jgi.p|Nanoce1779_2|573188, mRNA_1712 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|573188
Unique NamemRNA_1712
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1111
Alignment locationscaffold_1:1301887..1302997 +

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Properties
Property NameValue
TranscriptId573274
TrackFilteredModels2
ProteinId573188
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:1301887..1302997 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573188gene_1712Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573188mRNA_1712-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1712CDS_1712Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1712 ID=mRNA_1712|Name=jgi.p|Nanoce1779_2|573188|organism=Nannochloropsis oceanica|type=mRNA|length=1111bp
AGACAGGCAGAAACGTTGAGCACCAGCCTCGTGAGGTGTGCGCTTGGACT
TGGTTGGGACGTCCTCCTTCTCGAATCAACGACTCCCATCCTCTACGCAC
ACGCCCCAGCACCACATCCCATGAAAACGATGCCAAGGCTGTCGTCCTCT
CTCCTGTTTTTTATCCTGCTTAGTCCCATTGCAGCCTTTCTTCCCCCATC
ACCCGGACCCCTAGCATCATCACGCCCATCCCTTCCTGTCTTCTCCTCCT
CTTCTGCCTCTGCATCGCCCGAGGGAGACTCCCGGCACCAGCAGCACCAG
CACCAGCAGCAGCAACACAACCACGTCGAGTTGCGGGTCTACGACATCGG
TGGAAAGTACACGCCAATGATGTCTGCGCTACTCCGAAAGGAAATGCCTG
CAATTTGGCACGTGGGCGTGGGTGTGTACGGGAAGGAGTATTGGTTCTCC
ACACGCATTGAGAGCAAAGACTTGGGAGACACAGAGACGGCGTTCGGAAT
GGTCCCACACGCGACGTATGATCTTGGGCACACATTGGTGGAGCGCGAGG
CGTTCGAAGCCTATTTAGAGGAGGAGTTGGATGCTCGATTTAACATTGAC
ACATACAAGGTTTTCACGCATAATTGTAATCATTTCAGCCGGGATGCGTT
GGCGTTTTTGATGGGGGGGAATGTGGAGATGCCCTCCTACATACTCGAAA
ATTCAGACAAGGCTTTGGATGCCTTGCCGCAGGGGCAGGCGATGTTGACC
AAGACGATTGCTAATCAGGTTGCTAGGGTGGTAATGCTGGCATGGGGTAA
CGCCAATAGGAGCAAAGAGGAGATAGCGAGGCGAGAAGCAAGGAGAAAGA
CGAAGAAGATCGAGGTGGACGAAGCACAAGCCAATGGACCAGGAAAGGAA
GGGGGGCAGCAGATGGCGTGATGTGATATTAGTTGTCAATTAAAGGGTGA
GAATGTGAGGGTTTTGACGCGATGCGTGTATAGAAGAGAAAGTGCTGAGG
TAACAAAGGAGGAAAGACTCGCAACCCCCCCCAAATATCACGTTCTATGA
TGATATTTGGTCCTTCTTCTTCTTCCTCGACTCTTTTCTTCTATTCTATG
TTAAAGCAAAT
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protein sequence of jgi.p|Nanoce1779_2|573188

