jgi.p|Nanoce1779_2|635895, mRNA_1718 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|635895
Unique NamemRNA_1718
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length453
Alignment locationscaffold_1:1315938..1317048 -

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Properties
Property NameValue
TranscriptId635981
TrackFilteredModels2
ProteinId635895
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:1315938..1317048 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|635895gene_1718Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|635895mRNA_1718-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1718CDS_1718Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1718 ID=mRNA_1718|Name=jgi.p|Nanoce1779_2|635895|organism=Nannochloropsis oceanica|type=mRNA|length=453bp
ATGGACAAGGCCTCCAAGTCGATTGACTCGGCCTCAGACAAGGCCCAAAA
AGGTATCGATCAGGCGGACGCCAAGTTCAAGAAGGTCCAGATGGATGCTG
AGTCCAAGGCCAAGAAATTGGCAGACGACGCAAAGGCCAGGTCCGAGAAG
GTGAAGGCAGATGCAAAGATGAAGGCCCAGAAGGTGGCAGATGAGGCGAA
AGCCAAGGCGGAGAGGCTCAAGGCGGAAGCCAAGGCGGCTTCGGAGAAGG
CCAAGGCCCGATTGGAAGAGCAGAAGAAGAGGGCACGTGAGGCAGCCGAT
AAAGCGGACAAGGAAGCGAATCGCCTCGCTGACCAAGCAAAGCAGAAGAA
GTCTGACTTGAAGGCGTCTGCGAAAAAAGCGGAATCGGCCGTGGATGACG
GGATTGAGAAGGCCCGTGGTATTTTTGCGGGAATCAAGGGATGGTTTAAT
TAG
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protein sequence of jgi.p|Nanoce1779_2|635895

>mRNA_1718-protein ID=mRNA_1718-protein|Name=jgi.p|Nanoce1779_2|635895|organism=Nannochloropsis oceanica|type=polypeptide|length=151bp
MDKASKSIDSASDKAQKGIDQADAKFKKVQMDAESKAKKLADDAKARSEK
VKADAKMKAQKVADEAKAKAERLKAEAKAASEKAKARLEEQKKRAREAAD
KADKEANRLADQAKQKKSDLKASAKKAESAVDDGIEKARGIFAGIKGWFN
*
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mRNA from alignment at scaffold_1:1315938..1317048-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1718 ID=mRNA_1718|Name=jgi.p|Nanoce1779_2|635895|organism=Nannochloropsis oceanica|type=mRNA|length=1111bp|location=Sequence derived from alignment at scaffold_1:1315938..1317048- (Nannochloropsis oceanica)
ATGGACAAGGCCTCCAAGTCGATTGACTCGGCCTCAGACAAGGCCCAAAA
AGGTATCGATCAGGCGGACGCCAAGTTCAAGAAGGTCCAGATGGATGCTG
AGGTAAGGCAACGTGAAACAGTACGAGGCCAGTGATGTTGAAGTTTGCGG
GGCCCGAGCACGAGTAGCAGAGGACGGGCAGACAGGCACGACAAGTGGAT
CGTGATCCAAGAGGCAATGTGTGGTTTGAAAAAGTGCCTCAAGAAGGGCA
TGTTCTTTGTGAGGCGCCTGCATTCAATTTTTTGTGGTCTGGGCCGGGCA
AGATTCCCCTTCCTTTTTGCTTTCGCACACACACACACCCATACCCCCTT
CTTTTCACTAACCCCCCTAAAAAAACACAGTCCAAGGCCAAGAAATTGGC
AGACGACGCAAAGGCCAGGTCCGAGAAGGTGAAGGCAGATGCAAAGGTAC
GTGCAAGAAGCATACAAATTAAAAAGATGGAGTCTGGGGCCACGCAGATA
AAACGGAACCAAGAACGCCGCCTAAGCGTACGGTCCCTCCCCCCTATGCG
TTCTCCTTTCCTTCTTTCCTTTTCATCAATACCTTTCTACCGTCACCTGG
CACCAACATGCCTCTCTTCCTCCCCTCTCTTTCTTCCTGCCTCTTTCCTT
CCCCTACACATATTCAGATGAAGGCCCAGAAGGTGGCAGATGAGGCGAAA
GCCAAGGCGGAGAGGCTCAAGGCGGAAGCCAAGGTTTGTTTATTTTCATA
CGAATACTTATCATTTCCCCTCTCTTCCTTGTCTTCCTCTCTCACACTCA
CTACTGCTTTCCCTCCCTCTCTCCCTTCCTACCATCGTTTCTCCTAAACC
AACCAACCGTCCGTCCCTCCTTAATCCCCCACGCATTCGTAGGCGGCTTC
GGAGAAGGCCAAGGCCCGATTGGAAGAGCAGAAGAAGAGGGCACGTGAGG
CAGCCGATAAAGCGGACAAGGAAGCGAATCGCCTCGCTGACCAAGCAAAG
CAGAAGAAGTCTGACTTGAAGGCGTCTGCGAAAAAAGCGGAATCGGCCGT
GGATGACGGGATTGAGAAGGCCCGTGGTATTTTTGCGGGAATCAAGGGAT
GGTTTAATTAG
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Coding sequence (CDS) from alignment at scaffold_1:1315938..1317048-

