCTTGCCTATGAAAACGGGCTTTC
CTCGTTCCCACTCCGACCTCGGGTCGTGCCCTGACCAGCCGCTCGGCCAC
CGTAGTCGTCGGGCCGGCGACAGACATCCCTCGAGATGCAGTTCGTCCGC
ACCATCGCCGCCTTGCTCCTTGCTGCCTCTGTCTCCCAGGAAATATCGCG
GTTGAGGGTGGAGAGCCGACGATCACCTGTAAATTTCACAACTCGAAATT
TGAGCTCGCGACCGGGAAGTGCACGGCCTGGTCTGAGAGCGTGTTTGGCA
TTAAGGGAACCGAAGGCATTGCTGGTTTCGTGGGTGGCTTTGGTGGTGCA
AAGGATTCGCCGGCGACTGTCTTTCCCGTCTTAACCAGCGAGGAGGGGTT
GGTGAGTATCGAGGTGTGAGCGAGCGCAAAATCGTCGATACGGACGCTGG
GGCTGTGATTGTGGCGAACGTGGAAGGGAGCTTTTATGCTGTGTTGGCCA
AATGCCCTCACCTGGGCTTGCCTATGAAAACGGGCTTTCCTCGTTCCCAC
TCCGACCTCGGGTCGTGCCCTGACCAGCCGCTCGGCCACCGTAGTCGTCG
GGCCGGCGACAGACATCCCTCGAGATGCAGTTCGTCCGCACCATCGCCGC
CTTGCTCCTTGCTGCCTCTGTCTCCCAGGAAATATCGCGGTTGAGGGTGG
AGAGCCGACGATCACCTGTAAATTTCACAACTCGAAATTTGAGCTCGCGA
CCGGGAAGTGCACGGCCTGGTCTGAGAGCGTGTTTGGCATTAAGGGAACC
GAAGGCATTGCTGGTTTCGTGGGTGGCTTTGGTGGTGCAAAGGATTCGCC
GGCGACTGTCTTTCCCGTCTTAACCAGCGAGGAGGGGTTGGTGAGTATCG
AGGTGTGAGCGAGCGCAAAATCGTCGATACGGACGCTGGGGCTGTGATTG
TGGCGAACGTGGAAGGGAGCTTTTATGCTGTGTTGGCCAAATGCCCTCAC
CTGGGCTTGCCTATGAAAACGGGCTTTCCTCGTTCCCACTCCGACCTCGG
GTCGTGCCCTGACCAGCCGCTCGGCCACCGTAGTCGTCGGGCCGGCGACA
GACATCCCTCGAGATGCAGTTCGTCCGCACCATCGCCGCCTTGCTCCTTG
CTGCCTCTGTCTCCCAGGAAATATCGCGGTTGAGGGTGGAGAGCCGACGA
TCACCTGTAAATTTCACAACTCGAAATTTGAGCTCGCGACCGGGAAGTGC
ACGGCCTGGTCTGAGAGCGTGTTTGGCATTAAGGGAACCGAAGGCATTGC
TGGTTTCGTGGGTGGCTTTGGTGGTGCAAAGGATTCGCCGGCGACTGTCT
TTCCCGTCTTAACCAGCGAGGAGGGGTTGGTGAGTATCGAGGTGTGAGCG
AGCGCAAAATCGTCGATACGGACGCTGGGGCTGTGATTGTGGCGAACGTG
GAAGGGAGCTTTTATGCTGTGTTGGCCAAATGCCCTCACCTGGGCTTGCC
TATGAAAACGGGCTTTCCTCGTTCCCACTCCGACCTCGGGTCGTGCCCTG
ACCAGCCGCTCGGCCACCGTAGTCGTCGGGCCGGCGACAGACATCCCTCG
AGATGCAGTTCGTCCGCACCATCGCCGCCTTGCTCCTTGCTGCCTCTGTC
TCCCAG
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Synonyms
Publications