>mRNA_1712-protein ID=mRNA_1712-protein|Name=jgi.p|Nanoce1779_2|573188|organism=Nannochloropsis oceanica|type=polypeptide|length=267bp
MKTMPRLSSSLLFFILLSPIAAFLPPSPGPLASSRPSLPVFSSSSASASP
EGDSRHQQHQHQQQQHNHVELRVYDIGGKYTPMMSALLRKEMPAIWHVGV
GVYGKEYWFSTRIESKDLGDTETAFGMVPHATYDLGHTLVEREAFEAYLE
EELDARFNIDTYKVFTHNCNHFSRDALAFLMGGNVEMPSYILENSDKALD
ALPQGQAMLTKTIANQVARVVMLAWGNANRSKEEIARREARRKTKKIEVD
EAQANGPGKEGGQQMA*
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mRNA from alignment at scaffold_1:1301887..1302997+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1712 ID=mRNA_1712|Name=jgi.p|Nanoce1779_2|573188|organism=Nannochloropsis oceanica|type=mRNA|length=1111bp|location=Sequence derived from alignment at scaffold_1:1301887..1302997+ (Nannochloropsis oceanica)
AGACAGGCAGAAACGTTGAGCACCAGCCTCGTGAGGTGTGCGCTTGGACT
TGGTTGGGACGTCCTCCTTCTCGAATCAACGACTCCCATCCTCTACGCAC
ACGCCCCAGCACCACATCCCATGAAAACGATGCCAAGGCTGTCGTCCTCT
CTCCTGTTTTTTATCCTGCTTAGTCCCATTGCAGCCTTTCTTCCCCCATC
ACCCGGACCCCTAGCATCATCACGCCCATCCCTTCCTGTCTTCTCCTCCT
CTTCTGCCTCTGCATCGCCCGAGGGAGACTCCCGGCACCAGCAGCACCAG
CACCAGCAGCAGCAACACAACCACGTCGAGTTGCGGGTCTACGACATCGG
TGGAAAGTACACGCCAATGATGTCTGCGCTACTCCGAAAGGAAATGCCTG
CAATTTGGCACGTGGGCGTGGGTGTGTACGGGAAGGAGTATTGGTTCTCC
ACACGCATTGAGAGCAAAGACTTGGGAGACACAGAGACGGCGTTCGGAAT
GGTCCCACACGCGACGTATGATCTTGGGCACACATTGGTGGAGCGCGAGG
CGTTCGAAGCCTATTTAGAGGAGGAGTTGGATGCTCGATTTAACATTGAC
ACATACAAGGTTTTCACGCATAATTGTAATCATTTCAGCCGGGATGCGTT
GGCGTTTTTGATGGGGGGGAATGTGGAGATGCCCTCCTACATACTCGAAA
ATTCAGACAAGGCTTTGGATGCCTTGCCGCAGGGGCAGGCGATGTTGACC
AAGACGATTGCTAATCAGGTTGCTAGGGTGGTAATGCTGGCATGGGGTAA
CGCCAATAGGAGCAAAGAGGAGATAGCGAGGCGAGAAGCAAGGAGAAAGA
CGAAGAAGATCGAGGTGGACGAAGCACAAGCCAATGGACCAGGAAAGGAA
GGGGGGCAGCAGATGGCGTGATGTGATATTAGTTGTCAATTAAAGGGTGA
GAATGTGAGGGTTTTGACGCGATGCGTGTATAGAAGAGAAAGTGCTGAGG
TAACAAAGGAGGAAAGACTCGCAACCCCCCCCAAATATCACGTTCTATGA
TGATATTTGGTCCTTCTTCTTCTTCCTCGACTCTTTTCTTCTATTCTATG
TTAAAGCAAAT
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Coding sequence (CDS) from alignment at scaffold_1:1301887..1302997+

>mRNA_1712 ID=mRNA_1712|Name=jgi.p|Nanoce1779_2|573188|organism=Nannochloropsis oceanica|type=CDS|length=801bp|location=Sequence derived from alignment at scaffold_1:1301887..1302997+ (Nannochloropsis oceanica)
ATGAAAACGATGCCAAGGCTGTCGTCCTCTCTCCTGTTTTTTATCCTGCT
TAGTCCCATTGCAGCCTTTCTTCCCCCATCACCCGGACCCCTAGCATCAT
CACGCCCATCCCTTCCTGTCTTCTCCTCCTCTTCTGCCTCTGCATCGCCC
GAGGGAGACTCCCGGCACCAGCAGCACCAGCACCAGCAGCAGCAACACAA
CCACGTCGAGTTGCGGGTCTACGACATCGGTGGAAAGTACACGCCAATGA
TGTCTGCGCTACTCCGAAAGGAAATGCCTGCAATTTGGCACGTGGGCGTG
GGTGTGTACGGGAAGGAGTATTGGTTCTCCACACGCATTGAGAGCAAAGA
CTTGGGAGACACAGAGACGGCGTTCGGAATGGTCCCACACGCGACGTATG
ATCTTGGGCACACATTGGTGGAGCGCGAGGCGTTCGAAGCCTATTTAGAG
GAGGAGTTGGATGCTCGATTTAACATTGACACATACAAGGTTTTCACGCA
TAATTGTAATCATTTCAGCCGGGATGCGTTGGCGTTTTTGATGGGGGGGA
ATGTGGAGATGCCCTCCTACATACTCGAAAATTCAGACAAGGCTTTGGAT
GCCTTGCCGCAGGGGCAGGCGATGTTGACCAAGACGATTGCTAATCAGGT
TGCTAGGGTGGTAATGCTGGCATGGGGTAACGCCAATAGGAGCAAAGAGG
AGATAGCGAGGCGAGAAGCAAGGAGAAAGACGAAGAAGATCGAGGTGGAC
GAAGCACAAGCCAATGGACCAGGAAAGGAAGGGGGGCAGCAGATGGCGTG
A
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Synonyms
Publications