jgi.p|Nanoce1779_2|576438, mRNA_172 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|576438
Unique NamemRNA_172
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length934
Alignment locationscaffold_3:436540..437473 +

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Properties
Property NameValue
TranscriptId576524
TrackFilteredModels2
ProteinId576438
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:436540..437473 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576438gene_172Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576438mRNA_172-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_172CDS_172Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_172 ID=mRNA_172|Name=jgi.p|Nanoce1779_2|576438|organism=Nannochloropsis oceanica|type=mRNA|length=934bp
GCTGGACATTTTTGGATTATTCTTTTTTCCCTGTCTTCAAATGTTGTCCC
TCCCTTTGGATGGTTCTGGTTCTTTTTTTGGGGGGGTGGGTGGGAGGAAG
GGGAGAGTCGCACAGTCTACAGCCTCCTGTTTTCCTTTCATTCACCTTTT
GTCTCTTGCTCTCTTTACGTTTTTCTTCTGGGCCCCCTTCTGTCTTCCCA
GGGATATTTCTTATTCTTCTTCTTATTTCATAGCACCCGGAGGGGTGTTT
TTTGGTGGGTCGACGGATGCCACTCTTTGATTCATGAAGTTCTGGTGGTA
CACGATGAAATTATTTCTACCCCCTCTTTAATCACACACTCTCTCCCTAC
GCTTTCAATCTGCTCTTTTGACCAGTCCTTCCATTTTCCGCTCAGTAATT
TTCTCTCTCCTACTTTTCCTTCCATTTCCCCCACCCTTTAGTTTCAGTCT
CTCTATCCTTCTTTTTTTCCAGTCTCGAACACAGAACCAGTGCCGAACCT
TTTCTCAGACATTTCCTGACAGACATATTCTCTATGGTGGATACAGGCAC
AGACATGCCCAGACAGATAGACAAGAGACCGCTCCTACGGCTGCTGCTGC
TGCTGCTACTGCTGCTTATCCTGCTTCGCTGGAAGCATTCTTGAGGCTCT
TAAGTAATGACGGTTAAAGGGTTCTTTTTTCATGCTTTCTCTCTCTGTGC
CTGTCTCTGTGCCTATCTGTATCTGCCATTCTCGTTTCGATTCTCCATTC
TACCACTCCGTCCCACCTTCCCTCACTCACACTGGTCACATTTTTATTCA
ACCGTCGCATCATATTTACTTCCTTCCCACTACCACGAACACCACTATAA
CTGCTGCTACTGCCGCTGCTGCTGCGTCTTCGAGACCTTGATTGGCCCCG
ACAATACATACCTGCTTTAATGCCTCCACACCCC
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protein sequence of jgi.p|Nanoce1779_2|576438

>mRNA_172-protein ID=mRNA_172-protein|Name=jgi.p|Nanoce1779_2|576438|organism=Nannochloropsis oceanica|type=polypeptide|length=88bp
MTVKGFFFHAFSLCACLCAYLYLPFSFRFSILPLRPTFPHSHWSHFYSTV
ASYLLPSHYHEHHYNCCYCRCCCVFETLIGPDNTYLL*
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mRNA from alignment at scaffold_3:436540..437473+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_172 ID=mRNA_172|Name=jgi.p|Nanoce1779_2|576438|organism=Nannochloropsis oceanica|type=mRNA|length=934bp|location=Sequence derived from alignment at scaffold_3:436540..437473+ (Nannochloropsis oceanica)
GCTGGACATTTTTGGATTATTCTTTTTTCCCTGTCTTCAAATGTTGTCCC
TCCCTTTGGATGGTTCTGGTTCTTTTTTTGGGGGGGTGGGTGGGAGGAAG
GGGAGAGTCGCACAGTCTACAGCCTCCTGTTTTCCTTTCATTCACCTTTT
GTCTCTTGCTCTCTTTACGTTTTTCTTCTGGGCCCCCTTCTGTCTTCCCA
GGGATATTTCTTATTCTTCTTCTTATTTCATAGCACCCGGAGGGGTGTTT
TTTGGTGGGTCGACGGATGCCACTCTTTGATTCATGAAGTTCTGGTGGTA
CACGATGAAATTATTTCTACCCCCTCTTTAATCACACACTCTCTCCCTAC
GCTTTCAATCTGCTCTTTTGACCAGTCCTTCCATTTTCCGCTCAGTAATT
TTCTCTCTCCTACTTTTCCTTCCATTTCCCCCACCCTTTAGTTTCAGTCT
CTCTATCCTTCTTTTTTTCCAGTCTCGAACACAGAACCAGTGCCGAACCT
TTTCTCAGACATTTCCTGACAGACATATTCTCTATGGTGGATACAGGCAC
AGACATGCCCAGACAGATAGACAAGAGACCGCTCCTACGGCTGCTGCTGC
TGCTGCTACTGCTGCTTATCCTGCTTCGCTGGAAGCATTCTTGAGGCTCT
TAAGTAATGACGGTTAAAGGGTTCTTTTTTCATGCTTTCTCTCTCTGTGC
CTGTCTCTGTGCCTATCTGTATCTGCCATTCTCGTTTCGATTCTCCATTC
TACCACTCCGTCCCACCTTCCCTCACTCACACTGGTCACATTTTTATTCA
ACCGTCGCATCATATTTACTTCCTTCCCACTACCACGAACACCACTATAA
CTGCTGCTACTGCCGCTGCTGCTGCGTCTTCGAGACCTTGATTGGCCCCG
ACAATACATACCTGCTTTAATGCCTCCACACCCC
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Coding sequence (CDS) from alignment at scaffold_3:436540..437473+

>mRNA_172 ID=mRNA_172|Name=jgi.p|Nanoce1779_2|576438|organism=Nannochloropsis oceanica|type=CDS|length=264bp|location=Sequence derived from alignment at scaffold_3:436540..437473+ (Nannochloropsis oceanica)
ATGACGGTTAAAGGGTTCTTTTTTCATGCTTTCTCTCTCTGTGCCTGTCT
CTGTGCCTATCTGTATCTGCCATTCTCGTTTCGATTCTCCATTCTACCAC
TCCGTCCCACCTTCCCTCACTCACACTGGTCACATTTTTATTCAACCGTC
GCATCATATTTACTTCCTTCCCACTACCACGAACACCACTATAACTGCTG
CTACTGCCGCTGCTGCTGCGTCTTCGAGACCTTGATTGGCCCCGACAATA
CATACCTGCTTTAA
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Synonyms
Publications