jgi.p|Nanoce1779_2|667595, mRNA_1714 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|667595
Unique NamemRNA_1714
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1266
Alignment locationscaffold_1:1306512..1308074 +

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Properties
Property NameValue
TranscriptId667681
TrackFilteredModels2
ProteinId667595
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:1306512..1308074 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|667595gene_1714Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|667595mRNA_1714-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1714CDS_1714Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1714 ID=mRNA_1714|Name=jgi.p|Nanoce1779_2|667595|organism=Nannochloropsis oceanica|type=mRNA|length=1266bp
GCCAGTTTGATGGCCACAAGCGTCGCCTTATCACCTCCCTCCTGCCGCCC
TCTTACACTACCATTACATACACGTGCATGGTCGATCGAGGACCAGGCAT
AATAATTTTAGCAAACGGGACTAGTCGAAATGCAGGGCAAGCAGCGGCCT
CTTCACCGTCATCATCATCCTCCTCTCCTCACCACACACAACGTCTCGCC
TCCTCTTCCTTGCCCTCTTTTTTTCCCCGTGCAGTCCCTAACCACGCCCC
ATTCATCTTCCTTTCATCTCTACACAGATCATTTCTGTTTAGCGCGTGTG
TTTCTGCCTCTTGTCGGCTTAAACTGATTCACCGCCACCACTACTTGCCT
TCCCAAGCACCCTTTTCCTCTCCATCACAACCATCACCACCATGTCCAAC
TTGACCAAGGACCAGAAGGACGAGCTTGTCACTTCTTACGCCGCCCTGGC
CCTCTACGACGGCGATTCCGAAATCTCCTCTGAGCAGCTCAATGCCTTTA
TTACCGCCACCGGCAACGAGGTAGAGCCGTACTGGCCCATGCTTTTCTCC
AAGTTCTTGGCCGGTAAGATGGAGGACCTCATCACCAGCGTCGGTGGGGG
GGGGGGCGCTGCTGCTCCTGCGGGCGCGGCGGCTGCGGCACCGGAGGCTG
CTCCGGAGGCGGGAAAGAAGGAGAAGAAGGAGGAGAAGGAGGAGGATGCG
GATTTGGCCGGGGGGATGGATATGTTCGGGGGTGGGGGTGATGGCTACTA
AATTACTGTCAAAGTCCTTGTCCTTGTTTTGTATGGAGTCTTGTCATCAG
TTCGCATATGTTGCCGCCGGGTAGTTTTCCTTGACAACCTATGTATCTGC
GGAGAGACAATTGCAACATACCAGCACGATCATCATCAACAACGCCTTTT
TCCATGACAAGGGAAAGCTCACGTTTCCCTTGGCCTCGTCTTCTTCCTCT
TCTCCCTCTTTTTCCCCCTCATGCTCGTGGACATGGATGTGTGTGTGTGT
GAGTGTGTTTGTGAAGAGAGCTGGGTGTAGGTTGGTATGTAGGTAAGGCG
GTGCTTCTTGTCTCTCCTCTTCAGTTGTTGTTGTTTCCAACACGGGATTT
CGATAAGGAAAGGCAGGTGGGCTCGCGGTAGGCATGCAAACCCTCTAAGA
TTGACTGCACTTCGATTGGTTTCCATTCACCACAATCGACAGACAAAATA
CAAGAGAGAAACATGAATAGGGAACGAGGAAAAGAAGAAAAGGAAATCAA
AGGATCCATCAAGAAG
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protein sequence of jgi.p|Nanoce1779_2|667595

