jgi.p|Nanoce1779_2|573195, mRNA_1715 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|573195
Unique NamemRNA_1715
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length793
Alignment locationscaffold_1:1308075..1308867 -

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Properties
Property NameValue
TranscriptId573281
TrackFilteredModels2
ProteinId573195
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:1308075..1308867 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573195gene_1715Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573195mRNA_1715-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1715CDS_1715Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1715 ID=mRNA_1715|Name=jgi.p|Nanoce1779_2|573195|organism=Nannochloropsis oceanica|type=mRNA|length=793bp
GGAGGGAGGGAGGGAGGGAGGGAAGAAAGTAGTTTTTTTTTTGTTCATTG
TTCGGTATAAATATGGTCTGGTTAATGAATTCTTTCTTTCCCCCTCCGCG
TGTGTCAAGGGCGTAGGAATAATAAAGCTGCTTCCTGCGTTGTTGGTGCC
ATTGGGGGGGAGGGAGGGAGGAATACATGGGCTTGCCTCCGATACTGCTC
GCCGTTTCCCTTCCCTATTTTACACTATGCGTTTTTCCTTGTCTTGTGTC
CTGTGGTTGTAATGACGGGGTGTCGAGGAAAGACCGCTTTACTCAAGTGG
TGCTCGCATCCCTGACGAAACAATGGAGCAGCAAGAGGAAGGGAGGAAGG
AAAAGTAGGTTGGAGAAAGGAAGGAAACAAGAAAGGAGGGGAGGGAGGGA
TGTGGATGGAGAAGGAGACAAGACTCGAAGAGAAGGCATACATGCATTAC
AGGCCCTTACTATCATAAATAATAGGATGGTCAGTAGAAAAGCTGCGCCC
TCTCTGCATGGATGTTGTTTGTCGTCAAATTGTTCTCACAGACCAACAAC
AAATGCCCTTTTGCCACCCCCAGGAAACACGGTCCAAACGTTGTATCCCG
ATAGCCGGGCAGTGCGCCACCTTGTCGGTCTTTGCACGTCTCAAGGTGAC
ATGTGACGTTTGCGATACACAGGGAGAAAGGCAGATATCGTAACTGACAA
TCTTATCACAAGTCAGTCGGCAAGGATATGATGTTTAGGACCACGAAGAC
ACATGGAGAGACCTCAAGACGAGAAACACATCACAGTAGTAGC
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protein sequence of jgi.p|Nanoce1779_2|573195

>mRNA_1715-protein ID=mRNA_1715-protein|Name=jgi.p|Nanoce1779_2|573195|organism=Nannochloropsis oceanica|type=polypeptide|length=160bp
MGLPPILLAVSLPYFTLCVFPCLVSCGCNDGVSRKDRFTQVVLASLTKQW
SSKRKGGRKSRLEKGRKQERRGGRDVDGEGDKTRREGIHALQALTIINNR
MVSRKAAPSLHGCCLSSNCSHRPTTNALLPPPGNTVQTLYPDSRAVRHLV
GLCTSQGDM*
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mRNA from alignment at scaffold_1:1308075..1308867-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1715 ID=mRNA_1715|Name=jgi.p|Nanoce1779_2|573195|organism=Nannochloropsis oceanica|type=mRNA|length=793bp|location=Sequence derived from alignment at scaffold_1:1308075..1308867- (Nannochloropsis oceanica)
GGAGGGAGGGAGGGAGGGAGGGAAGAAAGTAGTTTTTTTTTTGTTCATTG
TTCGGTATAAATATGGTCTGGTTAATGAATTCTTTCTTTCCCCCTCCGCG
TGTGTCAAGGGCGTAGGAATAATAAAGCTGCTTCCTGCGTTGTTGGTGCC
ATTGGGGGGGAGGGAGGGAGGAATACATGGGCTTGCCTCCGATACTGCTC
GCCGTTTCCCTTCCCTATTTTACACTATGCGTTTTTCCTTGTCTTGTGTC
CTGTGGTTGTAATGACGGGGTGTCGAGGAAAGACCGCTTTACTCAAGTGG
TGCTCGCATCCCTGACGAAACAATGGAGCAGCAAGAGGAAGGGAGGAAGG
AAAAGTAGGTTGGAGAAAGGAAGGAAACAAGAAAGGAGGGGAGGGAGGGA
TGTGGATGGAGAAGGAGACAAGACTCGAAGAGAAGGCATACATGCATTAC
AGGCCCTTACTATCATAAATAATAGGATGGTCAGTAGAAAAGCTGCGCCC
TCTCTGCATGGATGTTGTTTGTCGTCAAATTGTTCTCACAGACCAACAAC
AAATGCCCTTTTGCCACCCCCAGGAAACACGGTCCAAACGTTGTATCCCG
ATAGCCGGGCAGTGCGCCACCTTGTCGGTCTTTGCACGTCTCAAGGTGAC
ATGTGACGTTTGCGATACACAGGGAGAAAGGCAGATATCGTAACTGACAA
TCTTATCACAAGTCAGTCGGCAAGGATATGATGTTTAGGACCACGAAGAC
ACATGGAGAGACCTCAAGACGAGAAACACATCACAGTAGTAGC
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Coding sequence (CDS) from alignment at scaffold_1:1308075..1308867-

>mRNA_1715 ID=mRNA_1715|Name=jgi.p|Nanoce1779_2|573195|organism=Nannochloropsis oceanica|type=CDS|length=480bp|location=Sequence derived from alignment at scaffold_1:1308075..1308867- (Nannochloropsis oceanica)
ATGGGCTTGCCTCCGATACTGCTCGCCGTTTCCCTTCCCTATTTTACACT
ATGCGTTTTTCCTTGTCTTGTGTCCTGTGGTTGTAATGACGGGGTGTCGA
GGAAAGACCGCTTTACTCAAGTGGTGCTCGCATCCCTGACGAAACAATGG
AGCAGCAAGAGGAAGGGAGGAAGGAAAAGTAGGTTGGAGAAAGGAAGGAA
ACAAGAAAGGAGGGGAGGGAGGGATGTGGATGGAGAAGGAGACAAGACTC
GAAGAGAAGGCATACATGCATTACAGGCCCTTACTATCATAAATAATAGG
ATGGTCAGTAGAAAAGCTGCGCCCTCTCTGCATGGATGTTGTTTGTCGTC
AAATTGTTCTCACAGACCAACAACAAATGCCCTTTTGCCACCCCCAGGAA
ACACGGTCCAAACGTTGTATCCCGATAGCCGGGCAGTGCGCCACCTTGTC
GGTCTTTGCACGTCTCAAGGTGACATGTGA
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Synonyms
Publications