>mRNA_1718 ID=mRNA_1718|Name=jgi.p|Nanoce1779_2|635895|organism=Nannochloropsis oceanica|type=CDS|length=1812bp|location=Sequence derived from alignment at scaffold_1:1315938..1317048- (Nannochloropsis oceanica)
GCGGCTTCGGAGAAGGCCAAGGCCCGATTGGAAGAGCAGAAGAAGAGGGC
ACGTGAGGCAGCCGATAAAGCGGACAAGGAAGCGAATCGCCTCGCTGACC
AAGCAAAGCAGAAGAAGTCTGACTTGAAGGCGTCTGCGAAAAAAGCGGAA
TCGGCCGTGGATGACGGGATTGAGAAGGCCCGTGGTATTTTTGCGGGAAT
CAAGGGATGGTTTAATTAGATGAAGGCCCAGAAGGTGGCAGATGAGGCGA
AAGCCAAGGCGGAGAGGCTCAAGGCGGAAGCCAAGTCCAAGGCCAAGAAA
TTGGCAGACGACGCAAAGGCCAGGTCCGAGAAGGTGAAGGCAGATGCAAA
GATGGACAAGGCCTCCAAGTCGATTGACTCGGCCTCAGACAAGGCCCAAA
AAGGTATCGATCAGGCGGACGCCAAGTTCAAGAAGGTCCAGATGGATGCT
GAGGCGGCTTCGGAGAAGGCCAAGGCCCGATTGGAAGAGCAGAAGAAGAG
GGCACGTGAGGCAGCCGATAAAGCGGACAAGGAAGCGAATCGCCTCGCTG
ACCAAGCAAAGCAGAAGAAGTCTGACTTGAAGGCGTCTGCGAAAAAAGCG
GAATCGGCCGTGGATGACGGGATTGAGAAGGCCCGTGGTATTTTTGCGGG
AATCAAGGGATGGTTTAATTAGATGAAGGCCCAGAAGGTGGCAGATGAGG
CGAAAGCCAAGGCGGAGAGGCTCAAGGCGGAAGCCAAGTCCAAGGCCAAG
AAATTGGCAGACGACGCAAAGGCCAGGTCCGAGAAGGTGAAGGCAGATGC
AAAGATGGACAAGGCCTCCAAGTCGATTGACTCGGCCTCAGACAAGGCCC
AAAAAGGTATCGATCAGGCGGACGCCAAGTTCAAGAAGGTCCAGATGGAT
GCTGAGGCGGCTTCGGAGAAGGCCAAGGCCCGATTGGAAGAGCAGAAGAA
GAGGGCACGTGAGGCAGCCGATAAAGCGGACAAGGAAGCGAATCGCCTCG
CTGACCAAGCAAAGCAGAAGAAGTCTGACTTGAAGGCGTCTGCGAAAAAA
GCGGAATCGGCCGTGGATGACGGGATTGAGAAGGCCCGTGGTATTTTTGC
GGGAATCAAGGGATGGTTTAATTAGATGAAGGCCCAGAAGGTGGCAGATG
AGGCGAAAGCCAAGGCGGAGAGGCTCAAGGCGGAAGCCAAGTCCAAGGCC
AAGAAATTGGCAGACGACGCAAAGGCCAGGTCCGAGAAGGTGAAGGCAGA
TGCAAAGATGGACAAGGCCTCCAAGTCGATTGACTCGGCCTCAGACAAGG
CCCAAAAAGGTATCGATCAGGCGGACGCCAAGTTCAAGAAGGTCCAGATG
GATGCTGAGGCGGCTTCGGAGAAGGCCAAGGCCCGATTGGAAGAGCAGAA
GAAGAGGGCACGTGAGGCAGCCGATAAAGCGGACAAGGAAGCGAATCGCC
TCGCTGACCAAGCAAAGCAGAAGAAGTCTGACTTGAAGGCGTCTGCGAAA
AAAGCGGAATCGGCCGTGGATGACGGGATTGAGAAGGCCCGTGGTATTTT
TGCGGGAATCAAGGGATGGTTTAATTAGATGAAGGCCCAGAAGGTGGCAG
ATGAGGCGAAAGCCAAGGCGGAGAGGCTCAAGGCGGAAGCCAAGTCCAAG
GCCAAGAAATTGGCAGACGACGCAAAGGCCAGGTCCGAGAAGGTGAAGGC
AGATGCAAAGATGGACAAGGCCTCCAAGTCGATTGACTCGGCCTCAGACA
AGGCCCAAAAAGGTATCGATCAGGCGGACGCCAAGTTCAAGAAGGTCCAG
ATGGATGCTGAG
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Synonyms
Publications