>mRNA_1714-protein ID=mRNA_1714-protein|Name=jgi.p|Nanoce1779_2|667595|organism=Nannochloropsis oceanica|type=polypeptide|length=120bp
MSNLTKDQKDELVTSYAALALYDGDSEISSEQLNAFITATGNEVEPYWPM
LFSKFLAGKMEDLITSVGGGGGAAAPAGAAAAAPEAAPEAGKKEKKEEKE
EDADLAGGMDMFGGGGDGY*
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mRNA from alignment at scaffold_1:1306512..1308074+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1714 ID=mRNA_1714|Name=jgi.p|Nanoce1779_2|667595|organism=Nannochloropsis oceanica|type=mRNA|length=1563bp|location=Sequence derived from alignment at scaffold_1:1306512..1308074+ (Nannochloropsis oceanica)
GCCAGTTTGATGGCCACAAGCGTCGCCTTATCACCTCCCTCCTGCCGCCC
TCTTACACTACCATTACATACACGTGCATGGTCGATCGAGGACCAGGCAT
AATAATTTTAGCAAACGGGACTAGTCGAAATGCAGGGCAAGCAGCGGCCT
CTTCACCGTCATCATCATCCTCCTCTCCTCACCACACACAACGTCTCGCC
TCCTCTTCCTTGCCCTCTTTTTTTCCCCGTGCAGTCCCTAACCACGCCCC
ATTCATCTTCCTTTCATCTCTACACAGATCATTTCTGTTTAGCGCGTGTG
TTTCTGCCTCTTGTCGGCTTAAACTGATTCACCGCCACCACTACTTGCCT
TCCCAAGCACCCTTTTCCTCTCCATCACAACCATCACCACCATGTCCAAC
TTGACCAAGGACCAGAAGGACGAGCTTGTCACTTCTTACGCCGCCCTGGC
CCTCTACGACGGCGATGTGAGTAGCAGAAGTAGCAGGAAAGAGGGAGGGG
AAGAGGGAATGGTCGGGGGGGAAATGGGTGGAAAATGCCAGGGATGCAGG
CGACTGCTTCTTCCATCTCCACGCCGTTTCCACCTCACCTCCTCTTGGTG
ATTTTTACCAACAAGAAAGGGGACTGGAGGATCCTATTTCAATGAGGGTG
GATGCACGCGTGTGGCGAGCGGCAACCAGCTCCTTCCTTCCTGTCTGATT
TCACCGCTCAGCATTCTGACTCTCCTTCTCTCCTTCCCTCCCCCGCCTCC
CAACATCACACAGTCCGAAATCTCCTCTGAGCAGCTCAATGCCTTTATTA
CCGCCACCGGCAACGAGGTAGAGCCGTACTGGCCCATGCTTTTCTCCAAG
TTCTTGGCCGGTAAGATGGAGGACCTCATCACCAGCGTCGGTGGGGGGGG
GGGCGCTGCTGCTCCTGCGGGCGCGGCGGCTGCGGCACCGGAGGCTGCTC
CGGAGGCGGGAAAGAAGGAGAAGAAGGAGGAGAAGGAGGAGGATGCGGAT
TTGGCCGGGGGGATGGATATGTTCGGGGGTGGGGGTGATGGCTACTAAAT
TACTGTCAAAGTCCTTGTCCTTGTTTTGTATGGAGTCTTGTCATCAGTTC
GCATATGTTGCCGCCGGGTAGTTTTCCTTGACAACCTATGTATCTGCGGA
GAGACAATTGCAACATACCAGCACGATCATCATCAACAACGCCTTTTTCC
ATGACAAGGGAAAGCTCACGTTTCCCTTGGCCTCGTCTTCTTCCTCTTCT
CCCTCTTTTTCCCCCTCATGCTCGTGGACATGGATGTGTGTGTGTGTGAG
TGTGTTTGTGAAGAGAGCTGGGTGTAGGTTGGTATGTAGGTAAGGCGGTG
CTTCTTGTCTCTCCTCTTCAGTTGTTGTTGTTTCCAACACGGGATTTCGA
TAAGGAAAGGCAGGTGGGCTCGCGGTAGGCATGCAAACCCTCTAAGATTG
ACTGCACTTCGATTGGTTTCCATTCACCACAATCGACAGACAAAATACAA
GAGAGAAACATGAATAGGGAACGAGGAAAAGAAGAAAAGGAAATCAAAGG
ATCCATCAAGAAG
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Coding sequence (CDS) from alignment at scaffold_1:1306512..1308074+

>mRNA_1714 ID=mRNA_1714|Name=jgi.p|Nanoce1779_2|667595|organism=Nannochloropsis oceanica|type=CDS|length=720bp|location=Sequence derived from alignment at scaffold_1:1306512..1308074+ (Nannochloropsis oceanica)
ATGTCCAACTTGACCAAGGACCAGAAGGACGAGCTTGTCACTTCTTACGC
CGCCCTGGCCCTCTACGACGGCGATTCCGAAATCTCCTCTGAGCAGCTCA
ATGCCTTTATTACCGCCACCGGCAACGAGGTAGAGCCGTACTGGCCCATG
CTTTTCTCCAAGTTCTTGGCCGGTAAGATGGAGGACCTCATCACCAGCGT
CGGTGGGGGGGGGGGCGCTGCTGCTCCTGCGGGCGCGGCGGCTGCGGCAC
CGGAGGCTGCTCCGGAGGCGGGAAAGAAGGAGAAGAAGGAGGAGAAGGAG
GAGGATGCGGATTTGGCCGGGGGGATGGATATGTTCGGGGGTGGGGGTGA
TGGCTACTAAATGTCCAACTTGACCAAGGACCAGAAGGACGAGCTTGTCA
CTTCTTACGCCGCCCTGGCCCTCTACGACGGCGATTCCGAAATCTCCTCT
GAGCAGCTCAATGCCTTTATTACCGCCACCGGCAACGAGGTAGAGCCGTA
CTGGCCCATGCTTTTCTCCAAGTTCTTGGCCGGTAAGATGGAGGACCTCA
TCACCAGCGTCGGTGGGGGGGGGGGCGCTGCTGCTCCTGCGGGCGCGGCG
GCTGCGGCACCGGAGGCTGCTCCGGAGGCGGGAAAGAAGGAGAAGAAGGA
GGAGAAGGAGGAGGATGCGGATTTGGCCGGGGGGATGGATATGTTCGGGG
GTGGGGGTGATGGCTACTAA
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Synonyms
Publications